Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	102723737
ensemblid	ENSG00000278085.5
hgncid	51261
symbol	CT45A8
name	cancer/testis antigen family 45 member A8
refseq_nuc	NM_001291535.1
refseq_prot	NP_001278464.1
ensembl_nuc	ENST00000611660.5
ensembl_prot	ENSP00000481184.1
mane_status	MANE Select
chr	chrX
start	135846497
end	135854538
strand	-
ver	v1.2
region	chrX:135846497-135854538
region5000	chrX:135841497-135859538
regionname0	CT45A8_chrX_135846497_135854538
regionname5000	CT45A8_chrX_135841497_135859538

ahapid	grch38/ chm13v2	alen	total	AFR	EAS	EUR	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	189	6	1	4	1	3	CT45A8_chrX_135841497_135859538	CT45A8	MTDKT others(184): Show MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGS AMSKAKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTS SFSGDDLECRETASSPKSQQEINADIKRKLVKELRCVGQKYEKIFEMLEG VQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI	chrX	135841497	135859538
a0002	0/0	189	1	1	0	0	0	CT45A8_chrX_135841497_135859538	CT45A8	MTDKT others(184): Show MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGS AMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTS SFSGDDLECRETAFSPKSQQEINADIKRQLVKELRCVGQKYEKIFEMLEG VQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI	chrX	135841497	135859538
a0003	0/0	189	1	0	1	0	0	CT45A8_chrX_135841497_135859538	CT45A8	MTDKT others(184): Show MTDKTEKVAVDPETVFKRPRECDSPSYQKRQRMALLARKQGAGDSLIAGS AMSKEKKLMTGHAIPPSQLDSQIDDFTGFSKDRMMQKPGSNAPVGGNVTS SFSGDDLECRETASSPKSQQEINADIKRKLVKELRCVGQKYEKIFEMLEG VQGPTAVRKRFFESIIKEAARCMRRDFVKHLKKKLKRMI	chrX	135841497	135859538

achapid	grch38/ chm13v2	clen	total	AFR	EAS	EUR	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	567	5	1	4	0	CT45A8_chrX_135841497_135859538	CT45A8	ATGAC others(562): Show ATGACCGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAA ACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGG CCCTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCT GCCATGTCCAAAGCAAAGAAGCTTATGACAGGACATGCTATTCCACCCAG CCAATTGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGA TGATGCAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGC AGTTTCTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAA AAGCCAACAAGAAATTAATGCTGATATAAAACGTAAATTAGTGAAGGAAC TCCGATGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGA GTGCAAGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAA GGAAGCAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGA AACTGAAACGTATGATT	chrX	135841497	135859538
a0001c0004	0/0	567	1	0	0	1	CT45A8_chrX_135841497_135859538	CT45A8	ATGAC others(562): Show ATGACCGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAA ACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGG CCCTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCT GCCATGTCCAAAGCAAAGAAGCTTATGACAGGACATGCTATTCCACCCAG CCAATTGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGA TGATGCAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGC AGTTTCTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAA AAGCCAACAAGAAATTAATGCTGATATTAAACGTAAATTAGTGAAGGAAC TCCGATGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGA GTGCAAGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAA GGAAGCAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGA AACTGAAACGTATGATT	chrX	135841497	135859538
a0002c0003	0/0	567	1	1	0	0	CT45A8_chrX_135841497_135859538	CT45A8	ATGAC others(562): Show ATGACCGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAA ACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGG CCCTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCT GCCATGTCCAAAGAAAAGAAGCTTATGACAGGACATGCTATTCCACCCAG CCAATTGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGA TGATGCAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGC AGTTTCTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTTCTCTCCCAA AAGCCAACAAGAAATTAATGCTGATATAAAACGTCAATTAGTGAAGGAAC TCCGATGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGA GTGCAAGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAA GGAAGCAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGA AACTGAAACGTATGATT	chrX	135841497	135859538
a0003c0002	0/0	567	1	0	1	0	CT45A8_chrX_135841497_135859538	CT45A8	ATGAC others(562): Show ATGACCGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAA ACGTCCCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGG CCCTGTTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCT GCCATGTCCAAAGAAAAGAAGCTTATGACAGGACATGCTATTCCACCCAG CCAATTGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGA TGATGCAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGC AGTTTCTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAA AAGCCAACAAGAAATTAATGCTGATATAAAACGTAAATTAGTGAAGGAAC TCCGATGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGA GTGCAAGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAA GGAAGCAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGA AACTGAAACGTATGATT	chrX	135841497	135859538

acthapid	grch38 chm13v2	tlen	total	AFR	EAS	EUR	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1010	4	0	4	0	CT45A8_chrX_135841497_135859538	CT45A8	AGTGT others(1005): Show AGTGTTCGGCTGGGGCAGGCACGCTGTGGCTGGCTACTTCCCTTCCTCCC ATCCCCCTTGGGCCAAACGGGATCGGTGCTTCTGGTGAGACGCCTCCCCA TGCACATCACTCCCAGGTGCCCTAGGGGGCACATTTCCCACAACTCCCAG AGGGCAGGTTTCTAGAAAGTGCCACCAGTGGGGAGGCGCCACAACTTCAC TGCCATTTTGTGAGGTGCCGCCGTCTCTCCTCCAGCAAGGAAACAATGAC CGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAAACGTC CCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGGCCCTG TTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTGCCAT GTCCAAAGCAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAAT TGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGATGATG CAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGCAGTTT CTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAAAAGCC AACAAGAAATTAATGCTGATATAAAACGTAAATTAGTGAAGGAACTCCGA TGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCA AGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAAGGAAG CAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGAAACTG AAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACACCCCAAA TGCATAATCTCATTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTT TCTACAATGGAGCAGGATATTGCTGAAGTCTCCTGGCATATGTTACCGAA TCAACTGGCCTTCCAGAGGCTAAGAAATTTCTGTTAGTAAAAGATGTTCT TTTTCCCAAA	chrX	135841497	135859538
a0001c0001t0002	0/0	1010	1	1	0	0	CT45A8_chrX_135841497_135859538	CT45A8	AGTGT others(1005): Show AGTGTTCGGCTGGGGCAGGCACGCTGTGGCTGGCTACTTCCCTTCCTCCC ATCCCCCTTGGGCCAAACGGGATCCGTGCTTCTGGTGAGACGCCTCCCCA TGCACATCACTCCCAGGTGCCCTAGGGGGCACATTTCCCACAACTCCCAG AGGGCAGGTTTCTAGAAAGTGCCACCAGTGGGGAGGCGCCACAACTTCAC TGCCATTTTGTGAGGTGCCGCCGTCTCTCCTCCAGCAAGGAAACAATGAC CGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAAACGTC CCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGGCCCTG TTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTGCCAT GTCCAAAGCAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAAT TGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGATGATG CAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGCAGTTT CTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAAAAGCC AACAAGAAATTAATGCTGATATAAAACGTAAATTAGTGAAGGAACTCCGA TGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCA AGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAAGGAAG CAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGAAACTG AAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACACCCCAAA TGCATAATCTCATTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTT TCTACAATGGAGCAGGATATTGCTGAAGTCTCCTGGCATATGTTACCGAA TCAACTGGCCTTCCAGAGGCTAAGAAATTTCTGTTAGTAAAAGATGTTCT TTTTCCCAAA	chrX	135841497	135859538
a0001c0004t0001	0/0	1010	1	0	0	1	CT45A8_chrX_135841497_135859538	CT45A8	AGTGT others(1005): Show AGTGTTCGGCTGGGGCAGGCACGCTGTGGCTGGCTACTTCCCTTCCTCCC ATCCCCCTTGGGCCAAACGGGATCGGTGCTTCTGGTGAGACGCCTCCCCA TGCACATCACTCCCAGGTGCCCTAGGGGGCACATTTCCCACAACTCCCAG AGGGCAGGTTTCTAGAAAGTGCCACCAGTGGGGAGGCGCCACAACTTCAC TGCCATTTTGTGAGGTGCCGCCGTCTCTCCTCCAGCAAGGAAACAATGAC CGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAAACGTC CCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGGCCCTG TTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTGCCAT GTCCAAAGCAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAAT TGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGATGATG CAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGCAGTTT CTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAAAAGCC AACAAGAAATTAATGCTGATATTAAACGTAAATTAGTGAAGGAACTCCGA TGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCA AGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAAGGAAG CAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGAAACTG AAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACACCCCAAA TGCATAATCTCATTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTT TCTACAATGGAGCAGGATATTGCTGAAGTCTCCTGGCATATGTTACCGAA TCAACTGGCCTTCCAGAGGCTAAGAAATTTCTGTTAGTAAAAGATGTTCT TTTTCCCAAA	chrX	135841497	135859538
a0002c0003t0001	0/0	1010	1	1	0	0	CT45A8_chrX_135841497_135859538	CT45A8	AGTGT others(1005): Show AGTGTTCGGCTGGGGCAGGCACGCTGTGGCTGGCTACTTCCCTTCCTCCC ATCCCCCTTGGGCCAAACGGGATCGGTGCTTCTGGTGAGACGCCTCCCCA TGCACATCACTCCCAGGTGCCCTAGGGGGCACATTTCCCACAACTCCCAG AGGGCAGGTTTCTAGAAAGTGCCACCAGTGGGGAGGCGCCACAACTTCAC TGCCATTTTGTGAGGTGCCGCCGTCTCTCCTCCAGCAAGGAAACAATGAC CGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAAACGTC CCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGGCCCTG TTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTGCCAT GTCCAAAGAAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAAT TGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGATGATG CAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGCAGTTT CTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTTCTCTCCCAAAAGCC AACAAGAAATTAATGCTGATATAAAACGTCAATTAGTGAAGGAACTCCGA TGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCA AGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAAGGAAG CAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGAAACTG AAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACACCCCAAA TGCATAATCTCATTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTT TCTACAATGGAGCAGGATATTGCTGAAGTCTCCTGGCATATGTTACCGAA TCAACTGGCCTTCCAGAGGCTAAGAAATTTCTGTTAGTAAAAGATGTTCT TTTTCCCAAA	chrX	135841497	135859538
a0003c0002t0001	0/0	1010	1	0	1	0	CT45A8_chrX_135841497_135859538	CT45A8	AGTGT others(1005): Show AGTGTTCGGCTGGGGCAGGCACGCTGTGGCTGGCTACTTCCCTTCCTCCC ATCCCCCTTGGGCCAAACGGGATCGGTGCTTCTGGTGAGACGCCTCCCCA TGCACATCACTCCCAGGTGCCCTAGGGGGCACATTTCCCACAACTCCCAG AGGGCAGGTTTCTAGAAAGTGCCACCAGTGGGGAGGCGCCACAACTTCAC TGCCATTTTGTGAGGTGCCGCCGTCTCTCCTCCAGCAAGGAAACAATGAC CGATAAAACAGAGAAGGTGGCTGTAGATCCTGAAACTGTGTTTAAACGTC CCAGGGAATGTGACAGTCCTTCGTATCAGAAAAGGCAGAGGATGGCCCTG TTGGCAAGGAAACAAGGAGCAGGAGACAGCCTTATTGCAGGCTCTGCCAT GTCCAAAGAAAAGAAGCTTATGACAGGACATGCTATTCCACCCAGCCAAT TGGATTCTCAGATTGATGACTTCACTGGTTTCAGCAAAGATAGGATGATG CAGAAACCTGGTAGCAATGCACCTGTGGGAGGAAACGTTACCAGCAGTTT CTCTGGAGATGACCTAGAATGCAGAGAAACAGCCTCCTCTCCCAAAAGCC AACAAGAAATTAATGCTGATATAAAACGTAAATTAGTGAAGGAACTCCGA TGCGTTGGACAAAAATATGAAAAAATCTTCGAAATGCTTGAAGGAGTGCA AGGACCTACTGCAGTCAGGAAACGATTTTTTGAATCCATCATCAAGGAAG CAGCAAGATGTATGAGACGAGACTTTGTTAAGCACCTTAAGAAGAAACTG AAACGTATGATTTGAGAATACTTGTCCCTGGAGGATTATCACACCCCAAA TGCATAATCTCATTAATGATTGAGGAGAGAAAAGGATCAGATTGCTGTTT TCTACAATGGAGCAGGATATTGCTGAAGTCTCCTGGCATATGTTACCGAA TCAACTGGCCTTCCAGAGGCTAAGAAATTTCTGTTAGTAAAAGATGTTCT TTTTCCCAAA	chrX	135841497	135859538

actghapid	grch38/ chm13v2	total	AFR	EAS	EUR	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	2	0	2	0	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
a0001c0001t0001g0005	0/0	1	0	1	0	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
a0001c0001t0001g0006	0/0	1	0	1	0	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
a0001c0001t0002g0002	0/0	1	1	0	0	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
a0001c0004t0001g0003	0/0	1	0	0	1	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
a0002c0003t0001g0007	0/0	1	1	0	0	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
a0003c0002t0001g0004	0/0	1	0	1	0	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00280	hp1	a0001	c0004	t0001	g0003	EUR	FIN	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
HG00438	hp1	a0001	c0001	t0001	g0005	EAS	CHS	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
HG00438	hp2	a0003	c0002	t0001	g0004	EAS	CHS	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
HG03139	hp1	a0001	c0001	t0002	g0002	AFR	ESN	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
NA18983	hp1	a0001	c0001	t0001	g0006	EAS	JPT	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
NA18990	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
NA19079	hp2	a0001	c0001	t0001	g0001	EAS	JPT	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538
HG02486	hp1	a0002	c0003	t0001	g0007	AFR	ACB	CT45A8_chrX_135841497_135859538	CT45A8	chrX	135841497	135859538

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chrX:135848479	G G	T T	2	a0001 a0003 a0001 a0003	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	missense_variant	MODERATE	c.385C>A c.385C>A	p.Gln129Lys p.Gln129Lys	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	3/5	630/1010	385/570	129/189	chrX	135848479
chrX:135848523	A A	G G	2	a0001 a0003 a0001 a0003	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	missense_variant	MODERATE	c.341T>C c.341T>C	p.Phe114Ser p.Phe114Ser	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	3/5	586/1010	341/570	114/189	chrX	135848523
chrX:135850620	T T	G G	1	a0001 a0001	6	HG00280.hp1 HG00438.hp1 HG03139.hp1 others(3): Show HG00280.hp1 HG00438.hp1 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	missense_variant	MODERATE	c.164A>C c.164A>C	p.Glu55Ala p.Glu55Ala	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/5	409/1010	164/570	55/189	chrX	135850620

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:135848486	T T	A A	1	a0001c0004 a0001c0004	1	HG00280.hp1 HG00280.hp1	synonymous_variant	LOW	c.378A>T c.378A>T	p.Ile126Ile p.Ile126Ile	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	3/5	623/1010	378/570	126/189			chrX	135848486

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:135854464	C C	G G	1	a0001c0001t0002 a0001c0001t0002	1	HG03139.hp1 HG03139.hp1	5_prime_UTR_variant	MODIFIER	c.-171G>C c.-171G>C		CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/5				3681		chrX	135854464

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:135846752	GA GA	G G	2	a0001c0001t0001g0006 a0003c0002t0001g0004 a0001c0001t0001g0006 a0003c0002t0001g0004	2	HG00438.hp2 NA18983.hp1 HG00438.hp2 NA18983.hp1	splice_region_variant&intron_variant	LOW	c.513-4delT c.513-4delT	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135846752
chrX:135846896	G G	A A	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.513-147C>T c.513-147C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135846896
chrX:135846948	G G	A A	3	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006	4	HG00438.hp1 NA18983.hp1 NA18990.hp2 others(1): Show HG00438.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.513-199C>T c.513-199C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135846948
chrX:135847010	T T	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.513-261A>T c.513-261A>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847010
chrX:135847199	C C	T T	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.513-450G>A c.513-450G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847199
chrX:135847268	G G	A A	1	a0003c0002t0001g0004 a0003c0002t0001g0004	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.513-519C>T c.513-519C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847268
chrX:135847270	T T	G G	1	a0003c0002t0001g0004 a0003c0002t0001g0004	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.513-521A>C c.513-521A>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847270
chrX:135847271	C C	T T	1	a0003c0002t0001g0004 a0003c0002t0001g0004	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.513-522G>A c.513-522G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847271
chrX:135847455	A A	T T	1	a0001c0004t0001g0003 a0001c0004t0001g0003	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.512+517T>A c.512+517T>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847455
chrX:135847508	C C	T T	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.512+464G>A c.512+464G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847508
chrX:135847560	TCC TCC	T T	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.512+410_512+411del others(2): Show c.512+410_512+411delGG	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847560
chrX:135847564	C C	T T	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.512+408G>A c.512+408G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847564
chrX:135847765	A A	T T	1	a0001c0004t0001g0003 a0001c0004t0001g0003	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.512+207T>A c.512+207T>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847765
chrX:135847766	T T	A A	1	a0001c0004t0001g0003 a0001c0004t0001g0003	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.512+206A>T c.512+206A>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847766
chrX:135847767	G G	T T	1	a0001c0004t0001g0003 a0001c0004t0001g0003	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.512+205C>A c.512+205C>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847767
chrX:135847848	G G	A A	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.512+124C>T c.512+124C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	4/4	chrX	135847848
chrX:135848077	GA GA	G G	5	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0003c0002t0001g0004	6	HG00438.hp1 HG00438.hp2 HG03139.hp1 others(3): Show HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.419-13delT c.419-13delT	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	3/4	chrX	135848077
chrX:135848804	A A	C C	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	HG00438.hp1 HG00438.hp1	intron_variant	MODIFIER	c.170-110T>G c.170-110T>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135848804
chrX:135848881	A A	C C	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.170-187T>G c.170-187T>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135848881
chrX:135849249	T T	C C	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.170-555A>G c.170-555A>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135849249
chrX:135849379	T T	C C	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.170-685A>G c.170-685A>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135849379
chrX:135849380	G G	A A	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.170-686C>T c.170-686C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135849380
chrX:135849665	C C	T T	1	a0003c0002t0001g0004 a0003c0002t0001g0004	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.169+950G>A c.169+950G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135849665
chrX:135850021	G G	A A	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.169+594C>T c.169+594C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850021
chrX:135850043	A A	AT AT	5	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0003c0002t0001g0004	6	HG00438.hp1 HG00438.hp2 HG03139.hp1 others(3): Show HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.169+571dupA c.169+571dupA	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850043
chrX:135850049	A A	G G	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	HG00438.hp1 HG00438.hp1	intron_variant	MODIFIER	c.169+566T>C c.169+566T>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850049
chrX:135850373	C C	G G	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 a0003c0002t0001g0004	5	HG00438.hp1 HG00438.hp2 HG03139.hp1 others(2): Show HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.169+242G>C c.169+242G>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850373
chrX:135850423	T T	TAA TAA	3	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002	4	HG00438.hp1 HG03139.hp1 NA18990.hp2 others(1): Show HG00438.hp1 HG03139.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.169+190_169+191dup others(2): Show c.169+190_169+191dupTT	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850423
chrX:135850486	A A	G G	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.169+129T>C c.169+129T>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850486
chrX:135850561	T T	C C	1	a0003c0002t0001g0004 a0003c0002t0001g0004	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.169+54A>G c.169+54A>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850561
chrX:135850595	G G	A A	1	a0001c0004t0001g0003 a0001c0004t0001g0003	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.169+20C>T c.169+20C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850595
chrX:135850604	G G	A A	3	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002	4	HG00438.hp1 HG03139.hp1 NA18990.hp2 others(1): Show HG00438.hp1 HG03139.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.169+11C>T c.169+11C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	2/4	chrX	135850604
chrX:135851162	A A	G G	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 a0003c0002t0001g0004	5	HG00438.hp1 HG00438.hp2 HG03139.hp1 others(2): Show HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-373T>C c.-6-373T>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135851162
chrX:135851438	A A	G G	1	a0003c0002t0001g0004 a0003c0002t0001g0004	1	HG00438.hp2 HG00438.hp2	intron_variant	MODIFIER	c.-6-649T>C c.-6-649T>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135851438
chrX:135851737	A A	C C	5	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	6	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(3): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-948T>G c.-6-948T>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135851737
chrX:135851785	C C	T T	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-996G>A c.-6-996G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135851785
chrX:135851839	T T	G G	2	a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0001t0001g0006 a0001c0001t0002g0002	2	HG03139.hp1 NA18983.hp1 HG03139.hp1 NA18983.hp1	intron_variant	MODIFIER	c.-6-1050A>C c.-6-1050A>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135851839
chrX:135851976	A A	AGCAATTC others(28): Show AGCAATTCTGTATAATGAATGGCATTATACAGAATG	1	a0001c0001t0001g0001 a0001c0001t0001g0001	2	NA18990.hp2 NA19079.hp2 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-1222_-6-1188dup others(35): Show c.-6-1222_-6-1188dupCATTCTGTATAATGCCATTCATTATACAGA ATTGC	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135851976
chrX:135852057	A A	G G	2	a0001c0001t0002g0002 a0001c0004t0001g0003 a0001c0001t0002g0002 a0001c0004t0001g0003	2	HG00280.hp1 HG03139.hp1 HG00280.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-6-1268T>C c.-6-1268T>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852057
chrX:135852084	T T	C C	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0003c0002t0001g0004	5	HG00438.hp1 HG00438.hp2 NA18983.hp1 others(2): Show HG00438.hp1 HG00438.hp2 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-1295A>G c.-6-1295A>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852084
chrX:135852187	T T	C C	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0003c0002t0001g0004	5	HG00438.hp1 HG00438.hp2 NA18983.hp1 others(2): Show HG00438.hp1 HG00438.hp2 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-1398A>G c.-6-1398A>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852187
chrX:135852189	T T	G G	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0003c0002t0001g0004	5	HG00438.hp1 HG00438.hp2 NA18983.hp1 others(2): Show HG00438.hp1 HG00438.hp2 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-1400A>C c.-6-1400A>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852189
chrX:135852209	A A	T T	1	a0001c0004t0001g0003 a0001c0004t0001g0003	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.-6-1420T>A c.-6-1420T>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852209
chrX:135852210	C C	CTT CTT	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0003c0002t0001g0004	5	HG00438.hp1 HG00438.hp2 NA18983.hp1 others(2): Show HG00438.hp1 HG00438.hp2 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-1423_-6-1422dup others(2): Show c.-6-1423_-6-1422dupAA	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852210
chrX:135852210	C C	T T	1	a0001c0004t0001g0003 a0001c0004t0001g0003	1	HG00280.hp1 HG00280.hp1	intron_variant	MODIFIER	c.-6-1421G>A c.-6-1421G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852210
chrX:135852225	A A	G G	5	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0003c0002t0001g0004	6	HG00438.hp1 HG00438.hp2 HG03139.hp1 others(3): Show HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-1436T>C c.-6-1436T>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852225
chrX:135852415	A A	C C	5	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0003c0002t0001g0004	6	HG00438.hp1 HG00438.hp2 HG03139.hp1 others(3): Show HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-6-1626T>G c.-6-1626T>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852415
chrX:135852600	G G	A A	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+1700C>T c.-7+1700C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852600
chrX:135852685	C C	T T	1	a0001c0001t0001g0001 a0001c0001t0001g0001	2	NA18990.hp2 NA19079.hp2 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+1615G>A c.-7+1615G>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852685
chrX:135852704	A A	G G	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+1596T>C c.-7+1596T>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852704
chrX:135852946	G G	A A	1	a0002c0003t0001g0007 a0002c0003t0001g0007	1	HG02486.hp1 HG02486.hp1	intron_variant	MODIFIER	c.-7+1354C>T c.-7+1354C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135852946
chrX:135853091	A A	T T	1	a0001c0001t0002g0002 a0001c0001t0002g0002	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-7+1209T>A c.-7+1209T>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135853091
chrX:135853261	T T	C C	4	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0003c0002t0001g0004	5	HG00438.hp1 HG00438.hp2 NA18983.hp1 others(2): Show HG00438.hp1 HG00438.hp2 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+1039A>G c.-7+1039A>G	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135853261
chrX:135853446	TCAAC TCAAC	T T	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+850_-7+853delGT others(2): Show c.-7+850_-7+853delGTTG	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135853446
chrX:135853649	GCATC GCATC	G G	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+647_-7+650delGA others(2): Show c.-7+647_-7+650delGATG	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135853649
chrX:135853882	A A	T T	5	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0004t0001g0003 a0003c0002t0001g0004	6	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(3): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+418T>A c.-7+418T>A	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135853882
chrX:135854013	G G	A A	1	a0001c0001t0002g0002 a0001c0001t0002g0002	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-7+287C>T c.-7+287C>T	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135854013
chrX:135854044	C C	G G	6	a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0002 a0001c0004t0001g0003 a0003c0002t0001g0004	7	HG00280.hp1 HG00438.hp1 HG00438.hp2 others(4): Show HG00280.hp1 HG00438.hp1 HG00438.hp2 HG03139.hp1 NA18983.hp1 NA18990.hp2 NA19079.hp2	intron_variant	MODIFIER	c.-7+256G>C c.-7+256G>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135854044
chrX:135854076	C C	G G	1	a0001c0001t0002g0002 a0001c0001t0002g0002	1	HG03139.hp1 HG03139.hp1	intron_variant	MODIFIER	c.-7+224G>C c.-7+224G>C	CT45A8	ENSG00000278085.5	transcript	ENST00000611660.5	protein_coding	1/4	chrX	135854076

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CT45A8_chrX_135841497_135859538 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 3)

Coding Level Haplotype Info (Total: 4)

Transcript Level Haplotype Info (Total: 5)

Genebody Level Haplotype Info (Total: 7)

Haplotype Details by Sample (Haploid Level) (Total: 8)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 3)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 1)

Transcript Level Haplotype Variants (Exon) (Total: 1)

Genebody Level Haplotype Variants (Intron) (Total: 59)

Annotation (Repeats)

Annotation (SNP Array)