Joint Open Genome and Omics Platform (JoGo)

Search by Genic region

Item	Value
geneid	86614
ensemblid	ENSG00000172468.14
hgncid	18568
symbol	HSFY1
name	heat shock transcription factor Y-linked 1
refseq_nuc	NM_033108.3
refseq_prot	NP_149099.2
ensembl_nuc	ENST00000307393.3
ensembl_prot	ENSP00000303599.2
mane_status	MANE Select
chr	chrY
start	18546720
end	18548592
strand	+
ver	v1.2
region	chrY:18546720-18548592
region5000	chrY:18541720-18553592
regionname0	HSFY1_chrY_18546720_18548592
regionname5000	HSFY1_chrY_18541720_18553592

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	401	46	8	7	20	2	9	15	HSFY1_chrY_18541720_18553592	HSFY1	MAHVS others(396): Show MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQV LSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDE NGTCIVINEELFKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNF QRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGYPQLLVRVKRRIGVKNA SPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFSASKNLNMPLT RESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYP LVSVNEAPYRNMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNY N	chrY	18541720	18553592
a0002	0/0	16	1	0	0	1	0	0	0	HSFY1_chrY_18541720_18553592	HSFY1	MAHVS others(11): Show MAHVSSETQDVPPKMN	chrY	18541720	18553592
a0003	0/0	187	1	0	1	0	0	0	0	HSFY1_chrY_18541720_18553592	HSFY1	MAHVS others(182): Show MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQV LSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDE NGTCIVINEELFKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNF QRSAFLATFLSEEKESSVLSKLKFYYNPNSSVAIPNF	chrY	18541720	18553592
a0004	0/0	104	1	0	0	1	0	0	1	HSFY1_chrY_18541720_18553592	HSFY1	MAHVS others(99): Show MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQV LSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWMR MELA	chrY	18541720	18553592
a0005	0/0	187	1	0	0	0	0	1	0	HSFY1_chrY_18541720_18553592	HSFY1	MAHVS others(182): Show MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQV LSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDE NGTCIVINEELFKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNF QRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGYPNF	chrY	18541720	18553592

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1203	46	8	7	20	2	9	HSFY1_chrY_18541720_18553592	HSFY1	ATGGC others(1198): Show ATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATT AACTGCTTCAGAAGCCTCCACTAGGTCTCCATTGTGTGAACACACCTTCC CTGGGGACTCAGACTTACGGTCAATGATTGAAGAACATGCTTTTCAGGTT TTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCTC TGAGCCAGATAAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAAC TTTGGAAAATAGTGGAAAGTGACCAATTCAAGTCTATTTCATGGGATGAG AATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAATTTT GGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTT TTGTTCGACAGCTCAACCTTTATGGATTTAGTAAAATTCAACAGAATTTT CAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAATCGTC TGTCTTAAGCAAGTTAAAGTTCTATTATAATCCAAATTTCAAGCGTGGCT ATCCCCAACTTTTAGTAAGAGTGAAGAGAAGAATTGGTGTTAAAAATGCT TCACCTATATCTACTTTATTCAACGAAGATTTCAACAAGAAGCATTTTAG AGCAGGGGCTAACATGGAGAATCATAATTCTGCCTTAGCTGCTGAAGCTA GTGAAGAAAGTTTATTTTCAGCCTCTAAAAATTTAAATATGCCTCTAACA AGGGAATCTTCTGTCAGACAGATAATTGCAAATTCATCTGTCCCCATTAG AAGTGGTTTCCCTCCTCCTTCACCTTCAACCTCAGTTGGACCATCAGAAC AAATTGCAACAGATCAACATGCTATTTTAAATCAGTTGACCACTATTCAT ATGCACTCTCATAGTACCTACATGCAAGCAAGGGGCCACATTGTGAATTT TATTACAACCACAACTTCTCAATACCACATCATATCTCCCTTACAAAATG GTTATTTTGGGCTGACAGTGGAACCATCTGCTGTTCCCACACGATATCCT CTGGTATCAGTCAATGAGGCTCCATATCGTAACATGCTACCAGCAGGCAA CCCGTGGTTGCAAATGCCTACGATCGCTGATAGATCAGCTGCCCCTCATT CCAGGCTAGCTCTTCAACCATCACCACTGGACAAATATCACCCTAATTAC AAC	chrY	18541720	18553592
a0002c0002	0/0	1206	1	0	0	1	0	0	HSFY1_chrY_18541720_18553592	HSFY1	ATGGC others(1201): Show ATGGCACATGTTTCTTCAGAAACTCAAGATGTTCCCCCAAAGATGAATTA ACTGCTTCAGAAGCCTTCCACTAGGTCTCCATTGTGTGAACACACCTTCC CTGGGGACTCAGACTTACGGTCAATGATTGAAGAACATGCTTTTCAGGTT TTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCTC TGAGCCAGATAAAGATGATGATTTTCTTTTCTCTGAACTTTCCCAGGAAA CTTTGGAAAATAGTGGAAAGTGACCAATTCAAGTCTATTTCATGGGATGA GAATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAATTT TGGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGT TTTTGTTCGAACAGCTCAACCTTTATGGATTTAGTAAAATTCAACAGAAT TTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAATC GTCTGTCTTAAGCAAGTTAAAGTTCTATTATAATCCAAATTTCAAGCGTG GCTATCCCCAACTTTTAGTAAGAGTGAAGAGAAGAATTGGTGTTAAAAAT GCTTCACCTATATCTACTTTATTCAACGAAGATTTCAACAAGAAGCATTT TAGAGCAGGGGCTAACATGGAGAATCATAATTCTGCCTTAGCTGCTGAAG CTAGTGAAGAAAGTTTATTTTCAGCCTCTAAAAATTTAAATATGCCTCTA ACAAGGGAATCTTCTGTCAGACAGATAATTGCAAATTCATCTGTCCCCAT TAGAAGTGGTTTCCCTCCTCCTTCACCTTCAACCTCAGTTGGACCATCAG AACAAATTGCAACAGATCAACATGCTATTTTAAATCAGTTGACCACTATT CATATGCACTCTCATAGTACCTACATGCAAGCAAGGGGCCACATTGTGAA TTTTATTACAACCACAACTTCTCAATACCACATCATATCTCCCTTACAAA ATGGTTATTTTGGGCTGACAGTGGAACCATCTGCTGTTCCCACACGATAT CCTCTGGTATCAGTCAATGAGGCTCCATATCGTAACATGCTACCAGCAGG CAACCCGTGGTTGCAAATGCCTACGATCGCTGATAGATCAGCTGCCCCTC ATTCCAGGCTAGCTCTTCAACCATCACCACTGGACAAATATCACCCTAAT TACAAC	chrY	18541720	18553592
a0003c0004	0/0	1201	1	0	1	0	0	0	HSFY1_chrY_18541720_18553592	HSFY1	ATGGC others(1196): Show ATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATT AACTGCTTCAGAAGCCTCCACTAGGTCTCCATTGTGTGAACACACCTTCC CTGGGGACTCAGACTTACGGTCAATGATTGAAGAACATGCTTTTCAGGTT TTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCTC TGAGCCAGATAAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAAC TTTGGAAAATAGTGGAAAGTGACCAATTCAAGTCTATTTCATGGGATGAG AATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAATTTT GGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTT TTGTTCGACAGCTCAACCTTTATGGATTTAGTAAAATTCAACAGAATTTT CAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAATCGTC TGTCTTAAGCAAGTTAAAGTTCTATTATAATCCAAATTCAAGCGTGGCTA TCCCCAACTTTTAGTAAGAGTGAAGAGAAGAATTGGTGTTAAAAATGCTT CACCTATATCTACTTTATTCAACGAAGATTTCAACAAGAAGCATTTTAGA GCAGGGGCTAACATGGAGAATCATAATTCTGCCTTAGCTGCTGAAGCTAG TGAAGAAAGTTTATTTTCAGCCTCTAAAAATTTAAATATGCCTCTAACAA GGGAATCTTCTGTCAGACAGATAATTGCAAATTCATCTGTCCCCATTAGA AGTGGTTTCCCTCCTCCTTCACCTTCAACCTCAGTTGGACCATCAGAACA AATTGCAACAGATCAACATGCTATTTTAAATCAGTTGACCACTATTCATA TGCACTCTCATAGTACCTACATGCAAGCAAGGGGCCACATTGTGAATTTT ATTACAACCACAACTTCTCAATACCACATCATATCTCCCTTACAAAATGG TTATTTTGGGCTGACAGTGGAACCATCTGCTGTTCCCACACGATATCCTC TGGTATCAGTCAATGAGGCTCCATATCGTAACATGCTACCAGCAGGCAAC CGTGGTTGCAAATGCCTACGATCGCTGATAGATCAGCTGCCCCTCATTCC AGGCTAGCTCTTCAACCATCACCACTGGACAAATATCACCCTAATTACAA C	chrY	18541720	18553592
a0004c0003	0/0	1202	1	0	0	1	0	0	HSFY1_chrY_18541720_18553592	HSFY1	ATGGC others(1197): Show ATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATT AACTGCTTCAGAAGCCTCCACTAGGTCTCCATTGTGTGAACACACCTTCC CTGGGGACTCAGACTTACGGTCAATGATTGAAGAACATGCTTTTCAGGTT TTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCTC TGAGCCAGATAAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAAC TTTGGAAAATAGTGGAAAGTGACCAATTCAAGTCTATTTCATGGATGAGA ATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAATTTTG GAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTTT TGTTCGACAGCTCAACCTTTATGGATTTAGTAAAATTCAACAGAATTTTC AAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAATCGTCT GTCTTAAGCAAGTTAAAGTTCTATTATAATCCAAATTTCAAGCGTGGCTA TCCCCAACTTTTAGTAAGAGTGAAGAGAAGAATTGGTGTTAAAAATGCTT CACCTATATCTACTTTATTCAACGAAGATTTCAACAAGAAGCATTTTAGA GCAGGGGCTAACATGGAGAATCATAATTCTGCCTTAGCTGCTGAAGCTAG TGAAGAAAGTTTATTTTCAGCCTCTAAAAATTTAAATATGCCTCTAACAA GGGAATCTTCTGTCAGACAGATAATTGCAAATTCATCTGTCCCCATTAGA AGTGGTTTCCCTCCTCCTTCACCTTCAACCTCAGTTGGACCATCAGAACA AATTGCAACAGATCAACATGCTATTTTAAATCAGTTGACCACTATTCATA TGCACTCTCATAGTACCTACATGCAAGCAAGGGGCCACATTGTGAATTTT ATTACAACCACAACTTCTCAATACCACATCATATCTCCCTTACAAAATGG TTATTTTGGGCTGACAGTGGAACCATCTGCTGTTCCCACACGATATCCTC TGGTATCAGTCAATGAGGCTCCATATCGTAACATGCTACCAGCAGGCAAC CCGTGGTTGCAAATGCCTACGATCGCTGATAGATCAGCTGCCCCTCATTC CAGGCTAGCTCTTCAACCATCACCACTGGACAAATATCACCCTAATTACA AC	chrY	18541720	18553592
a0005c0005	0/0	1201	1	0	0	0	0	1	HSFY1_chrY_18541720_18553592	HSFY1	ATGGC others(1196): Show ATGGCACATGTTTCTTCAGAAACTCAAGATGTTTCCCCCAAAGATGAATT AACTGCTTCAGAAGCCTCCACTAGGTCTCCATTGTGTGAACACACCTTCC CTGGGGACTCAGACTTACGGTCAATGATTGAAGAACATGCTTTTCAGGTT TTGTCACAAGGATCCTTGTTAGAAAGTCCAAGTTACACAGTTTGTGTCTC TGAGCCAGATAAAGATGATGATTTTCTTTCTCTGAACTTTCCCAGGAAAC TTTGGAAAATAGTGGAAAGTGACCAATTCAAGTCTATTTCATGGGATGAG AATGGAACTTGCATAGTGATTAATGAAGAACTCTTCAAGAAAGAAATTTT GGAAACAAAGGCTCCTTACAGAATATTTCAAACTGATGCTATCAAAAGTT TTGTTCGACAGCTCAACCTTTATGGATTTAGTAAAATTCAACAGAATTTT CAAAGATCTGCCTTTCTAGCCACCTTTCTGTCAGAAGAGAAAGAATCGTC TGTCTTAAGCAAGTTAAAGTTCTATTATAATCCAAATTTCAAGCGTGGCT ATCCCAACTTTTAGTAAGAGTGAAGAGAAGAATTGGTGTTAAAATGCTTC ACCTATATCTACTTTATTCAACGAAGATTTCAACAAGAAGCATTTTAGAG CAGGGGCTAACATGGAGAATCATAATTCTGCCTTAGCTGCTGAAGCTAGT GAAGAAAGTTTATTTTCAGCCTCTAAAAATTTAAATATGCCTCTAACAAG GGAATCTTCTGTCAGACAGATAATTGCAAATTCATCTGTCCCCATTAGAA GTGGTTTCCCTCCTCCTTCACCTTCAACCTCAGTTGGACCATCAGAACAA ATTGCAACAGATCAACATGCTATTTTAAATCAGTTGACCACTATTCATAT GCACTCTCATAGTACCTACATGCAAGCAAGGGGCCACATTGTGAATTTTA TTACAACCACAACTTCTCAATACCACATCATATCTCCCTTACAAAATGGT TATTTTGGGCTGACAGTGGAACCATCTGCTGTTCCCACACGATATCCTCT GGTATCAGTCAATGAGGCTCCATATCGTAACATGCTACCAGCAGGCAACC CGTGGTTGCAAATGCCTACGATCGCTGATAGATCAGCTGCCCCTCATTCC AGGCTAGCTCTTCAACCATCACCACTGGACAAATATCACCCTAATTACAA C	chrY	18541720	18553592

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1395	46	8	7	20	2	9	HSFY1_chrY_18541720_18553592	HSFY1	AGCAT others(1390): Show AGCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGTAGATA AAGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGT TTCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTCCACTAGGTCTCCAT TGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAA GAACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAG TTACACAGTTTGTGTCTCTGAGCCAGATAAAGATGATGATTTTCTTTCTC TGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCAAG TCTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACT CTTCAAGAAAGAAATTTTGGAAACAAAGGCTCCTTACAGAATATTTCAAA CTGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTTATGGATTTAGT AAAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTC AGAAGAGAAAGAATCGTCTGTCTTAAGCAAGTTAAAGTTCTATTATAATC CAAATTTCAAGCGTGGCTATCCCCAACTTTTAGTAAGAGTGAAGAGAAGA ATTGGTGTTAAAAATGCTTCACCTATATCTACTTTATTCAACGAAGATTT CAACAAGAAGCATTTTAGAGCAGGGGCTAACATGGAGAATCATAATTCTG CCTTAGCTGCTGAAGCTAGTGAAGAAAGTTTATTTTCAGCCTCTAAAAAT TTAAATATGCCTCTAACAAGGGAATCTTCTGTCAGACAGATAATTGCAAA TTCATCTGTCCCCATTAGAAGTGGTTTCCCTCCTCCTTCACCTTCAACCT CAGTTGGACCATCAGAACAAATTGCAACAGATCAACATGCTATTTTAAAT CAGTTGACCACTATTCATATGCACTCTCATAGTACCTACATGCAAGCAAG GGGCCACATTGTGAATTTTATTACAACCACAACTTCTCAATACCACATCA TATCTCCCTTACAAAATGGTTATTTTGGGCTGACAGTGGAACCATCTGCT GTTCCCACACGATATCCTCTGGTATCAGTCAATGAGGCTCCATATCGTAA CATGCTACCAGCAGGCAACCCGTGGTTGCAAATGCCTACGATCGCTGATA GATCAGCTGCCCCTCATTCCAGGCTAGCTCTTCAACCATCACCACTGGAC AAATATCACCCTAATTACAACTGATCTGCCATTAAAAGAGGACCAGATTA TGAATGACAACAGAGACTAACATTTACATTGACAAAAAACCCTAAAAATT TCTGCAATTATCTTATTGAACAATAAAATTGCATGTTTACTTCTA	chrY	18541720	18553592
a0002c0002t0001	0/0	1398	1	0	0	1	0	0	HSFY1_chrY_18541720_18553592	HSFY1	AGCAT others(1393): Show AGCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGTAGATA AAGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGT TCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTTCCACTAGGTCTCCAT TGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAA GAACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAG TTACACAGTTTGTGTCTCTGAGCCAGATAAAGATGATGATTTTCTTTTCT CTGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCAA GTCTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAAC TCTTCAAGAAAGAAATTTTGGAAACAAAGGCTCCTTACAGAATATTTCAA ACTGATGCTATCAAAAGTTTTTGTTCGAACAGCTCAACCTTTATGGATTT AGTAAAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCT GTCAGAAGAGAAAGAATCGTCTGTCTTAAGCAAGTTAAAGTTCTATTATA ATCCAAATTTCAAGCGTGGCTATCCCCAACTTTTAGTAAGAGTGAAGAGA AGAATTGGTGTTAAAAATGCTTCACCTATATCTACTTTATTCAACGAAGA TTTCAACAAGAAGCATTTTAGAGCAGGGGCTAACATGGAGAATCATAATT CTGCCTTAGCTGCTGAAGCTAGTGAAGAAAGTTTATTTTCAGCCTCTAAA AATTTAAATATGCCTCTAACAAGGGAATCTTCTGTCAGACAGATAATTGC AAATTCATCTGTCCCCATTAGAAGTGGTTTCCCTCCTCCTTCACCTTCAA CCTCAGTTGGACCATCAGAACAAATTGCAACAGATCAACATGCTATTTTA AATCAGTTGACCACTATTCATATGCACTCTCATAGTACCTACATGCAAGC AAGGGGCCACATTGTGAATTTTATTACAACCACAACTTCTCAATACCACA TCATATCTCCCTTACAAAATGGTTATTTTGGGCTGACAGTGGAACCATCT GCTGTTCCCACACGATATCCTCTGGTATCAGTCAATGAGGCTCCATATCG TAACATGCTACCAGCAGGCAACCCGTGGTTGCAAATGCCTACGATCGCTG ATAGATCAGCTGCCCCTCATTCCAGGCTAGCTCTTCAACCATCACCACTG GACAAATATCACCCTAATTACAACTGATCTGCCATTAAAAGAGGACCAGA TTATGAATGACAACAGAGACTAACATTTACATTGACAAAAAACCCTAAAA ATTTCTGCAATTATCTTATTGAACAATAAAATTGCATGTTTACTTCTA	chrY	18541720	18553592
a0003c0004t0001	0/0	1393	1	0	1	0	0	0	HSFY1_chrY_18541720_18553592	HSFY1	AGCAT others(1388): Show AGCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGTAGATA AAGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGT TTCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTCCACTAGGTCTCCAT TGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAA GAACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAG TTACACAGTTTGTGTCTCTGAGCCAGATAAAGATGATGATTTTCTTTCTC TGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCAAG TCTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACT CTTCAAGAAAGAAATTTTGGAAACAAAGGCTCCTTACAGAATATTTCAAA CTGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTTATGGATTTAGT AAAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTC AGAAGAGAAAGAATCGTCTGTCTTAAGCAAGTTAAAGTTCTATTATAATC CAAATTCAAGCGTGGCTATCCCCAACTTTTAGTAAGAGTGAAGAGAAGAA TTGGTGTTAAAAATGCTTCACCTATATCTACTTTATTCAACGAAGATTTC AACAAGAAGCATTTTAGAGCAGGGGCTAACATGGAGAATCATAATTCTGC CTTAGCTGCTGAAGCTAGTGAAGAAAGTTTATTTTCAGCCTCTAAAAATT TAAATATGCCTCTAACAAGGGAATCTTCTGTCAGACAGATAATTGCAAAT TCATCTGTCCCCATTAGAAGTGGTTTCCCTCCTCCTTCACCTTCAACCTC AGTTGGACCATCAGAACAAATTGCAACAGATCAACATGCTATTTTAAATC AGTTGACCACTATTCATATGCACTCTCATAGTACCTACATGCAAGCAAGG GGCCACATTGTGAATTTTATTACAACCACAACTTCTCAATACCACATCAT ATCTCCCTTACAAAATGGTTATTTTGGGCTGACAGTGGAACCATCTGCTG TTCCCACACGATATCCTCTGGTATCAGTCAATGAGGCTCCATATCGTAAC ATGCTACCAGCAGGCAACCGTGGTTGCAAATGCCTACGATCGCTGATAGA TCAGCTGCCCCTCATTCCAGGCTAGCTCTTCAACCATCACCACTGGACAA ATATCACCCTAATTACAACTGATCTGCCATTAAAAGAGGACCAGATTATG AATGACAACAGAGACTAACATTTACATTGACAAAAAACCCTAAAAATTTC TGCAATTATCTTATTGAACAATAAAATTGCATGTTTACTTCTA	chrY	18541720	18553592
a0004c0003t0001	0/0	1394	1	0	0	1	0	0	HSFY1_chrY_18541720_18553592	HSFY1	AGCAT others(1389): Show AGCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGTAGATA AAGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGT TTCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTCCACTAGGTCTCCAT TGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAA GAACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAG TTACACAGTTTGTGTCTCTGAGCCAGATAAAGATGATGATTTTCTTTCTC TGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCAAG TCTATTTCATGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACTC TTCAAGAAAGAAATTTTGGAAACAAAGGCTCCTTACAGAATATTTCAAAC TGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTTATGGATTTAGTA AAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTCA GAAGAGAAAGAATCGTCTGTCTTAAGCAAGTTAAAGTTCTATTATAATCC AAATTTCAAGCGTGGCTATCCCCAACTTTTAGTAAGAGTGAAGAGAAGAA TTGGTGTTAAAAATGCTTCACCTATATCTACTTTATTCAACGAAGATTTC AACAAGAAGCATTTTAGAGCAGGGGCTAACATGGAGAATCATAATTCTGC CTTAGCTGCTGAAGCTAGTGAAGAAAGTTTATTTTCAGCCTCTAAAAATT TAAATATGCCTCTAACAAGGGAATCTTCTGTCAGACAGATAATTGCAAAT TCATCTGTCCCCATTAGAAGTGGTTTCCCTCCTCCTTCACCTTCAACCTC AGTTGGACCATCAGAACAAATTGCAACAGATCAACATGCTATTTTAAATC AGTTGACCACTATTCATATGCACTCTCATAGTACCTACATGCAAGCAAGG GGCCACATTGTGAATTTTATTACAACCACAACTTCTCAATACCACATCAT ATCTCCCTTACAAAATGGTTATTTTGGGCTGACAGTGGAACCATCTGCTG TTCCCACACGATATCCTCTGGTATCAGTCAATGAGGCTCCATATCGTAAC ATGCTACCAGCAGGCAACCCGTGGTTGCAAATGCCTACGATCGCTGATAG ATCAGCTGCCCCTCATTCCAGGCTAGCTCTTCAACCATCACCACTGGACA AATATCACCCTAATTACAACTGATCTGCCATTAAAAGAGGACCAGATTAT GAATGACAACAGAGACTAACATTTACATTGACAAAAAACCCTAAAAATTT CTGCAATTATCTTATTGAACAATAAAATTGCATGTTTACTTCTA	chrY	18541720	18553592
a0005c0005t0001	0/0	1393	1	0	0	0	0	1	HSFY1_chrY_18541720_18553592	HSFY1	AGCAT others(1388): Show AGCATTTGAAGCTGCAGTCCTGAAAACCATGCAGGCCGGAAGAGTAGATA AAGAAATATTTATTTGAGATGGCACATGTTTCTTCAGAAACTCAAGATGT TTCCCCCAAAGATGAATTAACTGCTTCAGAAGCCTCCACTAGGTCTCCAT TGTGTGAACACACCTTCCCTGGGGACTCAGACTTACGGTCAATGATTGAA GAACATGCTTTTCAGGTTTTGTCACAAGGATCCTTGTTAGAAAGTCCAAG TTACACAGTTTGTGTCTCTGAGCCAGATAAAGATGATGATTTTCTTTCTC TGAACTTTCCCAGGAAACTTTGGAAAATAGTGGAAAGTGACCAATTCAAG TCTATTTCATGGGATGAGAATGGAACTTGCATAGTGATTAATGAAGAACT CTTCAAGAAAGAAATTTTGGAAACAAAGGCTCCTTACAGAATATTTCAAA CTGATGCTATCAAAAGTTTTGTTCGACAGCTCAACCTTTATGGATTTAGT AAAATTCAACAGAATTTTCAAAGATCTGCCTTTCTAGCCACCTTTCTGTC AGAAGAGAAAGAATCGTCTGTCTTAAGCAAGTTAAAGTTCTATTATAATC CAAATTTCAAGCGTGGCTATCCCAACTTTTAGTAAGAGTGAAGAGAAGAA TTGGTGTTAAAATGCTTCACCTATATCTACTTTATTCAACGAAGATTTCA ACAAGAAGCATTTTAGAGCAGGGGCTAACATGGAGAATCATAATTCTGCC TTAGCTGCTGAAGCTAGTGAAGAAAGTTTATTTTCAGCCTCTAAAAATTT AAATATGCCTCTAACAAGGGAATCTTCTGTCAGACAGATAATTGCAAATT CATCTGTCCCCATTAGAAGTGGTTTCCCTCCTCCTTCACCTTCAACCTCA GTTGGACCATCAGAACAAATTGCAACAGATCAACATGCTATTTTAAATCA GTTGACCACTATTCATATGCACTCTCATAGTACCTACATGCAAGCAAGGG GCCACATTGTGAATTTTATTACAACCACAACTTCTCAATACCACATCATA TCTCCCTTACAAAATGGTTATTTTGGGCTGACAGTGGAACCATCTGCTGT TCCCACACGATATCCTCTGGTATCAGTCAATGAGGCTCCATATCGTAACA TGCTACCAGCAGGCAACCCGTGGTTGCAAATGCCTACGATCGCTGATAGA TCAGCTGCCCCTCATTCCAGGCTAGCTCTTCAACCATCACCACTGGACAA ATATCACCCTAATTACAACTGATCTGCCATTAAAAGAGGACCAGATTATG AATGACAACAGAGACTAACATTTACATTGACAAAAAACCCTAAAAATTTC TGCAATTATCTTATTGAACAATAAAATTGCATGTTTACTTCTA	chrY	18541720	18553592

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	44	8	6	19	2	9	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
a0001c0001t0001g0002	0/0	1	0	0	1	0	0	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
a0001c0001t0001g0003	0/0	1	0	1	0	0	0	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
a0002c0002t0001g0005	0/0	1	0	0	1	0	0	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
a0003c0004t0001g0004	0/0	1	0	1	0	0	0	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
a0004c0003t0001g0006	0/0	1	0	0	1	0	0	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
a0005c0005t0001g0007	0/0	1	0	0	0	0	1	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG00621	hp1	a0001	c0001	t0001	g0001	EAS	CHS	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG00673	hp1	a0002	c0002	t0001	g0005	EAS	CHS	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG01167	hp1	a0001	c0001	t0001	g0003	AMR	PUR	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG01192	hp1	a0003	c0004	t0001	g0004	AMR	PUR	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG01258	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02015	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02027	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02735	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18612	hp1	a0001	c0001	t0001	g0001	EAS	CHB	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18940	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18960	hp1	a0004	c0003	t0001	g0006	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18989	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19006	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19056	hp1	a0001	c0001	t0001	g0002	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19062	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19072	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19076	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19079	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA19086	hp1	a0001	c0001	t0001	g0001	EAS	JPT	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
NA20905	hp1	a0005	c0005	t0001	g0007	SAS	GIH	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	HSFY1_chrY_18541720_18553592	HSFY1	chrY	18541720	18553592

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrY:18546818	GT GT	G G	1	a0002 a0002	1	HG00673.hp1 HG00673.hp1	frameshift_variant	HIGH	c.34delT c.34delT	p.Ser12fs p.Ser12fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/2	102/1395	34/1206	12/401	INFO_REALIGN_3_PRIME	chrY	18546818
chrY:18546853	C C	CT CT	1	a0002 a0002	1	HG00673.hp1 HG00673.hp1	frameshift_variant	HIGH	c.67dupT c.67dupT	p.Ser23fs p.Ser23fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/2	136/1395	68/1206	23/401	INFO_REALIGN_3_PRIME	chrY	18546853
chrY:18547013	C C	CT CT	1	a0002 a0002	1	HG00673.hp1 HG00673.hp1	frameshift_variant	HIGH	c.229dupT c.229dupT	p.Ser77fs p.Ser77fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/2	298/1395	230/1206	77/401	INFO_REALIGN_3_PRIME	chrY	18547013
chrY:18547079	TG TG	T T	1	a0004 a0004	1	NA18960.hp1 NA18960.hp1	frameshift_variant	HIGH	c.295delG c.295delG	p.Asp99fs p.Asp99fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/2	363/1395	295/1206	99/401	INFO_REALIGN_3_PRIME	chrY	18547079
chrY:18547185	G G	GT GT	1	a0002 a0002	1	HG00673.hp1 HG00673.hp1	frameshift_variant	HIGH	c.402dupT c.402dupT	p.Val135fs p.Val135fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/2	471/1395	403/1206	135/401	INFO_REALIGN_3_PRIME	chrY	18547185
chrY:18547194	G G	GA GA	1	a0002 a0002	1	HG00673.hp1 HG00673.hp1	frameshift_variant	HIGH	c.408dupA c.408dupA	p.Gln137fs p.Gln137fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/2	477/1395	409/1206	137/401	INFO_REALIGN_3_PRIME	chrY	18547194
chrY:18547801	AT AT	A A	1	a0003 a0003	1	HG01192.hp1 HG01192.hp1	frameshift_variant	HIGH	c.539delT c.539delT	p.Phe180fs p.Phe180fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	2/2	607/1395	539/1206	180/401	INFO_REALIGN_3_PRIME	chrY	18547801
chrY:18547817	TC TC	T T	1	a0005 a0005	1	NA20905.hp1 NA20905.hp1	frameshift_variant	HIGH	c.556delC c.556delC	p.Gln186fs p.Gln186fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	2/2	624/1395	556/1206	186/401	INFO_REALIGN_3_PRIME	chrY	18547817
chrY:18547856	TA TA	T T	1	a0005 a0005	1	NA20905.hp1 NA20905.hp1	frameshift_variant	HIGH	c.596delA c.596delA	p.Asn199fs p.Asn199fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	2/2	664/1395	596/1206	199/401	INFO_REALIGN_3_PRIME	chrY	18547856
chrY:18548365	AC AC	A A	1	a0003 a0003	1	HG01192.hp1 HG01192.hp1	frameshift_variant	HIGH	c.1103delC c.1103delC	p.Pro368fs p.Pro368fs	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	2/2	1171/1395	1103/1206	368/401	INFO_REALIGN_3_PRIME	chrY	18548365

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:18547421	A A	G G	1	a0005c0005t0001g0007 a0005c0005t0001g0007	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.513+121A>G c.513+121A>G	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1		chrY	18547421
chrY:18547434	GT GT	G G	1	a0001c0001t0001g0002 a0001c0001t0001g0002	1	NA19056.hp1 NA19056.hp1	intron_variant	MODIFIER	c.513+138delT c.513+138delT	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547434
chrY:18547439	GA GA	G G	1	a0004c0003t0001g0006 a0004c0003t0001g0006	1	NA18960.hp1 NA18960.hp1	intron_variant	MODIFIER	c.513+142delA c.513+142delA	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547439
chrY:18547519	AT AT	A A	1	a0001c0001t0001g0003 a0001c0001t0001g0003	1	HG01167.hp1 HG01167.hp1	intron_variant	MODIFIER	c.513+221delT c.513+221delT	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547519
chrY:18547521	T T	TC TC	1	a0002c0002t0001g0005 a0002c0002t0001g0005	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.513+223dupC c.513+223dupC	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547521
chrY:18547630	TA TA	T T	1	a0003c0004t0001g0004 a0003c0004t0001g0004	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.514-144delA c.514-144delA	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547630
chrY:18547646	T T	TG TG	1	a0002c0002t0001g0005 a0002c0002t0001g0005	1	HG00673.hp1 HG00673.hp1	intron_variant	MODIFIER	c.514-132dupG c.514-132dupG	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547646
chrY:18547658	AT AT	A A	1	a0005c0005t0001g0007 a0005c0005t0001g0007	1	NA20905.hp1 NA20905.hp1	intron_variant	MODIFIER	c.514-118delT c.514-118delT	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547658
chrY:18547670	TA TA	T T	1	a0003c0004t0001g0004 a0003c0004t0001g0004	1	HG01192.hp1 HG01192.hp1	intron_variant	MODIFIER	c.514-106delA c.514-106delA	HSFY1	ENSG00000172468.14	transcript	ENST00000307393.3	protein_coding	1/1	INFO_REALIGN_3_PRIME	chrY	18547670

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HSFY1_chrY_18541720_18553592 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 5)

Coding Level Haplotype Info (Total: 5)

Transcript Level Haplotype Info (Total: 5)

Genebody Level Haplotype Info (Total: 7)

Haplotype Details by Sample (Haploid Level) (Total: 50)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 10)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 0)

Genebody Level Haplotype Variants (Intron) (Total: 9)

Annotation (Repeats)

Annotation (SNP Array)