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geneid	84648
ensemblid	ENSG00000163202.5
hgncid	16615
symbol	LCE3D
name	late cornified envelope 3D
refseq_nuc	NM_032563.2
refseq_prot	NP_115952.1
ensembl_nuc	ENST00000368787.4
ensembl_prot	ENSP00000357776.3
mane_status	MANE Select
chr	chr1
start	152579381
end	152580516
strand	-
ver	v1.2
region	chr1:152579381-152580516
region5000	chr1:152574381-152585516
regionname0	LCE3D_chr1_152579381_152580516
regionname5000	LCE3D_chr1_152574381_152585516

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	92	257	71	45	102	7	30	74	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0002	0/0	92	76	13	15	33	3	12	21	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0003	0/0	92	4	4	0	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0004	0/0	92	2	0	0	2	0	0	2	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0005	0/0	92	1	1	0	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0006	0/0	92	1	1	0	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0007	0/0	92	1	0	0	1	0	0	1	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	1/1	279	253	67	45	102	7	30	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
c0002	0/0	279	76	13	15	33	3	12	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
c0003	0/0	279	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
c0004	0/0	279	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
c0005	0/0	279	2	0	0	2	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
c0006	0/0	279	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
c0007	0/0	279	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
c0008	0/0	279	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	1/1	347	340	89	60	137	10	42	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
t0002	0/0	347	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
t0003	0/0	347	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	1/1	151	56	16	56	4	17	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0002	0/0	92	10	21	45	3	13	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0003	0/0	75	13	14	33	3	12	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0004	0/0	8	0	8	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0005	0/0	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0006	0/0	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0007	0/0	2	0	0	2	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0008	0/0	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0009	0/0	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0010	0/0	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0011	0/0	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0012	0/0	1	0	1	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
g0013	0/0	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	279	253	67	45	102	7	30	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0001c0004	0/0	279	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0002c0002	0/0	279	76	13	15	33	3	12	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0003c0003	0/0	279	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0004c0005	0/0	279	2	0	0	2	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0005c0006	0/0	279	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0006c0008	0/0	279	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0007c0007	0/0	279	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	625	251	66	45	101	7	30	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0001c0001t0002	0/0	625	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0001c0001t0003	0/0	625	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0001c0004t0001	0/0	625	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0002c0002t0001	0/0	625	76	13	15	33	3	12	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0003c0003t0001	0/0	625	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0004c0005t0001	0/0	625	2	0	0	2	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0005c0006t0001	0/0	625	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0006c0008t0001	0/0	625	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516
a0007c0007t0001	0/0	625	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	copy fasta	chr1	152574381	152585516

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	1/1	151	56	16	56	4	17	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0001c0001t0001g0002	0/0	92	10	21	45	3	13	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0001c0001t0001g0004	0/0	8	0	8	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0001c0001t0002g0008	0/0	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0001c0001t0003g0013	0/0	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0001c0004t0001g0006	0/0	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0002c0002t0001g0003	0/0	75	13	14	33	3	12	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0002c0002t0001g0012	0/0	1	0	1	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0003c0003t0001g0005	0/0	4	4	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0004c0005t0001g0007	0/0	2	0	0	2	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0005c0006t0001g0011	0/0	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0006c0008t0001g0010	0/0	1	1	0	0	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
a0007c0007t0001g0009	0/0	1	0	0	1	0	0	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0001	EUR	GBR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00099	hp2	a0002	c0002	t0001	g0003	EUR	GBR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00280	hp1	a0002	c0002	t0001	g0003	EUR	FIN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00280	hp2	a0001	c0001	t0001	g0002	EUR	FIN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00408	hp1	a0001	c0001	t0001	g0002	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00408	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00423	hp1	a0001	c0001	t0001	g0002	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00423	hp2	a0002	c0002	t0001	g0003	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00544	hp1	a0001	c0001	t0001	g0001	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00544	hp2	a0002	c0002	t0001	g0003	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00558	hp1	a0002	c0002	t0001	g0003	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00558	hp2	a0002	c0002	t0001	g0003	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00609	hp1	a0002	c0002	t0001	g0003	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00609	hp2	a0001	c0001	t0001	g0001	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00621	hp1	a0001	c0001	t0001	g0002	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00621	hp2	a0002	c0002	t0001	g0003	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00642	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00642	hp2	a0001	c0001	t0001	g0004	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00673	hp1	a0001	c0001	t0001	g0002	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00673	hp2	a0001	c0001	t0001	g0002	EAS	CHS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00733	hp1	a0001	c0001	t0001	g0001	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00733	hp2	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00735	hp1	a0002	c0002	t0001	g0012	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00735	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00741	hp1	a0001	c0001	t0001	g0004	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG00741	hp2	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01069	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01070	hp1	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01070	hp2	a0001	c0001	t0001	g0004	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01071	hp1	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01071	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01074	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01074	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01081	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01081	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01106	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01106	hp2	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01168	hp1	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01168	hp2	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01175	hp1	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01175	hp2	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01192	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01192	hp2	a0002	c0002	t0001	g0003	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01243	hp1	a0001	c0001	t0001	g0002	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01243	hp2	a0001	c0001	t0001	g0001	AMR	PUR	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01256	hp1	a0001	c0001	t0001	g0004	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01256	hp2	a0001	c0001	t0001	g0002	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01257	hp1	a0001	c0001	t0001	g0002	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01257	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01258	hp1	a0001	c0001	t0001	g0002	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01258	hp2	a0001	c0001	t0001	g0002	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01261	hp1	a0002	c0002	t0001	g0003	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01346	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01346	hp2	a0002	c0002	t0001	g0003	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01358	hp1	a0001	c0001	t0001	g0002	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01358	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01361	hp1	a0001	c0001	t0001	g0001	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01361	hp2	a0001	c0001	t0001	g0002	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01496	hp1	a0001	c0001	t0001	g0004	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01496	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01516	hp1	a0001	c0001	t0001	g0001	EUR	IBS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01516	hp2	a0001	c0001	t0001	g0002	EUR	IBS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01517	hp1	a0001	c0001	t0001	g0001	EUR	IBS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01517	hp2	a0002	c0002	t0001	g0003	EUR	IBS	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01884	hp1	a0002	c0002	t0001	g0003	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01884	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01891	hp1	a0001	c0004	t0001	g0006	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01891	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01934	hp1	a0001	c0001	t0001	g0002	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01934	hp2	a0002	c0002	t0001	g0003	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01943	hp1	a0001	c0001	t0001	g0004	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01943	hp2	a0001	c0001	t0001	g0002	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01952	hp1	a0001	c0001	t0001	g0002	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01952	hp2	a0001	c0001	t0001	g0001	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01975	hp1	a0001	c0001	t0001	g0001	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01975	hp2	a0001	c0001	t0001	g0004	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02015	hp1	a0002	c0002	t0001	g0003	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02015	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02027	hp1	a0002	c0002	t0001	g0003	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02027	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02040	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02040	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02055	hp2	a0001	c0001	t0003	g0013	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02071	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02071	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02080	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02080	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02083	hp1	a0002	c0002	t0001	g0003	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02083	hp2	a0001	c0001	t0001	g0002	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02129	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02129	hp2	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02132	hp1	a0001	c0001	t0001	g0002	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02132	hp2	a0002	c0002	t0001	g0003	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02145	hp1	a0002	c0002	t0001	g0003	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02148	hp1	a0002	c0002	t0001	g0003	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02148	hp2	a0001	c0001	t0001	g0002	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02155	hp1	a0001	c0001	t0001	g0002	EAS	CDX	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02155	hp2	a0001	c0001	t0001	g0001	EAS	CDX	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02165	hp1	a0002	c0002	t0001	g0003	EAS	CDX	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02165	hp2	a0001	c0001	t0001	g0002	EAS	CDX	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02257	hp1	a0002	c0002	t0001	g0003	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02257	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02258	hp2	a0003	c0003	t0001	g0005	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02273	hp1	a0001	c0001	t0001	g0004	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02273	hp2	a0001	c0001	t0001	g0002	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02280	hp2	a0001	c0001	t0001	g0002	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02300	hp1	a0001	c0001	t0001	g0002	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02300	hp2	a0002	c0002	t0001	g0003	AMR	PEL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02451	hp1	a0006	c0008	t0001	g0010	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02451	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02523	hp1	a0001	c0001	t0001	g0001	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02523	hp2	a0001	c0001	t0001	g0002	EAS	KHV	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02572	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02572	hp2	a0005	c0006	t0001	g0011	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02602	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02622	hp1	a0001	c0001	t0001	g0002	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02622	hp2	a0001	c0001	t0001	g0002	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02630	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02630	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02647	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02647	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02683	hp1	a0002	c0002	t0001	g0003	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02683	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02698	hp1	a0002	c0002	t0001	g0003	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02698	hp2	a0002	c0002	t0001	g0003	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02717	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02723	hp1	a0002	c0002	t0001	g0003	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02723	hp2	a0002	c0002	t0001	g0003	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02735	hp1	a0001	c0001	t0001	g0002	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02735	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02738	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02809	hp1	a0001	c0001	t0001	g0002	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02809	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02818	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02818	hp2	a0002	c0002	t0001	g0003	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02886	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02886	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02896	hp1	a0001	c0001	t0001	g0002	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02896	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02922	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02922	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02965	hp1	a0002	c0002	t0001	g0003	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02965	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02976	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02976	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03017	hp1	a0001	c0001	t0001	g0002	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03017	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03041	hp1	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03041	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03098	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03098	hp2	a0001	c0004	t0001	g0006	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03130	hp2	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03139	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03139	hp2	a0002	c0002	t0001	g0003	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03195	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03195	hp2	a0003	c0003	t0001	g0005	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03209	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03209	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03225	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03239	hp1	a0002	c0002	t0001	g0003	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03239	hp2	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03453	hp1	a0001	c0004	t0001	g0006	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03453	hp2	a0002	c0002	t0001	g0003	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03486	hp1	a0002	c0002	t0001	g0003	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03491	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03491	hp2	a0002	c0002	t0001	g0003	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03492	hp2	a0002	c0002	t0001	g0003	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03516	hp1	a0001	c0001	t0001	g0001	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03516	hp2	a0003	c0003	t0001	g0005	AFR	ESN	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03540	hp1	a0001	c0001	t0001	g0002	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03540	hp2	a0001	c0001	t0001	g0001	AFR	GWD	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03654	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03688	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03688	hp2	a0001	c0001	t0001	g0002	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03710	hp2	a0001	c0001	t0001	g0002	SAS	PJL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03831	hp1	a0002	c0002	t0001	g0003	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03831	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03834	hp2	a0001	c0001	t0001	g0002	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03927	hp1	a0002	c0002	t0001	g0003	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03927	hp2	a0002	c0002	t0001	g0003	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03942	hp1	a0001	c0001	t0001	g0002	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03942	hp2	a0001	c0001	t0001	g0001	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04115	hp2	a0001	c0001	t0001	g0001	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04184	hp1	a0001	c0001	t0001	g0002	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04184	hp2	a0002	c0002	t0001	g0003	SAS	BEB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04204	hp2	a0001	c0001	t0001	g0002	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04228	hp1	a0002	c0002	t0001	g0003	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG04228	hp2	a0001	c0001	t0001	g0001	SAS	STU	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18522	hp1	a0001	c0001	t0001	g0001	AFR	YRI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18522	hp2	a0001	c0001	t0001	g0001	AFR	YRI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18612	hp1	a0002	c0002	t0001	g0003	EAS	CHB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18612	hp2	a0001	c0001	t0001	g0002	EAS	CHB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18747	hp2	a0001	c0001	t0001	g0001	EAS	CHB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18906	hp1	a0001	c0001	t0001	g0001	AFR	YRI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18906	hp2	a0001	c0001	t0001	g0001	AFR	YRI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18939	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18939	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18941	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18941	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18945	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18945	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18947	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18947	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18948	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18948	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18950	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18950	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18952	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18952	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18953	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18953	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18954	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18954	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18956	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18956	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18957	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18957	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18959	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18959	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18960	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18960	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18962	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18962	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18963	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18963	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18964	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18964	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18967	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18968	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18968	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18971	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18971	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18972	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18972	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18973	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18973	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18982	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18982	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18983	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18983	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18986	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18986	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18990	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18994	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18994	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18998	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA18998	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19003	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19003	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19004	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19004	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19005	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19007	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19009	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19009	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19010	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19010	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19012	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19012	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19030	hp2	a0001	c0001	t0001	g0001	AFR	LWK	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19043	hp1	a0001	c0001	t0001	g0001	AFR	LWK	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19043	hp2	a0001	c0001	t0001	g0001	AFR	LWK	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19057	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19057	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19058	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19058	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19064	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19064	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19065	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19065	hp2	a0001	c0001	t0002	g0008	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19068	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19068	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19070	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19070	hp2	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19074	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19074	hp2	a0004	c0005	t0001	g0007	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19076	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19076	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19077	hp1	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19077	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19079	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19079	hp2	a0007	c0007	t0001	g0009	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19083	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19083	hp2	a0004	c0005	t0001	g0007	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19084	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19084	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19085	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19085	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19087	hp1	a0002	c0002	t0001	g0003	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19087	hp2	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19090	hp2	a0001	c0001	t0001	g0002	EAS	JPT	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19240	hp1	a0003	c0003	t0001	g0005	AFR	YRI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA19240	hp2	a0001	c0001	t0001	g0002	AFR	YRI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20129	hp1	a0001	c0001	t0001	g0002	AFR	ASW	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20129	hp2	a0001	c0001	t0001	g0002	AFR	ASW	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20752	hp1	a0001	c0001	t0001	g0002	EUR	TSI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20752	hp2	a0001	c0001	t0001	g0001	EUR	TSI	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20905	hp1	a0002	c0002	t0001	g0003	SAS	GIH	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20905	hp2	a0001	c0001	t0001	g0002	SAS	GIH	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01123	hp1	a0001	c0001	t0001	g0002	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG01123	hp2	a0001	c0001	t0001	g0001	AMR	CLM	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02109	hp2	a0001	c0004	t0001	g0006	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02486	hp1	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02486	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02559	hp1	a0002	c0002	t0001	g0003	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG02559	hp2	a0001	c0001	t0001	g0001	AFR	ACB	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG03471	hp2	a0002	c0002	t0001	g0003	AFR	MSL	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG06807	hp1	a0002	c0002	t0001	g0003	AFR	USA	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
HG06807	hp2	a0001	c0001	t0001	g0001	AFR	USA	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20300	hp1	a0001	c0001	t0001	g0002	AFR	USA	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
NA20300	hp2	a0001	c0001	t0001	g0001	AFR	USA	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
homoSapiens_chm13v2	hp1	a0001	c0001	t0001	g0001	REF	REF	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516
homoSapiens_grch38	hp1	a0001	c0001	t0001	g0001	REF	REF	LCE3D_chr1_152574381_152585516	LCE3D	chr1	152574381	152585516

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr1:152579684	C C	T T	1	a0004 a0004	2	NA19074.hp2 NA19083.hp2 NA19074.hp2 NA19083.hp2	missense_variant	MODERATE	c.253G>A c.253G>A	p.Gly85Ser p.Gly85Ser	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2	322/625	253/279	85/92	chr1	152579684
chr1:152579695	C C	A A	1	a0003 a0003	4	HG02258.hp2 HG03195.hp2 HG03516.hp2 others(1): Show HG02258.hp2 HG03195.hp2 HG03516.hp2 NA19240.hp1	missense_variant	MODERATE	c.242G>T c.242G>T	p.Gly81Val p.Gly81Val	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2	311/625	242/279	81/92	chr1	152579695
chr1:152579716	C C	A A	1	a0006 a0006	1	HG02451.hp1 HG02451.hp1	missense_variant	MODERATE	c.221G>T c.221G>T	p.Gly74Val p.Gly74Val	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2	290/625	221/279	74/92	chr1	152579716
chr1:152579744	G G	A A	1	a0005 a0005	1	HG02572.hp2 HG02572.hp2	missense_variant	MODERATE	c.193C>T c.193C>T	p.Arg65Cys p.Arg65Cys	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2	262/625	193/279	65/92	chr1	152579744
chr1:152579786	C C	T T	1	a0007 a0007	1	NA19079.hp2 NA19079.hp2	missense_variant	MODERATE	c.151G>A c.151G>A	p.Gly51Ser p.Gly51Ser	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2	220/625	151/279	51/92	chr1	152579786
chr1:152579809	C C	A A	2	a0002 a0007 a0002 a0007	77	HG00099.hp2 HG00280.hp1 HG00423.hp2 others(74): Show HG00099.hp2 HG00280.hp1 HG00423.hp2 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00621.hp2 HG00733.hp2 HG00735.hp1 HG00741.hp2 HG01070.hp1 HG01071.hp1 HG01106.hp2 HG01168.hp1 HG01175.hp1 HG01175.hp2 HG01192.hp2 HG01261.hp1 HG01346.hp2 HG01517.hp2 HG01884.hp1 HG01934.hp2 HG02015.hp1 HG02027.hp1 HG02083.hp1 HG02132.hp2 HG02145.hp1 HG02148.hp1 HG02165.hp1 HG02257.hp1 HG02300.hp2 HG02559.hp1 HG02683.hp1 HG02698.hp1 HG02698.hp2 HG02723.hp1 HG02723.hp2 HG02818.hp2 HG02965.hp1 HG03139.hp2 HG03239.hp1 HG03453.hp2 HG03471.hp2 HG03486.hp1 HG03491.hp2 HG03492.hp2 HG03831.hp1 HG03927.hp1 HG03927.hp2 HG04184.hp2 HG04228.hp1 HG06807.hp1 NA18612.hp1 NA18941.hp2 NA18945.hp2 NA18954.hp1 NA18956.hp1 NA18957.hp2 NA18960.hp2 NA18963.hp2 NA18973.hp1 NA18973.hp2 NA18983.hp1 NA18983.hp2 NA18986.hp2 NA18994.hp1 NA18994.hp2 NA18998.hp2 NA19007.hp2 NA19009.hp2 NA19068.hp1 NA19070.hp2 NA19079.hp1 NA19079.hp2 NA19087.hp1 NA20905.hp1	missense_variant	MODERATE	c.128G>T c.128G>T	p.Gly43Val p.Gly43Val	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2	197/625	128/279	43/92	chr1	152579809

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr1:152579835	G G	A A	2	a0001c0004 a0006c0008 a0001c0004 a0006c0008	5	HG01891.hp1 HG02109.hp2 HG02451.hp1 others(2): Show HG01891.hp1 HG02109.hp2 HG02451.hp1 HG03098.hp2 HG03453.hp1	synonymous_variant	LOW	c.102C>T c.102C>T	p.Ser34Ser p.Ser34Ser	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2	171/625	102/279	34/92			chr1	152579835

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr1:152579510	G G	A A	1	a0001c0001t0002 a0001c0001t0002	1	NA19065.hp2 NA19065.hp2	3_prime_UTR_variant	MODIFIER	c.148C>T c.148C>T		LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	2/2				148		chr1	152579510
chr1:152580510	G G	A A	1	a0001c0001t0003 a0001c0001t0003	1	HG02055.hp2 HG02055.hp2	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-63C>T c.-63C>T		LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	1/2						chr1	152580510

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr1:152579985	C C	A A	2	a0001c0001t0001g0002 a0005c0006t0001g0011 a0001c0001t0001g0002 a0005c0006t0001g0011	93	HG00280.hp2 HG00408.hp1 HG00423.hp1 others(90): Show HG00280.hp2 HG00408.hp1 HG00423.hp1 HG00621.hp1 HG00642.hp1 HG00673.hp1 HG00673.hp2 HG01069.hp1 HG01074.hp1 HG01081.hp1 HG01106.hp1 HG01123.hp1 HG01168.hp2 HG01192.hp1 HG01243.hp1 HG01256.hp2 HG01257.hp1 HG01258.hp1 HG01258.hp2 HG01358.hp1 HG01361.hp2 HG01516.hp2 HG01934.hp1 HG01943.hp2 HG01952.hp1 HG02040.hp1 HG02080.hp1 HG02083.hp2 HG02129.hp1 HG02132.hp1 HG02148.hp2 HG02155.hp1 HG02165.hp2 HG02273.hp2 HG02280.hp2 HG02300.hp1 HG02523.hp2 HG02572.hp2 HG02602.hp2 HG02622.hp1 HG02622.hp2 HG02735.hp1 HG02738.hp2 HG02809.hp1 HG02896.hp1 HG03017.hp1 HG03017.hp2 HG03540.hp1 HG03654.hp2 HG03688.hp2 HG03710.hp2 HG03834.hp2 HG03942.hp1 HG04184.hp1 HG04204.hp2 NA18612.hp2 NA18939.hp2 NA18947.hp1 NA18948.hp1 NA18950.hp1 NA18952.hp1 NA18952.hp2 NA18954.hp2 NA18957.hp1 NA18959.hp1 NA18960.hp1 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18967.hp2 NA18971.hp2 NA18982.hp2 NA18986.hp1 NA18990.hp2 NA18998.hp1 NA19004.hp1 NA19005.hp2 NA19010.hp1 NA19012.hp2 NA19064.hp1 NA19068.hp2 NA19074.hp1 NA19076.hp1 NA19077.hp1 NA19085.hp2 NA19090.hp2 NA19240.hp2 NA20129.hp1 NA20129.hp2 NA20300.hp1 NA20752.hp1 NA20905.hp2	intron_variant	MODIFIER	c.-21-28G>T c.-21-28G>T	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	1/1	chr1	152579985
chr1:152580086	T T	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	8	HG00642.hp2 HG00741.hp1 HG01070.hp2 others(5): Show HG00642.hp2 HG00741.hp1 HG01070.hp2 HG01256.hp1 HG01496.hp1 HG01943.hp1 HG01975.hp2 HG02273.hp1	intron_variant	MODIFIER	c.-21-129A>T c.-21-129A>T	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	1/1	chr1	152580086
chr1:152580290	G G	C C	1	a0002c0002t0001g0012 a0002c0002t0001g0012	1	HG00735.hp1 HG00735.hp1	intron_variant	MODIFIER	c.-22+179C>G c.-22+179C>G	LCE3D	ENSG00000163202.5	transcript	ENST00000368787.4	protein_coding	1/1	chr1	152580290

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 7)

CCoding Level Haplotype Info (Total: 8)

TTranscript Level Haplotype Info (Total: 3)

GGenebody Level Haplotype Info (Total: 13)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 8)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 10)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 13)

Haplotype Details by Sample (Haploid Level) (Total: 342)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 6)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 2)

GGenebody Level Haplotype Variants (Intron) (Total: 3)

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Annotation (Repeats)

Annotation (SNP Array)