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geneid	378951
ensemblid	ENSG00000226941.9
hgncid	23917
symbol	RBMY1J
name	RNA binding motif protein Y-linked family 1 member J
refseq_nuc	NM_001006117.4
refseq_prot	NP_001006117.2
ensembl_nuc	ENST00000250831.6
ensembl_prot	ENSP00000250831.5
mane_status	MANE Select
chr	chrY
start	22403410
end	22417881
strand	+
ver	v1.2
region	chrY:22403410-22417881
region5000	chrY:22398410-22422881
regionname0	RBMY1J_chrY_22403410_22417881
regionname5000	RBMY1J_chrY_22398410_22422881

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	496	1	0	0	1	0	0	1	RBMY1J_chrY_22398410_22422881	RBMY1J	copy fasta	chrY	22398410	22422881

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1491	1	0	0	1	0	0	RBMY1J_chrY_22398410_22422881	RBMY1J	copy fasta	chrY	22398410	22422881

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	457	1	0	0	1	0	0	RBMY1J_chrY_22398410_22422881	RBMY1J	copy fasta	chrY	22398410	22422881

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	1	0	0	1	0	0	RBMY1J_chrY_22398410_22422881	RBMY1J	chrY	22398410	22422881

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1491	1	0	0	1	0	0	RBMY1J_chrY_22398410_22422881	RBMY1J	copy fasta	chrY	22398410	22422881

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1947	1	0	0	1	0	0	RBMY1J_chrY_22398410_22422881	RBMY1J	copy fasta	chrY	22398410	22422881

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	1	0	0	1	0	0	RBMY1J_chrY_22398410_22422881	RBMY1J	chrY	22398410	22422881

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	RBMY1J_chrY_22398410_22422881	RBMY1J	chrY	22398410	22422881

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:22403532	C C	CG CG	1	a0001c0001t0001 a0001c0001t0001	1	NA19089.hp1 NA19089.hp1	5_prime_UTR_variant	MODIFIER	c.-54dupG c.-54dupG		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	1/12				1914	INFO_REALIGN_3_PRIME	chrY	22403532

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chrY:22405571	CGT CGT	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.109+54_109+55delGT c.109+54_109+55delGT		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	2/11					INFO_REALIGN_3_PRIME	chrY	22405571
chrY:22407778	G G	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.214-1374G>C c.214-1374G>C		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	3/11						chrY	22407778
chrY:22408380	AT AT	A A	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.214-767delT c.214-767delT		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	3/11					INFO_REALIGN_3_PRIME	chrY	22408380
chrY:22409952	C C	CT CT	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.391+626dupT c.391+626dupT		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	4/11					INFO_REALIGN_3_PRIME	chrY	22409952
chrY:22410126	T T	TG TG	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.391+801dupG c.391+801dupG		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	4/11					INFO_REALIGN_3_PRIME	chrY	22410126
chrY:22410140	G G	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.391+811G>C c.391+811G>C		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	4/11						chrY	22410140
chrY:22410227	T T	TG TG	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.391+901dupG c.391+901dupG		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	4/11					INFO_REALIGN_3_PRIME	chrY	22410227
chrY:22410754	A A	AG AG	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.392-488dupG c.392-488dupG		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	4/11					INFO_REALIGN_3_PRIME	chrY	22410754
chrY:22411635	G G	A A	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.544+238G>A c.544+238G>A		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	5/11						chrY	22411635
chrY:22412540	G G	GT GT	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.545-865dupT c.545-865dupT		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	5/11					INFO_REALIGN_3_PRIME	chrY	22412540
chrY:22416246	G G	A A	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.993-362G>A c.993-362G>A		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	9/11						chrY	22416246
chrY:22416985	G G	C C	1	a0001c0001t0001g0001 a0001c0001t0001g0001	1	NA19089.hp1 NA19089.hp1	intron_variant	MODIFIER	c.1192+92G>C c.1192+92G>C		RBMY1J	ENSG00000226941.9	transcript	ENST00000250831.6	protein_coding	11/11						chrY	22416985