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geneid	100996746
ensemblid	ENSG00000275976.6
hgncid	51507
symbol	SPDYE11
name	speedy/RINGO cell cycle regulator family member E11
refseq_nuc	NM_001351349.3
refseq_prot	NP_001338278.1
ensembl_nuc	ENST00000340073.9
ensembl_prot	ENSP00000498510.1
mane_status	MANE Select
chr	chr7
start	73047862
end	73057911
strand	-
ver	v1.2
region	chr7:73047862-73057911
region5000	chr7:73042862-73062911
regionname0	SPDYE11_chr7_73047862_73057911
regionname5000	SPDYE11_chr7_73042862_73062911

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	265	8	4	2	2	0	0	2	SPDYE11_chr7_73042862_73062911	SPDYE11	copy fasta	chr7	73042862	73062911

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	798	8	4	2	2	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	copy fasta	chr7	73042862	73062911

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	2103	7	3	2	2	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	copy fasta	chr7	73042862	73062911
t0002	0/0	2103	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	copy fasta	chr7	73042862	73062911

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	2	0	0	2	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
g0002	0/0	1	0	1	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
g0003	0/0	1	0	1	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
g0004	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
g0005	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
g0006	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
g0007	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	798	8	4	2	2	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	copy fasta	chr7	73042862	73062911

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	2900	7	3	2	2	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	copy fasta	chr7	73042862	73062911
a0001c0001t0002	0/0	2900	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	copy fasta	chr7	73042862	73062911

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	2	0	0	2	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
a0001c0001t0001g0002	0/0	1	0	1	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
a0001c0001t0001g0003	0/0	1	0	1	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
a0001c0001t0001g0004	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
a0001c0001t0001g0005	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
a0001c0001t0001g0006	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
a0001c0001t0002g0007	0/0	1	1	0	0	0	0	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG01943	hp1	a0001	c0001	t0001	g0003	AMR	PEL	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
HG01943	hp2	a0001	c0001	t0001	g0002	AMR	PEL	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
NA18980	hp1	a0001	c0001	t0001	g0001	EAS	JPT	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
NA18980	hp2	a0001	c0001	t0001	g0001	EAS	JPT	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
NA19043	hp1	a0001	c0001	t0001	g0004	AFR	LWK	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
NA19043	hp2	a0001	c0001	t0001	g0005	AFR	LWK	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
HG02559	hp1	a0001	c0001	t0002	g0007	AFR	ACB	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911
HG02559	hp2	a0001	c0001	t0001	g0006	AFR	ACB	SPDYE11_chr7_73042862_73062911	SPDYE11	chr7	73042862	73062911

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr7:73057849	C C	A A	1	a0001c0001t0002 a0001c0001t0002	1	HG02559.hp1 HG02559.hp1	5_prime_UTR_variant	MODIFIER	c.-513G>T c.-513G>T		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	1/8				1738		chr7	73057849

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr7:73049981	A A	C C	4	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0007	4	HG02559.hp1 HG02559.hp2 NA19043.hp1 others(1): Show HG02559.hp1 HG02559.hp2 NA19043.hp1 NA19043.hp2	intron_variant	MODIFIER	c.45+216T>G c.45+216T>G		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	7/7						chr7	73049981
chr7:73049983	C C	T T	3	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003	4	HG01943.hp1 HG01943.hp2 NA18980.hp1 others(1): Show HG01943.hp1 HG01943.hp2 NA18980.hp1 NA18980.hp2	intron_variant	MODIFIER	c.45+214G>A c.45+214G>A		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	7/7						chr7	73049983
chr7:73050844	G G	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.495-177C>T c.495-177C>T		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	5/7						chr7	73050844
chr7:73052343	T T	C C	6	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0007	7	HG01943.hp1 HG02559.hp1 HG02559.hp2 others(4): Show HG01943.hp1 HG02559.hp1 HG02559.hp2 NA18980.hp1 NA18980.hp2 NA19043.hp1 NA19043.hp2	intron_variant	MODIFIER	c.494+26A>G c.494+26A>G		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	5/7						chr7	73052343
chr7:73053307	G G	A A	1	a0001c0001t0001g0006 a0001c0001t0001g0006	1	HG02559.hp2 HG02559.hp2	intron_variant	MODIFIER	c.408+375C>T c.408+375C>T		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	4/7						chr7	73053307
chr7:73053378	A A	C C	2	a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0002 a0001c0001t0001g0003	2	HG01943.hp1 HG01943.hp2 HG01943.hp1 HG01943.hp2	intron_variant	MODIFIER	c.408+304T>G c.408+304T>G		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	4/7						chr7	73053378
chr7:73054103	C C	T T	1	a0001c0001t0002g0007 a0001c0001t0002g0007	1	HG02559.hp1 HG02559.hp1	intron_variant	MODIFIER	c.350-363G>A c.350-363G>A		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	3/7						chr7	73054103
chr7:73054132	C C	A A	2	a0001c0001t0001g0006 a0001c0001t0002g0007 a0001c0001t0001g0006 a0001c0001t0002g0007	2	HG02559.hp1 HG02559.hp2 HG02559.hp1 HG02559.hp2	intron_variant	MODIFIER	c.350-392G>T c.350-392G>T		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	3/7						chr7	73054132
chr7:73055470	T T	C C	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA19043.hp2 NA19043.hp2	intron_variant	MODIFIER	c.131-478A>G c.131-478A>G		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	2/7						chr7	73055470
chr7:73055619	CT CT	C C	4	a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0002g0007	4	HG02559.hp1 HG02559.hp2 NA19043.hp1 others(1): Show HG02559.hp1 HG02559.hp2 NA19043.hp1 NA19043.hp2	intron_variant	MODIFIER	c.130+362delA c.130+362delA		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	2/7						chr7	73055619
chr7:73055896	G G	A A	2	a0001c0001t0001g0006 a0001c0001t0002g0007 a0001c0001t0001g0006 a0001c0001t0002g0007	2	HG02559.hp1 HG02559.hp2 HG02559.hp1 HG02559.hp2	intron_variant	MODIFIER	c.130+86C>T c.130+86C>T		SPDYE11	ENSG00000275976.6	transcript	ENST00000340073.9	protein_coding	2/7						chr7	73055896