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geneid	105180390
ensemblid	ENSG00000286038.2
hgncid	51509
symbol	SPDYE13
name	speedy/RINGO cell cycle regulator family member E13
refseq_nuc	NM_001382563.2
refseq_prot	NP_001369492.1
ensembl_nuc	ENST00000652175.2
ensembl_prot	ENSP00000498801.1
mane_status	MANE Select
chr	chr7
start	75280790
end	75289501
strand	+
ver	v1.2
region	chr7:75280790-75289501
region5000	chr7:75275790-75294501
regionname0	SPDYE13_chr7_75280790_75289501
regionname5000	SPDYE13_chr7_75275790_75294501

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	SAS	regionname	genename	aa	chr	start	end
a0001	0/0	265	18	16	2	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0002	0/0	265	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0003	0/0	265	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	798	18	16	2	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
c0002	0/0	798	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
c0003	0/0	798	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	1981	15	14	1	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
t0002	0/0	1981	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
t0003	0/0	1981	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
t0004	0/0	1981	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
t0005	0/0	1981	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
t0006	0/0	1981	1	0	1	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	SAS	regionname	genename	chr	start	end
g0001	0/0	3	3	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0002	0/0	3	3	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0003	0/0	2	1	1	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0004	0/0	2	2	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0005	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0006	0/0	1	0	1	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0007	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0008	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0009	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0010	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0011	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0012	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0013	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
g0014	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	798	18	16	2	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0002c0003	0/0	798	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0003c0002	0/0	798	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501

acthapid	grch38 chm13v2	tlen	total	AFR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	2778	15	14	1	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0001c0001t0002	0/0	2778	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0001c0001t0004	0/0	2778	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0001c0001t0006	0/0	2778	1	0	1	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0002c0003t0005	0/0	2778	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501
a0003c0002t0003	0/0	2778	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	copy fasta	chr7	75275790	75294501

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	2	2	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0002	0/0	3	3	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0003	0/0	2	1	1	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0004	0/0	2	2	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0007	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0008	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0009	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0010	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0011	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0001g0012	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0002g0001	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0004g0005	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0001c0001t0006g0006	0/0	1	0	1	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0002c0003t0005g0013	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
a0003c0002t0003g0014	0/0	1	1	0	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG02145	hp1	a0001	c0001	t0001	g0009	AFR	ACB	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG02145	hp2	a0001	c0001	t0001	g0001	AFR	ACB	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG02572	hp1	a0001	c0001	t0004	g0005	AFR	GWD	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG02572	hp2	a0001	c0001	t0001	g0011	AFR	GWD	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG02738	hp1	a0001	c0001	t0006	g0006	SAS	PJL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG02738	hp2	a0001	c0001	t0001	g0003	SAS	PJL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG02886	hp1	a0001	c0001	t0001	g0008	AFR	GWD	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG02886	hp2	a0001	c0001	t0001	g0002	AFR	GWD	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03041	hp1	a0001	c0001	t0001	g0002	AFR	GWD	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03041	hp2	a0001	c0001	t0001	g0001	AFR	GWD	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03209	hp1	a0001	c0001	t0001	g0002	AFR	MSL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03209	hp2	a0001	c0001	t0001	g0007	AFR	MSL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03453	hp1	a0001	c0001	t0001	g0004	AFR	MSL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03453	hp2	a0001	c0001	t0001	g0004	AFR	MSL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03486	hp1	a0001	c0001	t0001	g0010	AFR	MSL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03486	hp2	a0003	c0002	t0003	g0014	AFR	MSL	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03516	hp1	a0002	c0003	t0005	g0013	AFR	ESN	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
HG03516	hp2	a0001	c0001	t0002	g0001	AFR	ESN	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
NA19030	hp1	a0001	c0001	t0001	g0012	AFR	LWK	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501
NA19030	hp2	a0001	c0001	t0001	g0003	AFR	LWK	SPDYE13_chr7_75275790_75294501	SPDYE13	chr7	75275790	75294501

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr7:75281361	T T	C C	1	a0003 a0003	1	HG03486.hp2 HG03486.hp2	missense_variant	MODERATE	c.119T>C c.119T>C	p.Leu40Ser p.Leu40Ser	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/7	572/2778	119/798	40/265			chr7	75281361
chr7:75282494	C C	T T	1	a0002 a0002	1	HG03516.hp1 HG03516.hp1	missense_variant	MODERATE	c.257C>T c.257C>T	p.Ala86Val p.Ala86Val	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/7	710/2778	257/798	86/265			chr7	75282494

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr7:75286726	C C	T T	1	a0002c0003 a0002c0003	1	HG03516.hp1 HG03516.hp1	synonymous_variant	LOW	c.525C>T c.525C>T	p.Asp175Asp p.Asp175Asp	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	5/7	978/2778	525/798	175/265			chr7	75286726

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	transcript_biotype	rank	distance	chr	pos
chr7:75281038	G G	A A	1	a0001c0001t0002 a0001c0001t0002	1	HG03516.hp2 HG03516.hp2	5_prime_UTR_variant	MODIFIER	c.-205G>A c.-205G>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/7	205	chr7	75281038
chr7:75281089	C C	T T	1	a0001c0001t0006 a0001c0001t0006	1	HG02738.hp1 HG02738.hp1	5_prime_UTR_premature_start_codon_gain_variant	LOW	c.-154C>T c.-154C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/7		chr7	75281089
chr7:75281094	T T	C C	6	a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 others(3): Show a0001c0001t0001 a0001c0001t0002 a0001c0001t0004 a0001c0001t0006 a0002c0003t0005 a0003c0002t0003	20	HG02145.hp1 HG02145.hp2 HG02572.hp1 others(17): Show HG02145.hp1 HG02145.hp2 HG02572.hp1 HG02572.hp2 HG02738.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03209.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 NA19030.hp1 NA19030.hp2	5_prime_UTR_variant	MODIFIER	c.-149T>C c.-149T>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/7	149	chr7	75281094
chr7:75288264	C C	T T	1	a0002c0003t0005 a0002c0003t0005	1	HG03516.hp1 HG03516.hp1	3_prime_UTR_variant	MODIFIER	c.290C>T c.290C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	7/7	1143	chr7	75288264
chr7:75288666	T T	A A	1	a0003c0002t0003 a0003c0002t0003	1	HG03486.hp2 HG03486.hp2	3_prime_UTR_variant	MODIFIER	c.692T>A c.692T>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	7/7	1545	chr7	75288666
chr7:75288693	C C	T T	1	a0001c0001t0004 a0001c0001t0004	1	HG02572.hp1 HG02572.hp1	3_prime_UTR_variant	MODIFIER	c.719C>T c.719C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	7/7	1572	chr7	75288693

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chr7:75281388	A A	G G	1	a0003c0002t0003g0014 a0003c0002t0003g0014	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.130+16A>G c.130+16A>G	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/6		chr7	75281388
chr7:75281709	C C	A A	6	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 others(3): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0007 a0001c0001t0002g0001 a0001c0001t0004g0005 a0001c0001t0006g0006	8	HG02145.hp2 HG02572.hp1 HG02738.hp1 others(5): Show HG02145.hp2 HG02572.hp1 HG02738.hp1 HG02738.hp2 HG03041.hp2 HG03209.hp2 HG03516.hp2 NA19030.hp2	intron_variant	MODIFIER	c.130+337C>A c.130+337C>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/6		chr7	75281709
chr7:75281724	G G	A A	1	a0003c0002t0003g0014 a0003c0002t0003g0014	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.130+352G>A c.130+352G>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/6		chr7	75281724
chr7:75281727	G G	A A	1	a0003c0002t0003g0014 a0003c0002t0003g0014	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.130+355G>A c.130+355G>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/6		chr7	75281727
chr7:75281727	GA GA	G G	9	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(6): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0012 a0001c0001t0002g0001 a0001c0001t0004g0005 a0001c0001t0006g0006 a0002c0003t0005g0013	12	HG02145.hp2 HG02572.hp1 HG02738.hp1 others(9): Show HG02145.hp2 HG02572.hp1 HG02738.hp1 HG02738.hp2 HG03041.hp2 HG03209.hp2 HG03453.hp1 HG03453.hp2 HG03516.hp1 HG03516.hp2 NA19030.hp1 NA19030.hp2	intron_variant	MODIFIER	c.130+368delA c.130+368delA	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/6	INFO_REALIGN_3_PRIME	chr7	75281727
chr7:75282101	CA CA	C C	9	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 others(6): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0002g0001 a0001c0001t0004g0005 a0001c0001t0006g0006 a0002c0003t0005g0013 a0003c0002t0003g0014	12	HG02145.hp2 HG02572.hp1 HG02738.hp1 others(9): Show HG02145.hp2 HG02572.hp1 HG02738.hp1 HG02738.hp2 HG03041.hp2 HG03209.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03516.hp1 HG03516.hp2 NA19030.hp2	intron_variant	MODIFIER	c.131-248delA c.131-248delA	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	1/6	INFO_REALIGN_3_PRIME	chr7	75282101
chr7:75282841	C C	T T	1	a0002c0003t0005g0013 a0002c0003t0005g0013	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.349+255C>T c.349+255C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/6		chr7	75282841
chr7:75282990	G G	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.349+404G>A c.349+404G>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/6		chr7	75282990
chr7:75283242	T T	C C	1	a0003c0002t0003g0014 a0003c0002t0003g0014	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.350-377T>C c.350-377T>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/6		chr7	75283242
chr7:75283262	A A	C C	1	a0003c0002t0003g0014 a0003c0002t0003g0014	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.350-357A>C c.350-357A>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/6		chr7	75283262
chr7:75283301	T T	G G	1	a0001c0001t0001g0009 a0001c0001t0001g0009	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.350-318T>G c.350-318T>G	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/6		chr7	75283301
chr7:75283455	C C	T T	1	a0002c0003t0005g0013 a0002c0003t0005g0013	1	HG03516.hp1 HG03516.hp1	intron_variant	MODIFIER	c.350-164C>T c.350-164C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/6		chr7	75283455
chr7:75283491	T T	C C	5	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0002g0001 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0002g0001 a0001c0001t0004g0005 a0001c0001t0006g0006	7	HG02145.hp2 HG02572.hp1 HG02738.hp1 others(4): Show HG02145.hp2 HG02572.hp1 HG02738.hp1 HG02738.hp2 HG03041.hp2 HG03516.hp2 NA19030.hp2	intron_variant	MODIFIER	c.350-128T>C c.350-128T>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	2/6		chr7	75283491
chr7:75283791	GT GT	G G	2	a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0004 a0001c0001t0001g0008	3	HG02886.hp1 HG03453.hp1 HG03453.hp2 HG02886.hp1 HG03453.hp1 HG03453.hp2	intron_variant	MODIFIER	c.408+123delT c.408+123delT	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	3/6	INFO_REALIGN_3_PRIME	chr7	75283791
chr7:75283813	G G	GT GT	2	a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0003 a0001c0001t0001g0004	4	HG02738.hp2 HG03453.hp1 HG03453.hp2 others(1): Show HG02738.hp2 HG03453.hp1 HG03453.hp2 NA19030.hp2	intron_variant	MODIFIER	c.408+145dupT c.408+145dupT	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	3/6	INFO_REALIGN_3_PRIME	chr7	75283813
chr7:75283962	C C	T T	2	a0001c0001t0004g0005 a0001c0001t0006g0006 a0001c0001t0004g0005 a0001c0001t0006g0006	2	HG02572.hp1 HG02738.hp1 HG02572.hp1 HG02738.hp1	intron_variant	MODIFIER	c.408+285C>T c.408+285C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	3/6		chr7	75283962
chr7:75284158	A A	G G	11	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(8): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0012 a0001c0001t0002g0001 a0001c0001t0004g0005 a0001c0001t0006g0006 a0003c0002t0003g0014	16	HG02145.hp1 HG02145.hp2 HG02572.hp1 others(13): Show HG02145.hp1 HG02145.hp2 HG02572.hp1 HG02738.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03453.hp1 HG03453.hp2 HG03486.hp2 HG03516.hp2 NA19030.hp1 NA19030.hp2	intron_variant	MODIFIER	c.408+481A>G c.408+481A>G	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	3/6		chr7	75284158
chr7:75284703	A A	T T	5	a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0002g0001 others(2): Show a0001c0001t0001g0001 a0001c0001t0001g0003 a0001c0001t0002g0001 a0001c0001t0004g0005 a0001c0001t0006g0006	7	HG02145.hp2 HG02572.hp1 HG02738.hp1 others(4): Show HG02145.hp2 HG02572.hp1 HG02738.hp1 HG02738.hp2 HG03041.hp2 HG03516.hp2 NA19030.hp2	intron_variant	MODIFIER	c.409-202A>T c.409-202A>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	3/6		chr7	75284703
chr7:75284871	C C	A A	1	a0003c0002t0003g0014 a0003c0002t0003g0014	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.409-34C>A c.409-34C>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	3/6		chr7	75284871
chr7:75285129	C C	CA CA	2	a0001c0001t0001g0003 a0001c0001t0004g0005 a0001c0001t0001g0003 a0001c0001t0004g0005	3	HG02572.hp1 HG02738.hp2 NA19030.hp2 HG02572.hp1 HG02738.hp2 NA19030.hp2	intron_variant	MODIFIER	c.494+158dupA c.494+158dupA	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6	INFO_REALIGN_3_PRIME	chr7	75285129
chr7:75285129	CA CA	C C	5	a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0008 others(2): Show a0001c0001t0001g0002 a0001c0001t0001g0004 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0012	8	HG02145.hp1 HG02886.hp1 HG02886.hp2 others(5): Show HG02145.hp1 HG02886.hp1 HG02886.hp2 HG03041.hp1 HG03209.hp1 HG03453.hp1 HG03453.hp2 NA19030.hp1	intron_variant	MODIFIER	c.494+158delA c.494+158delA	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6	INFO_REALIGN_3_PRIME	chr7	75285129
chr7:75285474	C C	T T	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.494+484C>T c.494+484C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6		chr7	75285474
chr7:75285720	G G	A A	1	a0001c0001t0006g0006 a0001c0001t0006g0006	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.494+730G>A c.494+730G>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6		chr7	75285720
chr7:75285770	T T	C C	1	a0001c0001t0006g0006 a0001c0001t0006g0006	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.494+780T>C c.494+780T>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6		chr7	75285770
chr7:75285830	T T	C C	1	a0001c0001t0001g0012 a0001c0001t0001g0012	1	NA19030.hp1 NA19030.hp1	intron_variant	MODIFIER	c.494+840T>C c.494+840T>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6		chr7	75285830
chr7:75286034	G G	GTTATTTA others(9): Show GTTATTTATTTATTTAT	1	a0001c0001t0006g0006 a0001c0001t0006g0006	1	HG02738.hp1 HG02738.hp1	intron_variant	MODIFIER	c.495-653_495-638dup others(16): Show c.495-653_495-638dupTTATTTATTTATTTAT	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6	INFO_REALIGN_3_PRIME	chr7	75286034
chr7:75286162	C C	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.495-534C>A c.495-534C>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	4/6		chr7	75286162
chr7:75286972	A A	G G	15	a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 others(12): Show a0001c0001t0001g0001 a0001c0001t0001g0002 a0001c0001t0001g0003 a0001c0001t0001g0004 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0010 a0001c0001t0001g0011 a0001c0001t0001g0012 a0001c0001t0002g0001 a0001c0001t0004g0005 a0001c0001t0006g0006 a0002c0003t0005g0013 a0003c0002t0003g0014	20	HG02145.hp1 HG02145.hp2 HG02572.hp1 others(17): Show HG02145.hp1 HG02145.hp2 HG02572.hp1 HG02572.hp2 HG02738.hp1 HG02738.hp2 HG02886.hp1 HG02886.hp2 HG03041.hp1 HG03041.hp2 HG03209.hp1 HG03209.hp2 HG03453.hp1 HG03453.hp2 HG03486.hp1 HG03486.hp2 HG03516.hp1 HG03516.hp2 NA19030.hp1 NA19030.hp2	intron_variant	MODIFIER	c.738+33A>G c.738+33A>G	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	5/6		chr7	75286972
chr7:75287362	G G	A A	2	a0001c0001t0001g0002 a0001c0001t0004g0005 a0001c0001t0001g0002 a0001c0001t0004g0005	4	HG02572.hp1 HG02886.hp2 HG03041.hp1 others(1): Show HG02572.hp1 HG02886.hp2 HG03041.hp1 HG03209.hp1	intron_variant	MODIFIER	c.45+196G>A c.45+196G>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	6/6		chr7	75287362
chr7:75287425	C C	T T	1	a0001c0001t0001g0009 a0001c0001t0001g0009	1	HG02145.hp1 HG02145.hp1	intron_variant	MODIFIER	c.45+259C>T c.45+259C>T	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	6/6		chr7	75287425
chr7:75287898	G G	A A	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.46-122G>A c.46-122G>A	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	6/6		chr7	75287898
chr7:75287899	G G	C C	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG02886.hp1 HG02886.hp1	intron_variant	MODIFIER	c.46-121G>C c.46-121G>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	6/6		chr7	75287899
chr7:75287988	T T	C C	1	a0001c0001t0001g0010 a0001c0001t0001g0010	1	HG03486.hp1 HG03486.hp1	intron_variant	MODIFIER	c.46-32T>C c.46-32T>C	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	6/6		chr7	75287988
chr7:75287990	C C	G G	1	a0003c0002t0003g0014 a0003c0002t0003g0014	1	HG03486.hp2 HG03486.hp2	intron_variant	MODIFIER	c.46-30C>G c.46-30C>G	SPDYE13	ENSG00000286038.2	transcript	ENST00000652175.2	protein_coding	6/6		chr7	75287990

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🧬 JoGo Online Haplotype Explorer SPDYE13_chr7_75275790_75294501

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🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 3)

CCoding Level Haplotype Info (Total: 3)

TTranscript Level Haplotype Info (Total: 6)

GGenebody Level Haplotype Info (Total: 14)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 3)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 6)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 15)

Haplotype Details by Sample (Haploid Level) (Total: 20)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 2)

CCoding Level Variants (Synonymous Mutations) (Total: 1)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 6)

GGenebody Level Haplotype Variants (Intron) (Total: 34)

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Annotation (Repeats)

Annotation (SNP Array)