JoGo: Joint Open Genome and Omics Platform

Search by Genic region

geneid	729355
ensemblid	ENSG00000261509.7
hgncid	37202
symbol	TP53TG3B
name	TP53 target 3B
refseq_nuc	NM_001099687.4
refseq_prot	NP_001093157.1
ensembl_nuc	ENST00000341305.7
ensembl_prot	ENSP00000339405.5
mane_status	MANE Select
chr	chr16
start	33360841
end	33363478
strand	+
ver	v1.2
region	chr16:33360841-33363478
region5000	chr16:33355841-33368478
regionname0	TP53TG3B_chr16_33360841_33363478
regionname5000	TP53TG3B_chr16_33355841_33368478

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	124	46	10	10	16	4	6	14	TP53TG3B_chr16_33355841_33368478	TP53TG3B	copy fasta	chr16	33355841	33368478

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	375	46	10	10	16	4	6	TP53TG3B_chr16_33355841_33368478	TP53TG3B	copy fasta	chr16	33355841	33368478

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	1093	45	9	10	16	4	6	TP53TG3B_chr16_33355841_33368478	TP53TG3B	copy fasta	chr16	33355841	33368478
t0002	0/0	1093	1	1	0	0	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	copy fasta	chr16	33355841	33368478

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	41	9	10	12	4	6	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
g0002	0/0	2	0	0	2	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
g0003	0/0	1	0	0	1	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
g0004	0/0	1	1	0	0	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
g0005	0/0	1	0	0	1	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	375	46	10	10	16	4	6	TP53TG3B_chr16_33355841_33368478	TP53TG3B	copy fasta	chr16	33355841	33368478

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1467	45	9	10	16	4	6	TP53TG3B_chr16_33355841_33368478	TP53TG3B	copy fasta	chr16	33355841	33368478
a0001c0001t0002	0/0	1467	1	1	0	0	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	copy fasta	chr16	33355841	33368478

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	40	8	10	12	4	6	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
a0001c0001t0001g0002	0/0	2	0	0	2	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
a0001c0001t0001g0003	0/0	1	0	0	1	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
a0001c0001t0001g0004	0/0	1	1	0	0	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
a0001c0001t0001g0005	0/0	1	0	0	1	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
a0001c0001t0002g0001	0/0	1	1	0	0	0	0	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG00140	hp2	a0001	c0001	t0001	g0001	EUR	GBR	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG00642	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01069	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01069	hp2	a0001	c0001	t0001	g0001	AMR	PUR	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01261	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01515	hp2	a0001	c0001	t0001	g0001	EUR	IBS	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01952	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01993	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG01993	hp2	a0001	c0001	t0001	g0001	AMR	PEL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02135	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02135	hp2	a0001	c0001	t0001	g0001	EAS	KHV	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02280	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02280	hp2	a0001	c0001	t0001	g0001	AFR	ACB	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02615	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02615	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02698	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02895	hp2	a0001	c0001	t0001	g0001	AFR	GWD	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG03669	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG03669	hp2	a0001	c0001	t0001	g0001	SAS	PJL	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG03834	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG03834	hp2	a0001	c0001	t0001	g0001	SAS	BEB	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18943	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18943	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18951	hp1	a0001	c0001	t0001	g0003	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18951	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18967	hp2	a0001	c0001	t0001	g0005	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18968	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18968	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18992	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA18992	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA19030	hp1	a0001	c0001	t0001	g0001	AFR	LWK	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA19030	hp2	a0001	c0001	t0001	g0004	AFR	LWK	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA19056	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA19090	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
NA19090	hp2	a0001	c0001	t0001	g0002	EAS	JPT	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02109	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478
HG02109	hp2	a0001	c0001	t0002	g0001	AFR	ACB	TP53TG3B_chr16_33355841_33368478	TP53TG3B	chr16	33355841	33368478

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr16:33363211	T T	C C	1	a0001c0001t0002 a0001c0001t0002	1	HG02109.hp2 HG02109.hp2	3_prime_UTR_variant	MODIFIER	c.757T>C c.757T>C		TP53TG3B	ENSG00000261509.7	transcript	ENST00000341305.7	protein_coding	2/2				757		chr16	33363211

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chr16:33361662	G G	C C	1	a0001c0001t0001g0003 a0001c0001t0001g0003	1	NA18951.hp1 NA18951.hp1	intron_variant	MODIFIER	c.362+392G>C c.362+392G>C	TP53TG3B	ENSG00000261509.7	transcript	ENST00000341305.7	protein_coding	1/1	chr16	33361662
chr16:33361771	C C	T T	1	a0001c0001t0001g0002 a0001c0001t0001g0002	2	NA18968.hp2 NA19090.hp2 NA18968.hp2 NA19090.hp2	intron_variant	MODIFIER	c.362+501C>T c.362+501C>T	TP53TG3B	ENSG00000261509.7	transcript	ENST00000341305.7	protein_coding	1/1	chr16	33361771
chr16:33362246	C C	T T	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA18967.hp2 NA18967.hp2	intron_variant	MODIFIER	c.363-196C>T c.363-196C>T	TP53TG3B	ENSG00000261509.7	transcript	ENST00000341305.7	protein_coding	1/1	chr16	33362246
chr16:33362349	A A	G G	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.363-93A>G c.363-93A>G	TP53TG3B	ENSG00000261509.7	transcript	ENST00000341305.7	protein_coding	1/1	chr16	33362349

Search by Genic region

Search

🧬 JoGo Online Haplotype Explorer TP53TG3B_chr16_33355841_33368478

JoGo Local Haplotype Explorer (on iGV) TP53TG3B_chr16_33355841_33368478

Translation Multiple Alignment View

ACTG-Haplotype Mutation Positions 3D Viewer

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 1)

CCoding Level Haplotype Info (Total: 1)

TTranscript Level Haplotype Info (Total: 2)

GGenebody Level Haplotype Info (Total: 5)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 1)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 2)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 6)

Haplotype Details by Sample (Haploid Level) (Total: 46)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 0)

CCoding Level Variants (Synonymous Mutations) (Total: 0)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 1)

GGenebody Level Haplotype Variants (Intron) (Total: 4)

External Link

Annotation (Repeats)

Annotation (SNP Array)