Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	653550
ensemblid	ENSG00000205457.12
hgncid	42962
symbol	TP53TG3C
name	TP53 target 3C
refseq_nuc	NM_001205259.3
refseq_prot	NP_001192188.1
ensembl_nuc	ENST00000561509.3
ensembl_prot	ENSP00000455132.1
mane_status	MANE Select
chr	chr16
start	33194226
end	33196858
strand	+
ver	v1.2
region	chr16:33194226-33196858
region5000	chr16:33189226-33201858
regionname0	TP53TG3C_chr16_33194226_33196858
regionname5000	TP53TG3C_chr16_33189226_33201858

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	124	12	6	4	0	2	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	MRASP others(119): Show MRASPCISQPAASWHPRPSALRPTAGSGPDTRTPGTVEDGSAPCPAFRSP AVSPCGEEPCCFQISPAEETLELGRLVSPGNCDTLSPRAAGFYACHVRSL IPCRSTKGRWPLTASAAGLSSFSG	chr16	33189226	33201858

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0001	0/0		372	12	6	4	0	2	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C		ATGCG others(367): Show ATGCGCGCCTCACCCTGCATCTCCCAGCCCGCAGCCAGCTGGCATCCTAG ACCCTCTGCCCTGCGACCAACAGCCGGGAGCGGACCAGACACCAGAACTC CCGGAACGGTTGAAGACGGTTCCGCTCCCTGTCCCGCCTTTCGCAGCCCA GCAGTTTCGCCCTGCGGAGAGGAGCCTTGCTGTTTCCAAATCTCTCCTGC TGAAGAGACATTGGAGCTAGGGCGGCTAGTTTCACCTGGTAATTGTGACA CCCTGTCTCCTCGAGCTGCAGGCTTTTATGCTTGTCATGTTCGAAGTTTG ATACCTTGCAGATCAACAAAGGGCCGGTGGCCTCTCACTGCCTCCGCGGC AGGGTTGTCAAGTTTTTCAGGT	chr16	33189226	33201858

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1467	10	5	3	0	2	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	TCCTC others(1462): Show TCCTCCTGTAGCCCCACCATCCACCGTGGGGAACGGTGGAGAGACTACAA CTCCCAGTATGCACCGCGATGCGCGCCTCACCCTGCATCTCCCAGCCCGC AGCCAGCTGGCATCCTAGACCCTCTGCCCTGCGACCAACAGCCGGGAGCG GACCAGACACCAGAACTCCCGGAACGGTTGAAGACGGTTCCGCTCCCTGT CCCGCCTTTCGCAGCCCAGCAGTTTCGCCCTGCGGAGAGGAGCCTTGCTG TTTCCAAATCTCTCCTGCTGAAGAGACATTGGAGCTAGGGCGGCTAGTTT CACCTGGTAATTGTGACACCCTGTCTCCTCGAGCTGCAGGCTTTTATGCT TGTCATGTTCGAAGTTTGATACCTTGCAGATCAACAAAGGGCCGGTGGCC TCTCACTGCCTCCGCGGCAGGGTTGTCAAGTTTTTCAGGTTAAGTACTGC ACGACTACTCGCTTCTGAAACTGATAGACACTGCCTCAGCTCCGTGCAGG GCAGACGCACAAGAGCAGAATCTCCGTGGGACATCTCTCTGGAGCATCAA TATTACTGCAGTATTTGGAAGAAACAAATTTAAATAAGTTCTAAGGTGAA GAATGGAACATTTAAGACAAGTCTGGAAAGTCATCTGCCTTTAATAACTG TCGTTTGTCCTTAACGTCAGACTTTCTCCAAGACCAAAACTCTAAGAACT TATTTCCATTCTTACAAATAGTAAAAATGATAAATCATATCAAGTCAATT GAAAGTCCTGCCTGCTGCTTTCCTAAATTGCAATATGGCCTTGGTATGGT TTTATTTGTACTTTTGTGGGGGATTCGTGGATCTTTAGATTAAAAAAAAA AAAATAGGTTTTTGAACAATTTTTGCAAGTTTGCAGCTGTTAGTTATTGA TTTATTTTTCCAACCCATCTAATTCTTCTGTCTCTCTCCTCTCCTCAGGC TCAATAATTCCATGGGTCTCTAAGGCTGTGTTTATTTTCTTTAAATTTTG TTGATTTACTTTTATACTCCATTTGATTTTTTCTATCTCTCACCTTTTCT CAGACTCAGTCATCCCACAGGTCTGTAAGGCTCTGTTCATTTTCTTTAAA CTTCTTTTTTTTTTCCTCTCCTCAGATTGGATAAATTATATTGCTATGTC TCTGTTTCTGAACTATAGAAAAGCTCAAAATTATTATTTTTATTTCTCAT TTTTTATATGGCTATTTTTTCTCTGCTGATGTTTCACATCTATTCATTTA TGAGAATATTTTCCTTTGCCCTCATGAGCGTGTTTATAATAGCTGCCTTC AAATTCTTGTCTGCCGTTTACATCTTGGACATCTTGGAGATGGCTACTGC CTGCTTTTTATCTTGTGTATTTATTACATTTTCACGTGTCTTCACGCATC CCTTGAATTGGAAATTGTGCCCTGGAGACTGTATACAAGACTGGATTAAA AAGACTGGATTCTGTTT	chr16	33189226	33201858
a0001c0001t0002	0/0	1467	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	TCCTC others(1462): Show TCCTCCTGTAGCCCCACCATCCACCGCGGGGAACGGTGGAGAGACTACAA CTCCCAGTATGCACCGCGATGCGCGCCTCACCCTGCATCTCCCAGCCCGC AGCCAGCTGGCATCCTAGACCCTCTGCCCTGCGACCAACAGCCGGGAGCG GACCAGACACCAGAACTCCCGGAACGGTTGAAGACGGTTCCGCTCCCTGT CCCGCCTTTCGCAGCCCAGCAGTTTCGCCCTGCGGAGAGGAGCCTTGCTG TTTCCAAATCTCTCCTGCTGAAGAGACATTGGAGCTAGGGCGGCTAGTTT CACCTGGTAATTGTGACACCCTGTCTCCTCGAGCTGCAGGCTTTTATGCT TGTCATGTTCGAAGTTTGATACCTTGCAGATCAACAAAGGGCCGGTGGCC TCTCACTGCCTCCGCGGCAGGGTTGTCAAGTTTTTCAGGTTAAGTACTGC ACGACTACTCGCTTCTGAAACTGATAGACACTGCCTCAGCTCCGTGCAGG GCAGACGCACAAGAGCAGAATCTCCGTGGGACATCTCTCTGGAGCATCAA TATTACTGCAGTATTTGGAAGAAACAAATTTAAATAAGTTCTAAGGTGAA GAATGGAACATTTAAGACAAGTCTGGAAAGTCATCTGCCTTTAATAACTG TCGTTTGTCCTTAACGTCAGACTTTCTCCAAGACCAAAACTCTAAGAACT TATTTCCATTCTTACAAATAGTAAAAATGATAAATCATATCAAGTCAATT GAAAGTCCTGCCTGCTGCTTTTCTAAATTGCAATATGGCCTTGGTATGGT TTTATTTGTACTTTTGTGGGGGATTCGTGGATCTTTAGATTAAAAAAAAA AAAATAGGTTTTTGAACAATTTTTGCAAGTTTGCAGCTGTTAGTTATTGA TTTATTTTTCCAACCCATCTAATTCTTCTGTCTCTCTCCTCTCCTCAGGC TCAATAATTCCATGGGTCTCTAAGGCTGTGTTTATTTTCTTTAAATTTTG TTGATTTACTTTTATACTCCATTTGATTTTTTCTATCTCTCACCTTTTCT CAGACTCAGTCATCCCACAGGTCTGTAAGGCTCTGTTCATTTTCTTTAAA CTTCTTTTTTTTTTCCTCTCCTCAGATTGGATAAATTATATTGCTATGTC TCTGTTTCTGAACTATAGAAAAGCTCAAAATTATTATTTTTATTTCTCAT TTTTTATATGGCTATTTTTTCTCTGCTGATGTTTCACATCTATTCATTTA TGAGAATATTTTCCTTTGCCCTCATGAGCGTGTTTATAATAGCTGCCTTC AAATTCTTGTCTGCCGTTTACATCTTGGACATCTTGGAGATGGCTACTGC CTGCTTTTTATCTTGTGTATTTATTACATTTTCACGTGTCTTCACGCATC CCTTGAATTGGAAATTGTGCCCTGGAGACTGTATACAAGACTGGATTAAA AAGACTGGATTCTGTTT	chr16	33189226	33201858
a0001c0001t0003	0/0	1462	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	TCCTC others(1457): Show TCCTCCTGTAGCCCCACCATCCACCGTGGGGAACGGTGGAGAGACTACAA CTCCCAGTATGCACCGCGATGCGCGCCTCACCCTGCATCTCCCAGCCCGC AGCCAGCTGGCATCCTAGACCCTCTGCCCTGCGACCAACAGCCGGGAGCG GACCAGACACCAGAACTCCCGGAACGGTTGAAGACGGTTCCGCTCCCTGT CCCGCCTTTCGCAGCCCAGCAGTTTCGCCCTGCGGAGAGGAGCCTTGCTG TTTCCAAATCTCTCCTGCTGAAGAGACATTGGAGCTAGGGCGGCTAGTTT CACCTGGTAATTGTGACACCCTGTCTCCTCGAGCTGCAGGCTTTTATGCT TGTCATGTTCGAAGTTTGATACCTTGCAGATCAACAAAGGGCCGGTGGCC TCTCACTGCCTCCGCGGCAGGGTTGTCAAGTTTTTCAGGTTAAGTACTGC ACGACTACTCGCTTCTGAAACTGATAGACACTGCCTCAGCTCCGTGCAGG GCAGACGCACAAGAGCAGAATCTCCGTGGGACATCTCTCTGGAGCATCAA TATTACTGCAGTATTTGGAAGAAACAAATTTAAATAAGTTCTAAGGTGAA GAATGGAACATTTAAGACAAGTCTGGAAAGTCATCTGCCTTTAATAACTG TCGTTTGTCCTTAACGTCAGACTTTCTCCAAGACCAAAACTCTAAGAACT TATTTCCATTCTTACAAATAGTAAAAATGATAAATCATATCAAGTCAATT GAAAGTCCTGCCTGCTGCTTTCCTAAATTGCAATATGGCCTTGGTATGGT TTTATTTGTACTTTTGTGGGGGATTCGTGGATCTTTAGATTAAAAAAAAA AAAATAGGTTTTTGAACAATTTTTGCAAGTTTGCAGCTGTTAGTTATTGA TTTATTTTTCCAACCCATCTAATTCTTCTGTCTCTCTCCTCAGGCTCAAT AATTCCATGGGTCTCTAAGGCTGTGTTTATTTTCTTTAAATTTTGTTGAT TTACTTTTATACTCCATTTGATTTTTTCTATCTCTCACCTTTTCTCAGAC TCAGTCATCCCACAGGTCTGTAAGGCTCTGTTCATTTTCTTTAAACTTCT TTTTTTTTTCCTCTCCTCAGATTGGATAAATTATATTGCTATGTCTCTGT TTCTGAACTATAGAAAAGCTCAAAATTATTATTTTTATTTCTCATTTTTT ATATGGCTATTTTTTCTCTGCTGATGTTTCACATCTATTCATTTATGAGA ATATTTTCCTTTGCCCTCATGAGCGTGTTTATAATAGCTGCCTTCAAATT CTTGTCTGCCGTTTACATCTTGGACATCTTGGAGATGGCTACTGCCTGCT TTTTATCTTGTGTATTTATTACATTTTCACGTGTCTTCACGCATCCCTTG AATTGGAAATTGTGCCCTGGAGACTGTATACAAGACTGGATTAAAAAGAC TGGATTCTGTTT	chr16	33189226	33201858

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	6	3	2	0	1	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0002	0/0	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0003	0/0	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0004	0/0	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0005	0/0	1	0	0	0	1	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0002g0002	0/0	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0003g0001	0/0	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00738	hp1	a0001	c0001	t0001	g0003	AMR	PUR	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG00738	hp2	a0001	c0001	t0003	g0001	AMR	PUR	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01891	hp1	a0001	c0001	t0002	g0002	AFR	ACB	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01891	hp2	a0001	c0001	t0001	g0004	AFR	ACB	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03130	hp2	a0001	c0001	t0001	g0002	AFR	ESN	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
NA20805	hp1	a0001	c0001	t0001	g0005	EUR	TSI	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr16:33194252	T T	C C	1	a0001c0001t0002 a0001c0001t0002	1	HG01891.hp1 HG01891.hp1	5_prime_UTR_variant	MODIFIER	c.-42T>C c.-42T>C		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/2				42		chr16	33194252
	chr16:33196168	C C	T T	1	a0001c0001t0002 a0001c0001t0002	1	HG01891.hp1 HG01891.hp1	3_prime_UTR_variant	MODIFIER	c.329C>T c.329C>T		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	2/2				329		chr16	33196168
	chr16:33196329	T T	TCTCTC TCTCTC	2	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	11	HG00738.hp1 HG01255.hp1 HG01255.hp2 others(8): Show HG00738.hp1 HG01255.hp1 HG01255.hp2 HG01891.hp1 HG01891.hp2 HG03130.hp1 HG03130.hp2 HG03486.hp1 HG03486.hp2 NA20805.hp1 NA20805.hp2	3_prime_UTR_variant	MODIFIER	c.494_498dupTCCTC c.494_498dupTCCTC		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	2/2				499	INFO_REALIGN_3_PRIME	chr16	33196329

view	chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chr16:33195023	A A	AC AC	2	a0001c0001t0001g0002 a0001c0001t0002g0002 a0001c0001t0001g0002 a0001c0001t0002g0002	2	HG01891.hp1 HG03130.hp2 HG01891.hp1 HG03130.hp2	intron_variant	MODIFIER	c.362+371dupC c.362+371dupC		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr16	33195023
	chr16:33195074	C C	T T	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.362+419C>T c.362+419C>T		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1						chr16	33195074
	chr16:33195355	C C	T T	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.363-472C>T c.363-472C>T		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1						chr16	33195355
	chr16:33195522	G G	A A	1	a0001c0001t0001g0003 a0001c0001t0001g0003	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.363-305G>A c.363-305G>A		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1						chr16	33195522