JoGo: Joint Open Genome and Omics Platform

Search by Genic region

geneid	653550
ensemblid	ENSG00000205457.12
hgncid	42962
symbol	TP53TG3C
name	TP53 target 3C
refseq_nuc	NM_001205259.3
refseq_prot	NP_001192188.1
ensembl_nuc	ENST00000561509.3
ensembl_prot	ENSP00000455132.1
mane_status	MANE Select
chr	chr16
start	33194226
end	33196858
strand	+
ver	v1.2
region	chr16:33194226-33196858
region5000	chr16:33189226-33201858
regionname0	TP53TG3C_chr16_33194226_33196858
regionname5000	TP53TG3C_chr16_33189226_33201858

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	124	12	6	4	0	2	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	375	12	6	4	0	2	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
t0001	0/0	1093	10	5	3	0	2	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858
t0002	0/0	1093	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858
t0003	0/0	1088	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0001	0/0	7	3	3	0	1	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
g0002	0/0	2	2	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
g0003	0/0	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
g0004	0/0	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
g0005	0/0	1	0	0	0	1	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	375	12	6	4	0	2	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1467	10	5	3	0	2	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858
a0001c0001t0002	0/0	1467	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858
a0001c0001t0003	0/0	1462	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	copy fasta	chr16	33189226	33201858

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	6	3	2	0	1	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0002	0/0	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0003	0/0	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0004	0/0	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0001g0005	0/0	1	0	0	0	1	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0002g0002	0/0	1	1	0	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
a0001c0001t0003g0001	0/0	1	0	1	0	0	0	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00738	hp1	a0001	c0001	t0001	g0003	AMR	PUR	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG00738	hp2	a0001	c0001	t0003	g0001	AMR	PUR	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01255	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01255	hp2	a0001	c0001	t0001	g0001	AMR	CLM	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01891	hp1	a0001	c0001	t0002	g0002	AFR	ACB	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG01891	hp2	a0001	c0001	t0001	g0004	AFR	ACB	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03130	hp2	a0001	c0001	t0001	g0002	AFR	ESN	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03486	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
HG03486	hp2	a0001	c0001	t0001	g0001	AFR	MSL	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
NA20805	hp1	a0001	c0001	t0001	g0005	EUR	TSI	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858
NA20805	hp2	a0001	c0001	t0001	g0001	EUR	TSI	TP53TG3C_chr16_33189226_33201858	TP53TG3C	chr16	33189226	33201858

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr16:33194252	T T	C C	1	a0001c0001t0002 a0001c0001t0002	1	HG01891.hp1 HG01891.hp1	5_prime_UTR_variant	MODIFIER	c.-42T>C c.-42T>C		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/2				42		chr16	33194252
chr16:33196168	C C	T T	1	a0001c0001t0002 a0001c0001t0002	1	HG01891.hp1 HG01891.hp1	3_prime_UTR_variant	MODIFIER	c.329C>T c.329C>T		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	2/2				329		chr16	33196168
chr16:33196329	T T	TCTCTC TCTCTC	2	a0001c0001t0001 a0001c0001t0002 a0001c0001t0001 a0001c0001t0002	11	HG00738.hp1 HG01255.hp1 HG01255.hp2 others(8): Show HG00738.hp1 HG01255.hp1 HG01255.hp2 HG01891.hp1 HG01891.hp2 HG03130.hp1 HG03130.hp2 HG03486.hp1 HG03486.hp2 NA20805.hp1 NA20805.hp2	3_prime_UTR_variant	MODIFIER	c.494_498dupTCCTC c.494_498dupTCCTC		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	2/2				499	INFO_REALIGN_3_PRIME	chr16	33196329

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
chr16:33195023	A A	AC AC	2	a0001c0001t0001g0002 a0001c0001t0002g0002 a0001c0001t0001g0002 a0001c0001t0002g0002	2	HG01891.hp1 HG03130.hp2 HG01891.hp1 HG03130.hp2	intron_variant	MODIFIER	c.362+371dupC c.362+371dupC		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1					INFO_REALIGN_3_PRIME	chr16	33195023
chr16:33195074	C C	T T	1	a0001c0001t0001g0005 a0001c0001t0001g0005	1	NA20805.hp1 NA20805.hp1	intron_variant	MODIFIER	c.362+419C>T c.362+419C>T		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1						chr16	33195074
chr16:33195355	C C	T T	1	a0001c0001t0001g0004 a0001c0001t0001g0004	1	HG01891.hp2 HG01891.hp2	intron_variant	MODIFIER	c.363-472C>T c.363-472C>T		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1						chr16	33195355
chr16:33195522	G G	A A	1	a0001c0001t0001g0003 a0001c0001t0001g0003	1	HG00738.hp1 HG00738.hp1	intron_variant	MODIFIER	c.363-305G>A c.363-305G>A		TP53TG3C	ENSG00000205457.12	transcript	ENST00000561509.3	protein_coding	1/1						chr16	33195522