Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	64591
ensemblid	ENSG00000168757.13
hgncid	23924
symbol	TSPY2
name	testis specific protein Y-linked 2
refseq_nuc	NM_022573.4
refseq_prot	NP_072095.2
ensembl_nuc	ENST00000320701.9
ensembl_prot	ENSP00000314077.4
mane_status	MANE Select
chr	chrY
start	6246223
end	6249018
strand	+
ver	v1.2
region	chrY:6246223-6249018
region5000	chrY:6241223-6254018
regionname0	TSPY2_chrY_6246223_6249018
regionname5000	TSPY2_chrY_6241223_6254018

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	308	95	11	19	46	4	15	39	TSPY2_chrY_6241223_6254018	TSPY2	MRPEG others(303): Show MRPEGSLTYRVPERLRQGSCGVGRAAQALVCASAKEGTAFRMEAVQEGAA GVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGP GPMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGA VIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHRVHLCK IMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRH HNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET SGDSQLLS	chrY	6241223	6254018
a0002	0/0	308	11	0	0	11	0	0	6	TSPY2_chrY_6241223_6254018	TSPY2	MRPEG others(303): Show MRPEGSLTYRVPERLRQGSCGVGRAAQALVCASAKEGTAFRMEAVQEGAA GVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVGRREEAQRAQQAVPGP GPMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGA VIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHRVHLCK IMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRH HNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET SGDSQLLS	chrY	6241223	6254018
a0003	0/0	308	1	1	0	0	0	0	0	TSPY2_chrY_6241223_6254018	TSPY2	MRPEG others(303): Show MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAA GVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGP GPMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGA VIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHRVHLCK IMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRH HNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET SGDSQLLS	chrY	6241223	6254018
a0004	0/0	70	1	0	0	1	0	0	1	TSPY2_chrY_6241223_6254018	TSPY2	MRPEG others(65): Show MRPEGSLTYRVPERLRQGSCGVGRAAQAFGVCECQGGHRLQDGGCAGGGR PGWRVSRRLWGRRRCCCWMT	chrY	6241223	6254018

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	924	95	11	19	46	4	15	TSPY2_chrY_6241223_6254018	TSPY2	ATGCG others(919): Show ATGCGCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCA GGGTTCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTG CCAAGGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCC GGGGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTT GGATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCG TGGAGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCT GGGCCCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGT GGAGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGC GGGAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCC GTCATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCC CCAGATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACA TGGTCAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAG ATCATGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTAC CAAGGAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTC CAATTGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACAC CACAACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGC AGGATCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATC CCCTGCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACG TCAGGGGACTCCCAGTTGTTGAGT	chrY	6241223	6254018
a0002c0002	0/0	924	11	0	0	11	0	0	TSPY2_chrY_6241223_6254018	TSPY2	ATGCG others(919): Show ATGCGCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCA GGGTTCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTG CCAAGGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCC GGGGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTT GGATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCG TGGGGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCT GGGCCCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGT GGAGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGC GGGAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCC GTCATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCC CCAGATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACA TGGTCAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAG ATCATGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTAC CAAGGAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTC CAATTGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACAC CACAACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGC AGGATCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATC CCCTGCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACG TCAGGGGACTCCCAGTTGTTGAGT	chrY	6241223	6254018
a0003c0004	0/0	924	1	1	0	0	0	0	TSPY2_chrY_6241223_6254018	TSPY2	ATGCG others(919): Show ATGCGCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCA GGGTTTCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTG CCAAGGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCC GGGGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTT GGATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCG TGGAGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCT GGGCCCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGT GGAGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGC GGGAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCC GTCATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCC CCAGATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACA TGGTCAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAG ATCATGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTAC CAAGGAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTC CAATTGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACAC CACAACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGC AGGATCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATC CCCTGCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACG TCAGGGGACTCCCAGTTGTTGAGT	chrY	6241223	6254018
a0004c0003	0/0	926	1	0	0	1	0	0	TSPY2_chrY_6241223_6254018	TSPY2	ATGCG others(921): Show ATGCGCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCA GGGTTCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTTGGTGTGTGCGAGT GCCAAGGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGGCGG CCGGGGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTG TTGGATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCT CGTGGGGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCC CTGGGCCCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAG GTGGAGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCA GCGGGAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCG CCGTCATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCAC CCCCAGATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTA CATGGTCAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCA AGATCATGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATT ACCAAGGAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCAC TCCAATTGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGAC ACCACAACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTC GCAGGATCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAA TCCCCTGCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGA CGTCAGGGGACTCCCAGTTGTTGAGT	chrY	6241223	6254018

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	0/0	1166	91	10	19	43	4	15	TSPY2_chrY_6241223_6254018	TSPY2	GGCTC others(1161): Show GGCTCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCAGGGT TCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAA GGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCGTGGA GCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCTGGGC CCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGTGGAG CTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGCGGGA AAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCCGTCA TCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCCCCAG ATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACATGGT CAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAGATCA TGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTACCAAG GAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTCCAAT TGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACACCACA ACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGCAGGA TCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATCCCCT GCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACGTCAG GGGACTCCCAGTTGTTGAGTTGAATATGATGGAGCATCAGATTTTACCTA ATACAGCAGAACTCCTAAAAAGTTACAGCCATATGCAGGACAGCAGTACT CAGCATGGTCTTATGCACAGGAACTAAAGGAAAAAGAGATCGAGTCACAA AAATTCAGGAAGAGGGGGTAAATGTGGATTGTATGGAATGAAAAATAAAC ATTCTCAAGGATGTGT	chrY	6241223	6254018
a0001c0001t0002	0/0	1167	3	0	0	3	0	0	TSPY2_chrY_6241223_6254018	TSPY2	GGCTC others(1162): Show GGCTCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCAGGGT TCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAA GGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCGTGGA GCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCTGGGC CCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGTGGAG CTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGCGGGA AAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCCGTCA TCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCCCCAG ATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACATGGT CAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAGATCA TGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTACCAAG GAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTCCAAT TGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACACCACA ACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGCAGGA TCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATCCCCT GCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACGTCAG GGGACTCCCAGTTGTTGAGTTGAATATGATGGAGCATCAGATTTTACCTA ATACAGCAGAACTCCTAAAAAGTTACAGCCATATGCAGGACGGCAGTACT CAGCATGGTCTTTATGCACAGGAACTAAAGGAAAAAGAGATCGAGTCACA AAAATTCAGGAAGAGGGGGTAAATGTGGATTGTATGGAATGAAAAATAAA CATTCTCAAGGATGTGT	chrY	6241223	6254018
a0001c0001t0003	0/0	1166	1	1	0	0	0	0	TSPY2_chrY_6241223_6254018	TSPY2	GGCTC others(1161): Show GGCTCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCAGGGT TCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAA GGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCGTGGA GCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCTGGGC CCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGTGGAG CTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGCGGGA AAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCCGTCA TCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCCCCAG ATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACATGGT CAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAGATCA TGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTACCAAG GAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTCCAAT TGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACACCACA ACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGCAGGA TCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATCCCCT GCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACGTCAG GGGACTCCCAGTTGTTGAGTTGAATATGATGGAGCATCAGATTTTACCTA ATACAGCAGAACTCCTAAAAAGTTACAGCCATATGCAGGACGGCAGTACT CAGCATGGTCTTATGCACAGGAACTAAAGGAAAAAGAGATCGAGTCACAA AAATTCAGGAAGAGGGGGTAAATGTGGATTGTATGGAATGAAAAATAAAC ATTCTCAAGGATGTGT	chrY	6241223	6254018
a0002c0002t0001	0/0	1166	11	0	0	11	0	0	TSPY2_chrY_6241223_6254018	TSPY2	GGCTC others(1161): Show GGCTCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCAGGGT TCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAA GGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCGTGGG GCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCTGGGC CCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGTGGAG CTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGCGGGA AAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCCGTCA TCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCCCCAG ATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACATGGT CAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAGATCA TGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTACCAAG GAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTCCAAT TGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACACCACA ACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGCAGGA TCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATCCCCT GCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACGTCAG GGGACTCCCAGTTGTTGAGTTGAATATGATGGAGCATCAGATTTTACCTA ATACAGCAGAACTCCTAAAAAGTTACAGCCATATGCAGGACAGCAGTACT CAGCATGGTCTTATGCACAGGAACTAAAGGAAAAAGAGATCGAGTCACAA AAATTCAGGAAGAGGGGGTAAATGTGGATTGTATGGAATGAAAAATAAAC ATTCTCAAGGATGTGT	chrY	6241223	6254018
a0003c0004t0001	0/0	1166	1	1	0	0	0	0	TSPY2_chrY_6241223_6254018	TSPY2	GGCTC others(1161): Show GGCTCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCAGGGT TTCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAA GGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCGTGGA GCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCTGGGC CCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGTGGAG CTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGCGGGA AAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCCGTCA TCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCCCCAG ATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACATGGT CAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAGATCA TGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTACCAAG GAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTCCAAT TGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACACCACA ACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGCAGGA TCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATCCCCT GCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACGTCAG GGGACTCCCAGTTGTTGAGTTGAATATGATGGAGCATCAGATTTTACCTA ATACAGCAGAACTCCTAAAAAGTTACAGCCATATGCAGGACAGCAGTACT CAGCATGGTCTTATGCACAGGAACTAAAGGAAAAAGAGATCGAGTCACAA AAATTCAGGAAGAGGGGGTAAATGTGGATTGTATGGAATGAAAAATAAAC ATTCTCAAGGATGTGT	chrY	6241223	6254018
a0004c0003t0001	0/0	1168	1	0	0	1	0	0	TSPY2_chrY_6241223_6254018	TSPY2	GGCTC others(1163): Show GGCTCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCAGGGT TCCTGTGGCGTGGGTCGGGCAGCACAGGCCTTTGGTGTGTGCGAGTGCCA AGGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGGCGGCCGG GGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGG ATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGAGGAGGGCCTCGTG GGGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGGCTGTGCCTGGCCCTGG GCCCATGACCCCAGAGTCTGCACTGGAGGAGCTGCTGGCCGTTCAGGTGG AGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGCCTTTTCTCGGCAGCGG GAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAGACCGCAGAGGCGCCGT CATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTTATTGCAAACCACCCCC AGATGTCAGCCCTGATCACTGACGAAGATGAAGACATGCTGAGCTACATG GTCAGCCTGGAGGTGGAAGAAGAGAAGCATCGTGTTCATCTCTGCAAGAT CATGTTGTTCTTTCGGAGTAACCCCTACTTCCAGAATAAAGTGATTACCA AGGAATATCTGGTGAACATCACAGAATACAGGGCTTCTCATTCCACTCCA ATTGAGTGGTATCCGGATTATGAAGTGGAGGCCTATCGCCGCAGACACCA CAACAGCAGCCTTAACTTCTTCAACTGGTTCTCTGACCACAACTTCGCAG GATCTAACAAGATTGCTGAGATCCTATGTAAGGACCTGTGGCGCAATCCC CTGCAATACTACAAGAGGATGAAGCCACCTGAAGAGGGAACAGAGACGTC AGGGGACTCCCAGTTGTTGAGTTGAATATGATGGAGCATCAGATTTTACC TAATACAGCAGAACTCCTAAAAAGTTACAGCCATATGCAGGACAGCAGTA CTCAGCATGGTCTTATGCACAGGAACTAAAGGAAAAAGAGATCGAGTCAC AAAAATTCAGGAAGAGGGGGTAAATGTGGATTGTATGGAATGAAAAATAA ACATTCTCAAGGATGTGT	chrY	6241223	6254018

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0001	0/0	81	10	14	38	4	15	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0001c0001t0001g0002	0/0	5	0	5	0	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0001c0001t0001g0004	0/0	2	0	0	2	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0001c0001t0001g0007	0/0	1	0	0	1	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0001c0001t0001g0008	0/0	1	0	0	1	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0001c0001t0001g0009	0/0	1	0	0	1	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0001c0001t0002g0003	0/0	3	0	0	3	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0001c0001t0003g0001	0/0	1	1	0	0	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0002c0002t0001g0001	0/0	10	0	0	10	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0002c0002t0001g0006	0/0	1	0	0	1	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0003c0004t0001g0001	0/0	1	1	0	0	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
a0004c0003t0001g0005	0/0	1	0	0	1	0	0	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00140	hp1	a0001	c0001	t0001	g0001	EUR	GBR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG00642	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG00738	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01069	hp1	a0001	c0001	t0001	g0002	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01074	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01099	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01109	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01167	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01192	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01243	hp1	a0001	c0001	t0001	g0001	AMR	PUR	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01255	hp1	a0001	c0001	t0001	g0002	AMR	CLM	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01256	hp1	a0001	c0001	t0001	g0002	AMR	CLM	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01258	hp2	a0001	c0001	t0001	g0002	AMR	CLM	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01261	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01358	hp1	a0001	c0001	t0001	g0001	AMR	CLM	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01433	hp1	a0001	c0001	t0001	g0002	AMR	CLM	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01515	hp1	a0001	c0001	t0001	g0001	EUR	IBS	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01928	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01934	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01943	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG01952	hp1	a0001	c0001	t0001	g0001	AMR	PEL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02015	hp1	a0001	c0001	t0001	g0009	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02027	hp1	a0002	c0002	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02040	hp1	a0001	c0001	t0001	g0008	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02055	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02056	hp1	a0002	c0002	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02071	hp1	a0002	c0002	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02074	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02083	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02129	hp1	a0002	c0002	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02132	hp1	a0001	c0001	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02135	hp1	a0002	c0002	t0001	g0001	EAS	KHV	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02145	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02258	hp1	a0001	c0001	t0001	g0001	AFR	ACB	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02572	hp1	a0003	c0004	t0001	g0001	AFR	GWD	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02602	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02647	hp1	a0001	c0001	t0003	g0001	AFR	GWD	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02698	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02717	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02738	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02895	hp1	a0001	c0001	t0001	g0001	AFR	GWD	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG02965	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03017	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03130	hp1	a0001	c0001	t0001	g0001	AFR	ESN	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03225	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03490	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03492	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03579	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03654	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03688	hp2	a0001	c0001	t0001	g0001	SAS	STU	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03710	hp1	a0001	c0001	t0001	g0001	SAS	PJL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03942	hp1	a0001	c0001	t0001	g0001	SAS	BEB	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG04115	hp1	a0001	c0001	t0001	g0001	SAS	STU	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG04199	hp1	a0001	c0001	t0001	g0001	SAS	STU	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG04204	hp1	a0001	c0001	t0001	g0001	SAS	STU	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG04228	hp1	a0001	c0001	t0001	g0001	SAS	STU	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18612	hp2	a0001	c0001	t0001	g0004	EAS	CHB	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18747	hp1	a0001	c0001	t0001	g0001	EAS	CHB	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18940	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18943	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18944	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18945	hp1	a0002	c0002	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18948	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18952	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18960	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18961	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18962	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18965	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18966	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18967	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18970	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18971	hp1	a0001	c0001	t0002	g0003	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18977	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18982	hp1	a0002	c0002	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18985	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18986	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18989	hp1	a0001	c0001	t0002	g0003	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18990	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18994	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18995	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19000	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19004	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19005	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19006	hp1	a0001	c0001	t0002	g0003	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19007	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19055	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19056	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19060	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19063	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19066	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19067	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19068	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19070	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19072	hp1	a0002	c0002	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19075	hp1	a0001	c0001	t0001	g0007	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19076	hp1	a0004	c0003	t0001	g0005	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19079	hp1	a0001	c0001	t0001	g0004	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19082	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19083	hp1	a0002	c0002	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19085	hp1	a0002	c0002	t0001	g0006	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19086	hp1	a0002	c0002	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19088	hp2	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA19089	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA20752	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA20805	hp1	a0001	c0001	t0001	g0001	EUR	TSI	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA20905	hp1	a0001	c0001	t0001	g0001	SAS	GIH	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
HG03471	hp1	a0001	c0001	t0001	g0001	AFR	MSL	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018
NA18955	hp1	a0001	c0001	t0001	g0001	EAS	JPT	TSPY2_chrY_6241223_6254018	TSPY2	chrY	6241223	6254018

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	status	chr	pos
chrY:6246324	C C	T T	1	a0003 a0003	1	HG02572.hp1 HG02572.hp1	missense_variant	MODERATE	c.56C>T c.56C>T	p.Ser19Phe p.Ser19Phe	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/6	102/1166	56/927	19/308		chrY	6246324
chrY:6246352	C C	CT CT	1	a0004 a0004	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.86dupT c.86dupT	p.Leu29fs p.Leu29fs	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/6	133/1166	87/927	29/308	INFO_REALIGN_3_PRIME	chrY	6246352
chrY:6246408	A A	AG AG	1	a0004 a0004	1	NA19076.hp1 NA19076.hp1	frameshift_variant	HIGH	c.145dupG c.145dupG	p.Ala49fs p.Ala49fs	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/6	192/1166	146/927	49/308	INFO_REALIGN_3_PRIME	chrY	6246408
chrY:6246522	A A	G G	2	a0002 a0004 a0002 a0004	12	HG02027.hp1 HG02056.hp1 HG02071.hp1 others(9): Show HG02027.hp1 HG02056.hp1 HG02071.hp1 HG02129.hp1 HG02135.hp1 NA18945.hp1 NA18982.hp1 NA19072.hp1 NA19076.hp1 NA19083.hp1 NA19085.hp1 NA19086.hp1	missense_variant	MODERATE	c.254A>G c.254A>G	p.Glu85Gly p.Glu85Gly	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/6	300/1166	254/927	85/308		chrY	6246522

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:6248894	A A	G G	2	a0001c0001t0002 a0001c0001t0003 a0001c0001t0002 a0001c0001t0003	4	HG02647.hp1 NA18971.hp1 NA18989.hp1 others(1): Show HG02647.hp1 NA18971.hp1 NA18989.hp1 NA19006.hp1	3_prime_UTR_variant	MODIFIER	c.69A>G c.69A>G		TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	6/6				69		chrY	6248894
	chrY:6248912	C C	CT CT	1	a0001c0001t0002 a0001c0001t0002	3	NA18971.hp1 NA18989.hp1 NA19006.hp1 NA18971.hp1 NA18989.hp1 NA19006.hp1	3_prime_UTR_variant	MODIFIER	c.89dupT c.89dupT		TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	6/6				90	INFO_REALIGN_3_PRIME	chrY	6248912

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	status	chr	pos
chrY:6246857	A A	G G	1	a0001c0001t0001g0009 a0001c0001t0001g0009	1	HG02015.hp1 HG02015.hp1	intron_variant	MODIFIER	c.486+103A>G c.486+103A>G	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/5		chrY	6246857
chrY:6246872	C C	T T	1	a0001c0001t0001g0008 a0001c0001t0001g0008	1	HG02040.hp1 HG02040.hp1	intron_variant	MODIFIER	c.486+118C>T c.486+118C>T	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/5		chrY	6246872
chrY:6246921	T T	TC TC	1	a0004c0003t0001g0005 a0004c0003t0001g0005	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.486+169dupC c.486+169dupC	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrY	6246921
chrY:6247222	CG CG	C C	1	a0004c0003t0001g0005 a0004c0003t0001g0005	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.487-130delG c.487-130delG	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	1/5	INFO_REALIGN_3_PRIME	chrY	6247222
chrY:6248307	T T	G G	1	a0002c0002t0001g0006 a0002c0002t0001g0006	1	NA19085.hp1 NA19085.hp1	intron_variant	MODIFIER	c.904+199T>G c.904+199T>G	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	5/5		chrY	6248307
chrY:6248326	C C	CG CG	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.904+221dupG c.904+221dupG	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrY	6248326
chrY:6248463	A A	G G	1	a0001c0001t0002g0003 a0001c0001t0002g0003	3	NA18971.hp1 NA18989.hp1 NA19006.hp1 NA18971.hp1 NA18989.hp1 NA19006.hp1	intron_variant	MODIFIER	c.905-340A>G c.905-340A>G	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	5/5		chrY	6248463
chrY:6248541	G G	C C	1	a0001c0001t0001g0002 a0001c0001t0001g0002	5	HG01069.hp1 HG01255.hp1 HG01256.hp1 others(2): Show HG01069.hp1 HG01255.hp1 HG01256.hp1 HG01258.hp2 HG01433.hp1	intron_variant	MODIFIER	c.905-262G>C c.905-262G>C	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	5/5		chrY	6248541
chrY:6248686	G G	A A	1	a0001c0001t0001g0004 a0001c0001t0001g0004	2	NA18612.hp2 NA19079.hp1 NA18612.hp2 NA19079.hp1	intron_variant	MODIFIER	c.905-117G>A c.905-117G>A	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	5/5		chrY	6248686
chrY:6248699	CA CA	C C	1	a0001c0001t0001g0007 a0001c0001t0001g0007	1	NA19075.hp1 NA19075.hp1	intron_variant	MODIFIER	c.905-101delA c.905-101delA	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrY	6248699
chrY:6248703	TG TG	T T	1	a0004c0003t0001g0005 a0004c0003t0001g0005	1	NA19076.hp1 NA19076.hp1	intron_variant	MODIFIER	c.905-96delG c.905-96delG	TSPY2	ENSG00000168757.13	transcript	ENST00000320701.9	protein_coding	5/5	INFO_REALIGN_3_PRIME	chrY	6248703

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JoGo Haplotype Explorer

TSPY2_chrY_6241223_6254018 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 4)

Coding Level Haplotype Info (Total: 4)

Transcript Level Haplotype Info (Total: 6)

Genebody Level Haplotype Info (Total: 12)

Haplotype Details by Sample (Haploid Level) (Total: 108)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 4)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 0)

Transcript Level Haplotype Variants (Exon) (Total: 2)

Genebody Level Haplotype Variants (Intron) (Total: 11)

Annotation (Repeats)

Annotation (SNP Array)