Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	728395
ensemblid	ENSG00000233803.9
hgncid	37287
symbol	TSPY4
name	testis specific protein Y-linked 4
refseq_nuc	NM_001164471.2
refseq_prot	NP_001157943.1
ensembl_nuc	ENST00000426950.6
ensembl_prot	ENSP00000399668.2
mane_status	MANE Select
chr	chrY
start	9337464
end	9340278
strand	+
ver	v1.2
region	chrY:9337464-9340278
region5000	chrY:9332464-9345278
regionname0	TSPY4_chrY_9337464_9340278
regionname5000	TSPY4_chrY_9332464_9345278

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	314	1	0	0	1	0	0	1	TSPY4_chrY_9332464_9345278	TSPY4	MRPEG others(309): Show MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAA GVESEQAALGEEAVLLLDDIMAEVEVVAEVEVVAEEEGLVERREEAQRAQ QAVPGPGPMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPH LDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKH PVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVE AYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPP EEGTETSGDSQLLS	chrY	9332464	9345278
a0002	0/0	54	1	0	0	1	0	0	1	TSPY4_chrY_9332464_9345278	TSPY4	MRPEG others(49): Show MRPEGSLTYRGAREAAAGFLWRGSAAQALVCASAKEGTAFRMEAVQEGGG RGGE	chrY	9332464	9345278
a0003	0/0	314	1	0	0	1	0	0	1	TSPY4_chrY_9332464_9345278	TSPY4	MRPEG others(309): Show MRPEGSLTYWVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAA GVESEQAALGEEAVLLLDDIMAEVEVVAEVEVVAEEEGLVERREEAQRAQ QAVPGPGPMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPH LDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKH PVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVE AYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPP EEGTETSGDSQLLS	chrY	9332464	9345278

achapid	grch38/ chm13v2	alen	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	aseq	cseq	chr	start	end
a0001c0002	0/0		942	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4		ATGCG others(937): Show ATGCGCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCA GGGTTTCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTG CCAAGGAGGGCACCGCCTTCAGGATGGAGGCTGTACAGGAGGGGGCGGCC GGGGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTT GGATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGTGGAGGTGGTGG CGGAGGAGGAGGGCCTCGTGGAGCGGCGGGAGGAGGCCCAGCGGGCACAG CAGGCTGTGCCTGGCCCTGGGCCCATGACCCCAGAGTCTGCACTGGAGGA GCTGCTGGCCGTTCAGGTGGAGCTGGAGCCGGTTAATGCCCAAGCCAGGA AGGCCTTTTCTCGGCAGCGGGAAAAGATGGAGCGGAGGCGCAAGCCCCAC CTAGACCGCAGAGGCGCCGTCATCCAGAGCGTCCCTGGCTTCTGGGCCAA TGTTATTGCAAACCACCCCCAGATGTCAGCCCTGATCACTGACGAAGATG AAGACATGCTGAGCTACATGGTCAGCCTGGAGGTGGAAGAAGAGAAGCAT CCTGTTCATCTCTGCAAGATCATGTTGTTCTTTCGGAGTAACCCCTACTT CCAGAATAAAGTGATTACCAAGGAATATCTGGTGAACATCACAGAATACA GGGCTTCTCATTCCACTCCAATTGAGTGGTATCCGGATTATGAAGTGGAG GCCTATCGCCGCAGACACCACAACAGCAGCCTTAACTTCTTCAACTGGTT CTCTGACCACAACTTCGCAGGATCTAACAAGATTGCTGAGATCCTATGTA AGGACCTGTGGCGCAATCCCCTGCAATACTACAAGAGGATGAAGCCACCT GAAGAGGGAACAGAGACGTCAGGGGACTCCCAGTTGTTGAGT	chrY	9332464	9345278
a0002c0001	0/0		945	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4		ATGCG others(940): Show ATGCGCCCTGAGGGCTCGCTGACCTACCGGGGTGCCAGAGAGGCTGCGGC AGGGTTTCTGTGGCGTGGGTCGGCAGCACAGGCCTTGGTGTGTGCGAGTG CCAAGGAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGGCGGC CGGGGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGT TGGATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGTGGAGGTGGTG GCGGAGGAGGAGGGCCTCGTGGAGCGGCGGGAGGAGGCCCAGCGGGCACA GCAGGCTGTGCCTGGCCCTGGGCCCATGACCCCAGAGTCTGCACTGGAGG AGCTGCTGGCCGTTCAGGTGGAGCTGGAGCCGGTTAATGCCCAAGCCAGG AAGGCCTTTTCTCGGCAGCGGGAAAAGATGGAGCGGAGGCGCAAGCCCCA CCTAGACCGCAGAGGCGCCGTCATCCAGAGCGTCCCTGGCTTCTGGGCCA ATGTTATTGCAAACCACCCCCAGATGTCAGCCCTGATCACTGACGAAGAT GAAGACATGCTGAGCTACATGGTCAGCCTGGAGGTGGAAGAAGAGAAGCA TCCTGTTCATCTCTGCAAGATCATGTTGTTCTTTCGGAGTAACCCCTACT TCCAGAATAAAGTGATTACCAAGGAATATCTGGTGAACATCACAGAATAC AGGGCTTCTCATTCCACTCCAATTGAGTGGTATCCGGATTATGAAGTGGA GGGCCTATCGCCGCAGACACCACAACAGCAGCCTTAACTTCTTCAACTGG TTCTCTGACCACAAACTTCGCAGGATCTAACAAGATTGCTGAGATCCTAT GTAAGGACCTGTGGCGCAATCCCCTGCAATACTACAAGAGGATGAAGCCA CCTGAAGAGGGAACAGAGACGTCAGGGGACTCCCAGTTGTTGAGT	chrY	9332464	9345278
a0003c0003	0/0		942	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4		ATGCG others(937): Show ATGCGCCCTGAGGGCTCGCTGACCTACTGGGTGCCAGAGAGGCTGCGGCA GGGTTTCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTG CCAAGGAGGGCACCGCCTTCAGGATGGAGGCTGTACAGGAGGGGGCGGCC GGGGTGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTT GGATGACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGTGGAGGTGGTGG CGGAGGAGGAGGGCCTCGTGGAGCGGCGGGAGGAGGCCCAGCGGGCACAG CAGGCTGTGCCTGGCCCTGGGCCCATGACCCCAGAGTCTGCACTGGAGGA GCTGCTGGCCGTTCAGGTGGAGCTGGAGCCGGTTAATGCCCAAGCCAGGA AGGCCTTTTCTCGGCAGCGGGAAAAGATGGAGCGGAGGCGCAAGCCCCAC CTAGACCGCAGAGGCGCCGTCATCCAGAGCGTCCCTGGCTTCTGGGCCAA TGTTATTGCAAACCACCCCCAGATGTCAGCCCTGATCACTGACGAAGATG AAGACATGCTGAGCTACATGGTCAGCCTGGAGGTGGAAGAAGAGAAGCAT CCTGTTCATCTCTGCAAGATCATGTTGTTCTTTCGGAGTAACCCCTACTT CCAGAATAAAGTGATTACCAAGGAATATCTGGTGAACATCACAGAATACA GGGCTTCTCATTCCACTCCAATTGAGTGGTATCCGGATTATGAAGTGGAG GCCTATCGCCGCAGACACCACAACAGCAGCCTTAACTTCTTCAACTGGTT CTCTGACCACAACTTCGCAGGATCTAACAAGATTGCTGAGATCCTATGTA AGGACCTGTGGCGCAATCCCCTGCAATACTACAAGAGGATGAAGCCACCT GAAGAGGGAACAGAGACGTCAGGGGACTCCCAGTTGTTGAGT	chrY	9332464	9345278

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0002t0001	0/0	1179	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4	GGCCC others(1174): Show GGCCCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACCGGGTGCCAGAGAGGCTGCGGCAGGGT TTCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAA GGAGGGCACCGCCTTCAGGATGGAGGCTGTACAGGAGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGTGGAGGTGGTGGCGGA GGAGGAGGGCCTCGTGGAGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGG CTGTGCCTGGCCCTGGGCCCATGACCCCAGAGTCTGCACTGGAGGAGCTG CTGGCCGTTCAGGTGGAGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGC CTTTTCTCGGCAGCGGGAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAG ACCGCAGAGGCGCCGTCATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTT ATTGCAAACCACCCCCAGATGTCAGCCCTGATCACTGACGAAGATGAAGA CATGCTGAGCTACATGGTCAGCCTGGAGGTGGAAGAAGAGAAGCATCCTG TTCATCTCTGCAAGATCATGTTGTTCTTTCGGAGTAACCCCTACTTCCAG AATAAAGTGATTACCAAGGAATATCTGGTGAACATCACAGAATACAGGGC TTCTCATTCCACTCCAATTGAGTGGTATCCGGATTATGAAGTGGAGGCCT ATCGCCGCAGACACCACAACAGCAGCCTTAACTTCTTCAACTGGTTCTCT GACCACAACTTCGCAGGATCTAACAAGATTGCTGAGATCCTATGTAAGGA CCTGTGGCGCAATCCCCTGCAATACTACAAGAGGATGAAGCCACCTGAAG AGGGAACAGAGACGTCAGGGGACTCCCAGTTGTTGAGTTGAATATGATGG AGCATCAGATTTTACCTAATACAGCAGAACTCCTAAAAAGTTACAGCCAT ATGCAGGACGGCAGTACTCAGCATGGTCTTATGCACAGGAACTAAAGGAA AAAGAGATCGAGTCACAAAAATTCAGGAAGAGGGGGTAAATGTGGATTGT ATGGAATGAAAAATAAACATTCTCAAGGA	chrY	9332464	9345278
a0002c0001t0002	0/0	1182	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4	GGCCC others(1177): Show GGCCCTTCGCGCGCAGTCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGCG CCCTGAGGGCTCGCTGACCTACCGGGGTGCCAGAGAGGCTGCGGCAGGGT TTCTGTGGCGTGGGTCGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAAG GAGGGCACCGCCTTCAGGATGGAGGCTGTGCAGGAGGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGTGGAGGTGGTGGCGGA GGAGGAGGGCCTCGTGGAGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGG CTGTGCCTGGCCCTGGGCCCATGACCCCAGAGTCTGCACTGGAGGAGCTG CTGGCCGTTCAGGTGGAGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGC CTTTTCTCGGCAGCGGGAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAG ACCGCAGAGGCGCCGTCATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTT ATTGCAAACCACCCCCAGATGTCAGCCCTGATCACTGACGAAGATGAAGA CATGCTGAGCTACATGGTCAGCCTGGAGGTGGAAGAAGAGAAGCATCCTG TTCATCTCTGCAAGATCATGTTGTTCTTTCGGAGTAACCCCTACTTCCAG AATAAAGTGATTACCAAGGAATATCTGGTGAACATCACAGAATACAGGGC TTCTCATTCCACTCCAATTGAGTGGTATCCGGATTATGAAGTGGAGGGCC TATCGCCGCAGACACCACAACAGCAGCCTTAACTTCTTCAACTGGTTCTC TGACCACAAACTTCGCAGGATCTAACAAGATTGCTGAGATCCTATGTAAG GACCTGTGGCGCAATCCCCTGCAATACTACAAGAGGATGAAGCCACCTGA AGAGGGAACAGAGACGTCAGGGGACTCCCAGTTGTTGAGTTGAATATGAT GGAGCATCAGATTTTTACCTAATACAGCAGAACTCCTAAAAAGTTACAGC CATATGCAGGACGGCAGTACTCAGCATGGTCTTATGCACAGGAACTAAAG GAAAAAGAGATCGAGTCACAAAAATTCAGGAAGAGGGGGTAAATGTGGAT TGTATGGAATGAAAAATAAACATTCTCAAGGA	chrY	9332464	9345278
a0003c0003t0001	0/0	1179	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4	GGCCC others(1174): Show GGCCCTTCGCGCGCAGTCCCTTAGGGGGCGCCTGGAAGCCCGGCGCATGC GCCCTGAGGGCTCGCTGACCTACTGGGTGCCAGAGAGGCTGCGGCAGGGT TTCTGTGGCGTGGGTCGGGCAGCACAGGCCTTGGTGTGTGCGAGTGCCAA GGAGGGCACCGCCTTCAGGATGGAGGCTGTACAGGAGGGGGCGGCCGGGG TGGAGAGTGAGCAGGCGGCTTTGGGGGAGGAGGCGGTGCTGCTGTTGGAT GACATAATGGCGGAGGTGGAGGTGGTGGCGGAGGTGGAGGTGGTGGCGGA GGAGGAGGGCCTCGTGGAGCGGCGGGAGGAGGCCCAGCGGGCACAGCAGG CTGTGCCTGGCCCTGGGCCCATGACCCCAGAGTCTGCACTGGAGGAGCTG CTGGCCGTTCAGGTGGAGCTGGAGCCGGTTAATGCCCAAGCCAGGAAGGC CTTTTCTCGGCAGCGGGAAAAGATGGAGCGGAGGCGCAAGCCCCACCTAG ACCGCAGAGGCGCCGTCATCCAGAGCGTCCCTGGCTTCTGGGCCAATGTT ATTGCAAACCACCCCCAGATGTCAGCCCTGATCACTGACGAAGATGAAGA CATGCTGAGCTACATGGTCAGCCTGGAGGTGGAAGAAGAGAAGCATCCTG TTCATCTCTGCAAGATCATGTTGTTCTTTCGGAGTAACCCCTACTTCCAG AATAAAGTGATTACCAAGGAATATCTGGTGAACATCACAGAATACAGGGC TTCTCATTCCACTCCAATTGAGTGGTATCCGGATTATGAAGTGGAGGCCT ATCGCCGCAGACACCACAACAGCAGCCTTAACTTCTTCAACTGGTTCTCT GACCACAACTTCGCAGGATCTAACAAGATTGCTGAGATCCTATGTAAGGA CCTGTGGCGCAATCCCCTGCAATACTACAAGAGGATGAAGCCACCTGAAG AGGGAACAGAGACGTCAGGGGACTCCCAGTTGTTGAGTTGAATATGATGG AGCATCAGATTTTACCTAATACAGCAGAACTCCTAAAAAGTTACAGCCAT ATGCAGGACGGCAGTACTCAGCATGGTCTTATGCACAGGAACTAAAGGAA AAAGAGATCGAGTCACAAAAATTCAGGAAGAGGGGGTAAATGTGGATTGT ATGGAATGAAAAATAAACATTCTCAAGGA	chrY	9332464	9345278

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0002t0001g0002	0/0	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4	chrY	9332464	9345278
a0002c0001t0002g0001	0/0	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4	chrY	9332464	9345278
a0003c0003t0001g0003	0/0	1	0	0	1	0	0	TSPY4_chrY_9332464_9345278	TSPY4	chrY	9332464	9345278

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
NA18974	hp1	a0001	c0002	t0001	g0002	EAS	JPT	TSPY4_chrY_9332464_9345278	TSPY4	chrY	9332464	9345278
NA18983	hp1	a0002	c0001	t0002	g0001	EAS	JPT	TSPY4_chrY_9332464_9345278	TSPY4	chrY	9332464	9345278
NA18985	hp1	a0003	c0003	t0001	g0003	EAS	JPT	TSPY4_chrY_9332464_9345278	TSPY4	chrY	9332464	9345278

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:9337537	C C	CG CG	1	a0002 a0002	1	NA18983.hp1 NA18983.hp1	frameshift_variant	HIGH	c.31dupG c.31dupG	p.Val11fs p.Val11fs	TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/6	78/1179	32/945	11/314		INFO_REALIGN_3_PRIME	chrY	9337537
	chrY:9337537	C C	T T	1	a0003 a0003	1	NA18985.hp1 NA18985.hp1	missense_variant	MODERATE	c.28C>T c.28C>T	p.Arg10Trp p.Arg10Trp	TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/6	74/1179	28/945	10/314			chrY	9337537
	chrY:9337579	CG CG	C C	1	a0002 a0002	1	NA18983.hp1 NA18983.hp1	frameshift_variant	HIGH	c.73delG c.73delG	p.Ala25fs p.Ala25fs	TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/6	119/1179	73/945	25/314		INFO_REALIGN_3_PRIME	chrY	9337579
	chrY:9337649	A A	AG AG	1	a0002 a0002	1	NA18983.hp1 NA18983.hp1	frameshift_variant	HIGH	c.145dupG c.145dupG	p.Ala49fs p.Ala49fs	TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/6	192/1179	146/945	49/314		INFO_REALIGN_3_PRIME	chrY	9337649
	chrY:9339094	A A	AG AG	1	a0002 a0002	1	NA18983.hp1 NA18983.hp1	frameshift_variant	HIGH	c.751dupG c.751dupG	p.Ala251fs p.Ala251fs	TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	4/6	798/1179	752/945	251/314		INFO_REALIGN_3_PRIME	chrY	9339094
	chrY:9339155	C C	CA CA	1	a0002 a0002	1	NA18983.hp1 NA18983.hp1	frameshift_variant	HIGH	c.812dupA c.812dupA	p.Asn271fs p.Asn271fs	TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	4/6	859/1179	813/945	271/314		INFO_REALIGN_3_PRIME	chrY	9339155

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:9337644	A A	G G	1	a0002c0001 a0002c0001	1	NA18983.hp1 NA18983.hp1	synonymous_variant	LOW	c.135A>G c.135A>G	p.Val45Val p.Val45Val	TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/6	181/1179	135/945	45/314			chrY	9337644

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:9337480	TC TC	T T	1	a0002c0001t0002 a0002c0001t0002	1	NA18983.hp1 NA18983.hp1	5_prime_UTR_variant	MODIFIER	c.-27delC c.-27delC		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/6				27	INFO_REALIGN_3_PRIME	chrY	9337480
	chrY:9340108	A A	AT AT	1	a0002c0001t0002 a0002c0001t0002	1	NA18983.hp1 NA18983.hp1	3_prime_UTR_variant	MODIFIER	c.22dupT c.22dupT		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	6/6				23	INFO_REALIGN_3_PRIME	chrY	9340108

view	chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrY:9338082	TG TG	T T	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.504+72delG c.504+72delG		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/5					INFO_REALIGN_3_PRIME	chrY	9338082
	chrY:9338140	G G	A A	2	a0001c0002t0001g0002 a0003c0003t0001g0003 a0001c0002t0001g0002 a0003c0003t0001g0003	2	NA18974.hp1 NA18985.hp1 NA18974.hp1 NA18985.hp1	intron_variant	MODIFIER	c.504+127G>A c.504+127G>A		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/5						chrY	9338140
	chrY:9338163	A A	AG AG	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.504+152dupG c.504+152dupG		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/5					INFO_REALIGN_3_PRIME	chrY	9338163
	chrY:9338475	C C	A A	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.505-146C>A c.505-146C>A		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/5						chrY	9338475
	chrY:9338481	G G	C C	1	a0001c0002t0001g0002 a0001c0002t0001g0002	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.505-140G>C c.505-140G>C		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/5						chrY	9338481
	chrY:9338550	C C	T T	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.505-71C>T c.505-71C>T		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	1/5						chrY	9338550
	chrY:9338722	A A	G G	1	a0001c0002t0001g0002 a0001c0002t0001g0002	1	NA18974.hp1 NA18974.hp1	intron_variant	MODIFIER	c.582+24A>G c.582+24A>G		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	2/5						chrY	9338722
	chrY:9339221	A A	G G	2	a0001c0002t0001g0002 a0003c0003t0001g0003 a0001c0002t0001g0002 a0003c0003t0001g0003	2	NA18974.hp1 NA18985.hp1 NA18974.hp1 NA18985.hp1	intron_variant	MODIFIER	c.840+36A>G c.840+36A>G		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	4/5						chrY	9339221
	chrY:9339592	G G	GGT GGT	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.922+220_922+221ins others(2): Show c.922+220_922+221insTG		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	5/5					INFO_REALIGN_3_PRIME	chrY	9339592
	chrY:9339788	CA CA	C C	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.923-277delA c.923-277delA		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	5/5					INFO_REALIGN_3_PRIME	chrY	9339788
	chrY:9339873	A A	AG AG	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.923-194dupG c.923-194dupG		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	5/5					INFO_REALIGN_3_PRIME	chrY	9339873
	chrY:9339904	TG TG	T T	1	a0002c0001t0002g0001 a0002c0001t0002g0001	1	NA18983.hp1 NA18983.hp1	intron_variant	MODIFIER	c.923-160delG c.923-160delG		TSPY4	ENSG00000233803.9	transcript	ENST00000426950.6	protein_coding	5/5					INFO_REALIGN_3_PRIME	chrY	9339904