Search by Genic region
Multiple Alignments (by aa haplotype frequency)
Multiple Alignments (by aa haplotype similarity)
| Item | Value |
|---|---|
| geneid | 100287144 |
| ensemblid | ENSG00000231396.3 |
| hgncid | 44438 |
| symbol | USP17L10 |
| name | ubiquitin specific peptidase 17 like family member 10 |
| refseq_nuc | NM_001256852.1 |
| refseq_prot | NP_001243781.1 |
| ensembl_nuc | ENST00000417945.1 |
| ensembl_prot | ENSP00000403760.1 |
| mane_status | MANE Select |
| chr | chr4 |
| start | 9210657 |
| end | 9212249 |
| strand | + |
| ver | v1.2 |
| region | chr4:9210657-9212249 |
| region5000 | chr4:9205657-9217249 |
| regionname0 | USP17L10_chr4_9210657_9212249 |
| regionname5000 | USP17L10_chr4_9205657_9217249 |
| ahapid | grch38/chm13v2 | alen | total | AFR | AMR | EAS | EUR | SAS | JPT | regionname | genename | aa | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001 | 1/0 | 530 | 4 | 0 | 2 | 1 | 0 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | MEDDS others(525): Show |
chr4 | 9205657 | 9217249 |
| a0002 | 0/0 | 413 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | MEDDS others(408): Show |
chr4 | 9205657 | 9217249 |
| achapid | grch38/chm13v2 | alen | clen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | aseq | cseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001 | 1/0 | 1590 | 4 | 0 | 2 | 1 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | ATGGA others(1585): Show |
chr4 | 9205657 | 9217249 | ||
| a0002c0002 | 0/0 | 1590 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | ATGGA others(1585): Show |
chr4 | 9205657 | 9217249 |
| acthapid | grch38chm13v2 | tlen | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | tseq | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001 | 1/0 | 1593 | 4 | 0 | 2 | 1 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | ATGGA others(1588): Show |
chr4 | 9205657 | 9217249 |
| a0002c0002t0001 | 0/0 | 1593 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | ATGGA others(1588): Show |
chr4 | 9205657 | 9217249 |
| actghapid | grch38/chm13v2 | total | AFR | AMR | EAS | EUR | SAS | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a0001c0001t0001g0000 | 1/0 | 4 | 0 | 2 | 1 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | chr4 | 9205657 | 9217249 |
| a0002c0002t0001g0000 | 0/0 | 1 | 0 | 0 | 1 | 0 | 0 | USP17L10_chr4_9205657_9217249 | USP17L10 | chr4 | 9205657 | 9217249 |
| sampleid | ID haplotypeid
|
ahapid | chapid | thapid | ghapid | gpopname | popname | regionname | genename | chr | start | end |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| HG01978 | hp1 | a0001 | c0001 | t0001 | g0000 | AMR | PEL | USP17L10_chr4_9205657_9217249 | USP17L10 | chr4 | 9205657 | 9217249 |
| HG01978 | hp2 | a0001 | c0001 | t0001 | g0000 | AMR | PEL | USP17L10_chr4_9205657_9217249 | USP17L10 | chr4 | 9205657 | 9217249 |
| HG02056 | hp1 | a0001 | c0001 | t0001 | g0000 | EAS | KHV | USP17L10_chr4_9205657_9217249 | USP17L10 | chr4 | 9205657 | 9217249 |
| HG02056 | hp2 | a0002 | c0002 | t0001 | g0000 | EAS | KHV | USP17L10_chr4_9205657_9217249 | USP17L10 | chr4 | 9205657 | 9217249 |
| homoSapiens | grch38p0 | a0001 | c0001 | t0001 | g0000 | REF | REF | USP17L10_chr4_9205657_9217249 | USP17L10 | chr4 | 9205657 | 9217249 |
| view | chr:pos | ref | alt | # # of ahapid:amino-acid(protein) level |
ahapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| chr4:9211898 | C | A | 1 | a0002 | 1 | HG02056.hp2 | stop_gained | HIGH | c.1242C>A | p.Cys414* | USP17L10 | ENSG00000231396.3 | transcript | ENST00000417945.1 | protein_coding | 1/1 | 1242/1593 | 1242/1593 | 414/530 | chr4 | 9211898 |
| view | chr:pos | ref | alt | # # of chapid |
chapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|
| view | chr:pos | ref | alt | # # of thapid:transcript level |
thapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | transcript_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|
| view | chr:pos | ref | alt | # # of ghapid:genebody level |
ghapids | # # of haplotypeids |
haplotypeids | annotation | impact | hgvs_c | hgvs_p | genename | geneid | featuretype | featureid | genebody_biotype | rank | cdna cdna pos length |
cds cds pos length |
aa aa pos length |
distance | status | chr | pos |
|---|