Joint Open Genome and Omics Platform (JoGo)

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geneid	728405
ensemblid	ENSG00000231637.3
hgncid	44457
symbol	USP17L29
name	ubiquitin specific peptidase 17 like family member 29
refseq_nuc	NM_001242332.1
refseq_prot	NP_001229261.1
ensembl_nuc	ENST00000511681.1
ensembl_prot	ENSP00000422969.1
mane_status	MANE Select
chr	chr4
start	9353638
end	9355230
strand	+
ver	v1.2
region	chr4:9353638-9355230
region5000	chr4:9348638-9360230
regionname0	USP17L29_chr4_9353638_9355230
regionname5000	USP17L29_chr4_9348638_9360230

ahapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	0/0	530	57	8	10	28	2	9	16	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0002	0/0	530	18	13	3	1	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0003	0/0	530	12	3	6	3	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0004	0/0	530	5	1	0	1	1	2	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0005	0/0	312	4	0	0	3	0	1	2	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0006	0/0	530	3	3	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0007	0/0	530	3	0	0	3	0	0	3	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0008	0/0	530	2	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0009	0/0	530	2	0	1	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0010	0/0	530	2	0	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0011	0/0	530	2	0	1	1	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0012	0/0	530	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0013	0/0	194	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0014	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0015	0/0	530	1	1	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0016	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0017	0/0	530	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0018	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0019	0/0	530	1	0	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0020	0/0	530	1	1	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0021	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0022	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0023	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0024	0/0	530	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0025	0/0	530	1	1	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0026	0/0	530	1	0	0	0	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0027	0/0	530	1	1	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0028	0/0	530	1	0	0	1	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0029	0/0	530	1	0	0	1	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0030	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0031	0/0	312	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0032	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0033	0/0	530	1	0	0	1	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0034	0/0	530	1	1	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0035	0/0	530	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0036	0/0	530	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0037	0/0	530	1	0	0	1	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0038	0/0	530	1	0	0	1	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0039	0/0	530	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0040	0/0	530	1	0	0	1	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0041	0/0	530	1	0	0	0	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0042	0/0	530	1	1	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0043	0/0	312	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0044	0/0	312	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0045	0/0	530	1	1	0	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0046	0/0	312	1	0	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0047	0/0	312	1	0	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230

chapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
c0001	0/0	1593	28	5	5	13	1	4	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0002	0/0	1593	18	13	3	1	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0003	0/0	1593	12	0	1	9	1	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0004	0/0	1593	10	1	6	3	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0005	0/0	1593	8	3	1	3	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0006	0/0	1593	4	1	0	1	1	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0007	0/0	1593	4	0	0	2	0	2	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0008	0/0	1593	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0009	0/0	1593	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0010	0/0	1593	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0011	0/0	1593	2	1	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0012	0/0	1593	2	0	1	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0013	0/0	1593	2	0	1	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0014	0/0	1593	2	0	0	1	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0015	0/0	1593	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0016	0/0	1593	2	0	0	2	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0017	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0018	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0019	0/0	1593	1	0	0	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0020	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0021	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0022	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0023	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0024	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0025	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0026	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0027	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0028	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0029	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0030	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0031	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0032	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0033	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0034	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0035	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0036	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0037	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0038	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0039	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0040	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0041	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0042	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0043	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0044	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0045	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0046	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0047	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0048	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0049	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0050	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0051	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0052	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0053	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0054	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0055	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0056	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0057	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0058	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0059	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
c0060	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230

thapid	grch38 chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end

ghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
g0000	0/0	146	36	36	54	6	14	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230

achapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	0/0	1593	28	5	5	13	1	4	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0003	0/0	1593	12	0	1	9	1	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0005	0/0	1593	8	3	1	3	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0007	0/0	1593	4	0	0	2	0	2	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0015	0/0	1593	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0036	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0038	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0053	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0002c0002	0/0	1593	18	13	3	1	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0003c0004	0/0	1593	10	1	6	3	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0003c0009	0/0	1593	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0004c0006	0/0	1593	4	1	0	1	1	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0004c0027	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0005c0014	0/0	1593	2	0	0	1	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0005c0045	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0005c0046	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0006c0010	0/0	1593	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0006c0025	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0007c0016	0/0	1593	2	0	0	2	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0007c0060	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0008c0011	0/0	1593	2	1	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0009c0012	0/0	1593	2	0	1	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0010c0008	0/0	1593	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0011c0013	0/0	1593	2	0	1	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0012c0030	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0013c0029	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0014c0028	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0015c0026	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0016c0031	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0017c0032	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0018c0020	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0019c0019	0/0	1593	1	0	0	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0020c0024	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0021c0023	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0022c0021	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0023c0022	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0024c0035	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0025c0054	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0026c0052	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0027c0040	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0028c0057	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0029c0049	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0030c0051	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0031c0050	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0032c0043	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0033c0059	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0034c0034	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0035c0039	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0036c0041	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0037c0056	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0038c0042	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0039c0037	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0040c0033	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0041c0048	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0042c0058	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0043c0047	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0044c0044	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0045c0055	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0046c0018	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0047c0017	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0000	0/0	1593	28	5	5	13	1	4	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0003t0000	0/0	1593	12	0	1	9	1	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0005t0000	0/0	1593	8	3	1	3	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0007t0000	0/0	1593	4	0	0	2	0	2	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0015t0000	0/0	1593	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0036t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0038t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0001c0053t0000	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0002c0002t0000	0/0	1593	18	13	3	1	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0003c0004t0000	0/0	1593	10	1	6	3	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0003c0009t0000	0/0	1593	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0004c0006t0000	0/0	1593	4	1	0	1	1	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0004c0027t0000	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0005c0014t0000	0/0	1593	2	0	0	1	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0005c0045t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0005c0046t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0006c0010t0000	0/0	1593	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0006c0025t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0007c0016t0000	0/0	1593	2	0	0	2	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0007c0060t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0008c0011t0000	0/0	1593	2	1	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0009c0012t0000	0/0	1593	2	0	1	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0010c0008t0000	0/0	1593	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0011c0013t0000	0/0	1593	2	0	1	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0012c0030t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0013c0029t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0014c0028t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0015c0026t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0016c0031t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0017c0032t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0018c0020t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0019c0019t0000	0/0	1593	1	0	0	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0020c0024t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0021c0023t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0022c0021t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0023c0022t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0024c0035t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0025c0054t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0026c0052t0000	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0027c0040t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0028c0057t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0029c0049t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0030c0051t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0031c0050t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0032c0043t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0033c0059t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0034c0034t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0035c0039t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0036c0041t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0037c0056t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0038c0042t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0039c0037t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0040c0033t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0041c0048t0000	0/0	1593	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0042c0058t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0043c0047t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0044c0044t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0045c0055t0000	0/0	1593	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0046c0018t0000	0/0	1593	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230
a0047c0017t0000	0/0	1593	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	copy fasta	chr4	9348638	9360230

actghapid	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0000g0000	0/0	28	5	5	13	1	4	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0001c0003t0000g0000	0/0	12	0	1	9	1	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0001c0005t0000g0000	0/0	8	3	1	3	0	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0001c0007t0000g0000	0/0	4	0	0	2	0	2	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0001c0015t0000g0000	0/0	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0001c0036t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0001c0038t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0001c0053t0000g0000	0/0	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0002c0002t0000g0000	0/0	18	13	3	1	1	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0003c0004t0000g0000	0/0	10	1	6	3	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0003c0009t0000g0000	0/0	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0004c0006t0000g0000	0/0	4	1	0	1	1	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0004c0027t0000g0000	0/0	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0005c0014t0000g0000	0/0	2	0	0	1	0	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0005c0045t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0005c0046t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0006c0010t0000g0000	0/0	2	2	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0006c0025t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0007c0016t0000g0000	0/0	2	0	0	2	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0007c0060t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0008c0011t0000g0000	0/0	2	1	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0009c0012t0000g0000	0/0	2	0	1	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0010c0008t0000g0000	0/0	2	0	2	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0011c0013t0000g0000	0/0	2	0	1	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0012c0030t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0013c0029t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0014c0028t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0015c0026t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0016c0031t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0017c0032t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0018c0020t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0019c0019t0000g0000	0/0	1	0	0	0	1	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0020c0024t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0021c0023t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0022c0021t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0023c0022t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0024c0035t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0025c0054t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0026c0052t0000g0000	0/0	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0027c0040t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0028c0057t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0029c0049t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0030c0051t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0031c0050t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0032c0043t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0033c0059t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0034c0034t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0035c0039t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0036c0041t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0037c0056t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0038c0042t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0039c0037t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0040c0033t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0041c0048t0000g0000	0/0	1	0	0	0	0	1	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0042c0058t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0043c0047t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0044c0044t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0045c0055t0000g0000	0/0	1	1	0	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0046c0018t0000g0000	0/0	1	0	1	0	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
a0047c0017t0000g0000	0/0	1	0	0	1	0	0	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0002	c0002	t0000	g0000	EUR	GBR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00099	hp2	a0001	c0003	t0000	g0000	EUR	GBR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00140	hp1	a0004	c0006	t0000	g0000	EUR	GBR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00140	hp2	a0001	c0001	t0000	g0000	EUR	GBR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00408	hp1	a0001	c0003	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00408	hp2	a0001	c0001	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00423	hp1	a0001	c0001	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00423	hp2	a0035	c0039	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00438	hp1	a0001	c0005	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00438	hp2	a0002	c0002	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00558	hp1	a0001	c0001	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00558	hp2	a0017	c0032	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00609	hp1	a0039	c0037	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00609	hp2	a0001	c0005	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00621	hp1	a0001	c0001	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00621	hp2	a0003	c0004	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00642	hp1	a0014	c0028	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00642	hp2	a0001	c0015	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00673	hp1	a0001	c0003	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00673	hp2	a0001	c0005	t0000	g0000	EAS	CHS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00735	hp1	a0011	c0013	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00735	hp2	a0001	c0003	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00738	hp1	a0001	c0015	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG00738	hp2	a0016	c0031	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01069	hp1	a0009	c0012	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01069	hp2	a0018	c0020	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01106	hp1	a0001	c0001	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01106	hp2	a0002	c0002	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01169	hp1	a0030	c0051	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01169	hp2	a0001	c0036	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01243	hp1	a0021	c0023	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01243	hp2	a0008	c0011	t0000	g0000	AMR	PUR	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01258	hp1	a0036	c0041	t0000	g0000	AMR	CLM	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01258	hp2	a0003	c0004	t0000	g0000	AMR	CLM	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01346	hp1	a0043	c0047	t0000	g0000	AMR	CLM	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01346	hp2	a0032	c0043	t0000	g0000	AMR	CLM	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01433	hp1	a0002	c0002	t0000	g0000	AMR	CLM	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01433	hp2	a0013	c0029	t0000	g0000	AMR	CLM	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01516	hp1	a0009	c0012	t0000	g0000	EUR	IBS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01516	hp2	a0019	c0019	t0000	g0000	EUR	IBS	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01928	hp1	a0001	c0001	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01928	hp2	a0046	c0018	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01943	hp1	a0010	c0008	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01943	hp2	a0002	c0002	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01952	hp1	a0001	c0001	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01952	hp2	a0001	c0005	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01975	hp1	a0023	c0022	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01975	hp2	a0003	c0004	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01981	hp1	a0003	c0004	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG01981	hp2	a0003	c0004	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02004	hp1	a0022	c0021	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02004	hp2	a0003	c0004	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02056	hp1	a0047	c0017	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02056	hp2	a0044	c0044	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02074	hp1	a0003	c0004	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02074	hp2	a0012	c0030	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02080	hp1	a0005	c0014	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02080	hp2	a0004	c0006	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02129	hp1	a0001	c0001	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02129	hp2	a0001	c0001	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02132	hp1	a0031	c0050	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02132	hp2	a0001	c0007	t0000	g0000	EAS	KHV	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02257	hp1	a0002	c0002	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02257	hp2	a0001	c0001	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02273	hp1	a0010	c0008	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02273	hp2	a0003	c0004	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02280	hp1	a0027	c0040	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02280	hp2	a0002	c0002	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02293	hp1	a0001	c0001	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02293	hp2	a0001	c0001	t0000	g0000	AMR	PEL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02451	hp1	a0002	c0002	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02451	hp2	a0001	c0005	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02572	hp1	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02572	hp2	a0003	c0009	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02622	hp1	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02622	hp2	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02683	hp1	a0001	c0003	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02683	hp2	a0001	c0001	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02698	hp1	a0026	c0052	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02698	hp2	a0001	c0001	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02717	hp1	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02717	hp2	a0001	c0001	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02723	hp1	a0034	c0034	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02723	hp2	a0001	c0005	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02735	hp1	a0001	c0053	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02735	hp2	a0004	c0027	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02886	hp1	a0020	c0024	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02886	hp2	a0003	c0004	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02922	hp1	a0042	c0058	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02922	hp2	a0015	c0026	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02965	hp1	a0002	c0002	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02965	hp2	a0006	c0010	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03041	hp1	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03041	hp2	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03130	hp1	a0001	c0005	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03130	hp2	a0001	c0001	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03490	hp1	a0001	c0005	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03490	hp2	a0041	c0048	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03492	hp1	a0004	c0006	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03492	hp2	a0001	c0001	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03516	hp1	a0006	c0010	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03516	hp2	a0003	c0009	t0000	g0000	AFR	ESN	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03540	hp1	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03540	hp2	a0002	c0002	t0000	g0000	AFR	GWD	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03654	hp1	a0001	c0007	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03654	hp2	a0001	c0001	t0000	g0000	SAS	PJL	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03834	hp1	a0005	c0014	t0000	g0000	SAS	BEB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG03834	hp2	a0001	c0007	t0000	g0000	SAS	BEB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18522	hp1	a0045	c0055	t0000	g0000	AFR	YRI	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18522	hp2	a0001	c0001	t0000	g0000	AFR	YRI	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18747	hp1	a0024	c0035	t0000	g0000	EAS	CHB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18747	hp2	a0003	c0004	t0000	g0000	EAS	CHB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18906	hp1	a0002	c0002	t0000	g0000	AFR	YRI	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18906	hp2	a0006	c0025	t0000	g0000	AFR	YRI	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18944	hp1	a0001	c0007	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18944	hp2	a0001	c0001	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18952	hp1	a0038	c0042	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18952	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18962	hp1	a0001	c0038	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18962	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18964	hp1	a0001	c0001	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18964	hp2	a0040	c0033	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18966	hp1	a0001	c0003	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18966	hp2	a0011	c0013	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18972	hp1	a0033	c0059	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18972	hp2	a0007	c0016	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18979	hp1	a0028	c0057	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA18979	hp2	a0005	c0046	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19001	hp1	a0007	c0060	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19001	hp2	a0037	c0056	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19003	hp1	a0029	c0049	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19003	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19009	hp1	a0001	c0003	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19009	hp2	a0001	c0001	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19011	hp1	a0001	c0001	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19011	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19043	hp1	a0008	c0011	t0000	g0000	AFR	LWK	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19043	hp2	a0004	c0006	t0000	g0000	AFR	LWK	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19066	hp1	a0001	c0001	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19066	hp2	a0001	c0003	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19074	hp1	a0001	c0001	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19074	hp2	a0001	c0001	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19075	hp1	a0007	c0016	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
NA19075	hp2	a0005	c0045	t0000	g0000	EAS	JPT	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02559	hp1	a0025	c0054	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230
HG02559	hp2	a0001	c0001	t0000	g0000	AFR	ACB	USP17L29_chr4_9348638_9360230	USP17L29	chr4	9348638	9360230

chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr4:9353646	C C	G G	1	a0007 a0007	3	NA18972.hp2 NA19001.hp1 NA19075.hp1 NA18972.hp2 NA19001.hp1 NA19075.hp1	missense_variant	MODERATE	c.9C>G c.9C>G	p.Asp3Glu p.Asp3Glu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	9/1593	9/1593	3/530	chr4	9353646
chr4:9353662	A A	G G	45	a0001 a0002 a0003 others(42): Show a0001 a0002 a0003 a0004 a0005 a0006 a0007 a0008 a0009 a0010 a0011 a0012 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027 a0028 a0029 a0030 a0031 a0032 a0033 a0034 a0035 a0036 a0037 a0038 a0039 a0040 a0041 a0042 a0043 a0044 a0045	144	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(141): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp1 HG01106.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02056.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03834.hp1 HG03834.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18944.hp2 NA18952.hp1 NA18952.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18972.hp1 NA18972.hp2 NA18979.hp1 NA18979.hp2 NA19001.hp1 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19043.hp2 NA19066.hp1 NA19066.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2	missense_variant	MODERATE	c.25A>G c.25A>G	p.Arg9Gly p.Arg9Gly	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	25/1593	25/1593	9/530	chr4	9353662
chr4:9353664	A A	T T	5	a0007 a0028 a0033 others(2): Show a0007 a0028 a0033 a0037 a0042	7	HG02922.hp1 NA18972.hp1 NA18972.hp2 others(4): Show HG02922.hp1 NA18972.hp1 NA18972.hp2 NA18979.hp1 NA19001.hp1 NA19001.hp2 NA19075.hp1	missense_variant	MODERATE	c.27A>T c.27A>T	p.Arg9Ser p.Arg9Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	27/1593	27/1593	9/530	chr4	9353664
chr4:9353704	T T	C C	19	a0002 a0003 a0004 others(16): Show a0002 a0003 a0004 a0006 a0008 a0009 a0010 a0012 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023	56	HG00099.hp1 HG00140.hp1 HG00438.hp2 others(53): Show HG00099.hp1 HG00140.hp1 HG00438.hp2 HG00558.hp2 HG00621.hp2 HG00642.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA19043.hp1 NA19043.hp2	missense_variant	MODERATE	c.67T>C c.67T>C	p.Ser23Pro p.Ser23Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	67/1593	67/1593	23/530	chr4	9353704
chr4:9353722	T T	G G	4	a0010 a0021 a0022 others(1): Show a0010 a0021 a0022 a0023	5	HG01243.hp1 HG01943.hp1 HG01975.hp1 others(2): Show HG01243.hp1 HG01943.hp1 HG01975.hp1 HG02004.hp1 HG02273.hp1	missense_variant	MODERATE	c.85T>G c.85T>G	p.Phe29Val p.Phe29Val	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	85/1593	85/1593	29/530	chr4	9353722
chr4:9353738	G G	A A	5	a0010 a0021 a0022 others(2): Show a0010 a0021 a0022 a0023 a0024	6	HG01243.hp1 HG01943.hp1 HG01975.hp1 others(3): Show HG01243.hp1 HG01943.hp1 HG01975.hp1 HG02004.hp1 HG02273.hp1 NA18747.hp1	missense_variant	MODERATE	c.101G>A c.101G>A	p.Arg34Gln p.Arg34Gln	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	101/1593	101/1593	34/530	chr4	9353738
chr4:9353741	C C	G G	4	a0010 a0021 a0022 others(1): Show a0010 a0021 a0022 a0023	5	HG01243.hp1 HG01943.hp1 HG01975.hp1 others(2): Show HG01243.hp1 HG01943.hp1 HG01975.hp1 HG02004.hp1 HG02273.hp1	missense_variant	MODERATE	c.104C>G c.104C>G	p.Thr35Ser p.Thr35Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	104/1593	104/1593	35/530	chr4	9353741
chr4:9353756	A A	C C	1	a0045 a0045	1	NA18522.hp1 NA18522.hp1	missense_variant	MODERATE	c.119A>C c.119A>C	p.Lys40Thr p.Lys40Thr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	119/1593	119/1593	40/530	chr4	9353756
chr4:9353757	G G	C C	1	a0020 a0020	1	HG02886.hp1 HG02886.hp1	missense_variant	MODERATE	c.120G>C c.120G>C	p.Lys40Asn p.Lys40Asn	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	120/1593	120/1593	40/530	chr4	9353757
chr4:9353818	C C	G G	1	a0025 a0025	1	HG02559.hp1 HG02559.hp1	missense_variant	MODERATE	c.181C>G c.181C>G	p.Gln61Glu p.Gln61Glu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	181/1593	181/1593	61/530	chr4	9353818
chr4:9353843	C C	T T	1	a0026 a0026	1	HG02698.hp1 HG02698.hp1	missense_variant	MODERATE	c.206C>T c.206C>T	p.Pro69Leu p.Pro69Leu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	206/1593	206/1593	69/530	chr4	9353843
chr4:9353873	G G	A A	1	a0011 a0011	2	HG00735.hp1 NA18966.hp2 HG00735.hp1 NA18966.hp2	missense_variant	MODERATE	c.236G>A c.236G>A	p.Gly79Glu p.Gly79Glu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	236/1593	236/1593	79/530	chr4	9353873
chr4:9353944	C C	T T	3	a0017 a0018 a0019 a0017 a0018 a0019	3	HG00558.hp2 HG01069.hp2 HG01516.hp2 HG00558.hp2 HG01069.hp2 HG01516.hp2	missense_variant	MODERATE	c.307C>T c.307C>T	p.Pro103Ser p.Pro103Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	307/1593	307/1593	103/530	chr4	9353944
chr4:9353984	C C	T T	1	a0027 a0027	1	HG02280.hp1 HG02280.hp1	missense_variant	MODERATE	c.347C>T c.347C>T	p.Thr116Met p.Thr116Met	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	347/1593	347/1593	116/530	chr4	9353984
chr4:9354031	A A	G G	1	a0016 a0016	1	HG00738.hp2 HG00738.hp2	missense_variant	MODERATE	c.394A>G c.394A>G	p.Ile132Val p.Ile132Val	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	394/1593	394/1593	132/530	chr4	9354031
chr4:9354044	T T	C C	4	a0005 a0043 a0044 others(1): Show a0005 a0043 a0044 a0047	7	HG01346.hp1 HG02056.hp1 HG02056.hp2 others(4): Show HG01346.hp1 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG03834.hp1 NA18979.hp2 NA19075.hp2	missense_variant	MODERATE	c.407T>C c.407T>C	p.Leu136Pro p.Leu136Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	407/1593	407/1593	136/530	chr4	9354044
chr4:9354055	G G	A A	1	a0042 a0042	1	HG02922.hp1 HG02922.hp1	missense_variant	MODERATE	c.418G>A c.418G>A	p.Gly140Ser p.Gly140Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	418/1593	418/1593	140/530	chr4	9354055
chr4:9354062	T T	C C	1	a0011 a0011	2	HG00735.hp1 NA18966.hp2 HG00735.hp1 NA18966.hp2	missense_variant	MODERATE	c.425T>C c.425T>C	p.Val142Ala p.Val142Ala	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	425/1593	425/1593	142/530	chr4	9354062
chr4:9354131	T T	C C	3	a0039 a0040 a0041 a0039 a0040 a0041	3	HG00609.hp1 HG03490.hp2 NA18964.hp2 HG00609.hp1 HG03490.hp2 NA18964.hp2	missense_variant	MODERATE	c.494T>C c.494T>C	p.Leu165Pro p.Leu165Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	494/1593	494/1593	165/530	chr4	9354131
chr4:9354140	C C	T T	1	a0012 a0012	1	HG02074.hp2 HG02074.hp2	missense_variant	MODERATE	c.503C>T c.503C>T	p.Thr168Ile p.Thr168Ile	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	503/1593	503/1593	168/530	chr4	9354140
chr4:9354154	A A	G G	1	a0028 a0028	1	NA18979.hp1 NA18979.hp1	missense_variant	MODERATE	c.517A>G c.517A>G	p.Lys173Glu p.Lys173Glu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	517/1593	517/1593	173/530	chr4	9354154
chr4:9354185	T T	C C	1	a0029 a0029	1	NA19003.hp1 NA19003.hp1	missense_variant	MODERATE	c.548T>C c.548T>C	p.Val183Ala p.Val183Ala	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	548/1593	548/1593	183/530	chr4	9354185
chr4:9354211	C C	T T	1	a0039 a0039	1	HG00609.hp1 HG00609.hp1	missense_variant	MODERATE	c.574C>T c.574C>T	p.Leu192Phe p.Leu192Phe	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	574/1593	574/1593	192/530	chr4	9354211
chr4:9354220	C C	T T	1	a0013 a0013	1	HG01433.hp2 HG01433.hp2	stop_gained	HIGH	c.583C>T c.583C>T	p.Gln195* p.Gln195*	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	583/1593	583/1593	195/530	chr4	9354220
chr4:9354230	G G	C C	1	a0047 a0047	1	HG02056.hp1 HG02056.hp1	missense_variant	MODERATE	c.593G>C c.593G>C	p.Gly198Ala p.Gly198Ala	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	593/1593	593/1593	198/530	chr4	9354230
chr4:9354255	G G	C C	4	a0005 a0038 a0044 others(1): Show a0005 a0038 a0044 a0047	7	HG02056.hp1 HG02056.hp2 HG02080.hp1 others(4): Show HG02056.hp1 HG02056.hp2 HG02080.hp1 HG03834.hp1 NA18952.hp1 NA18979.hp2 NA19075.hp2	missense_variant	MODERATE	c.618G>C c.618G>C	p.Lys206Asn p.Lys206Asn	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	618/1593	618/1593	206/530	chr4	9354255
chr4:9354256	T T	C C	1	a0013 a0013	1	HG01433.hp2 HG01433.hp2	missense_variant	MODERATE	c.619T>C c.619T>C	p.Cys207Arg p.Cys207Arg	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	619/1593	619/1593	207/530	chr4	9354256
chr4:9354271	G G	C C	6	a0006 a0015 a0018 others(3): Show a0006 a0015 a0018 a0019 a0022 a0023	8	HG01069.hp2 HG01516.hp2 HG01975.hp1 others(5): Show HG01069.hp2 HG01516.hp2 HG01975.hp1 HG02004.hp1 HG02922.hp2 HG02965.hp2 HG03516.hp1 NA18906.hp2	missense_variant	MODERATE	c.634G>C c.634G>C	p.Gly212Arg p.Gly212Arg	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	634/1593	634/1593	212/530	chr4	9354271
chr4:9354296	A A	G G	1	a0015 a0015	1	HG02922.hp2 HG02922.hp2	missense_variant	MODERATE	c.659A>G c.659A>G	p.Tyr220Cys p.Tyr220Cys	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	659/1593	659/1593	220/530	chr4	9354296
chr4:9354320	A A	C C	1	a0022 a0022	1	HG02004.hp1 HG02004.hp1	missense_variant	MODERATE	c.683A>C c.683A>C	p.Gln228Pro p.Gln228Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	683/1593	683/1593	228/530	chr4	9354320
chr4:9354374	T T	A A	1	a0008 a0008	2	HG01243.hp2 NA19043.hp1 HG01243.hp2 NA19043.hp1	missense_variant	MODERATE	c.737T>A c.737T>A	p.Leu246His p.Leu246His	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	737/1593	737/1593	246/530	chr4	9354374
chr4:9354398	G G	C C	2	a0028 a0037 a0028 a0037	2	NA18979.hp1 NA19001.hp2 NA18979.hp1 NA19001.hp2	missense_variant	MODERATE	c.761G>C c.761G>C	p.Cys254Ser p.Cys254Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	761/1593	761/1593	254/530	chr4	9354398
chr4:9354434	C C	A A	1	a0044 a0044	1	HG02056.hp2 HG02056.hp2	missense_variant	MODERATE	c.797C>A c.797C>A	p.Thr266Lys p.Thr266Lys	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	797/1593	797/1593	266/530	chr4	9354434
chr4:9354566	C C	A A	45	a0001 a0002 a0003 others(42): Show a0001 a0002 a0003 a0004 a0005 a0006 a0008 a0009 a0010 a0011 a0012 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027 a0028 a0029 a0031 a0032 a0033 a0034 a0035 a0036 a0037 a0038 a0039 a0040 a0041 a0042 a0043 a0044 a0045 a0046 a0047	142	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(139): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp1 HG01106.hp2 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01928.hp1 HG01928.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03834.hp1 HG03834.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18944.hp2 NA18952.hp1 NA18952.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18972.hp1 NA18979.hp1 NA18979.hp2 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19043.hp2 NA19066.hp1 NA19066.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp2	missense_variant	MODERATE	c.929C>A c.929C>A	p.Pro310Gln p.Pro310Gln	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	929/1593	929/1593	310/530	chr4	9354566
chr4:9354566	C C	T T	1	a0030 a0030	1	HG01169.hp1 HG01169.hp1	missense_variant	MODERATE	c.929C>T c.929C>T	p.Pro310Leu p.Pro310Leu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	929/1593	929/1593	310/530	chr4	9354566
chr4:9354574	G G	T T	6	a0005 a0031 a0043 others(3): Show a0005 a0031 a0043 a0044 a0046 a0047	9	HG01346.hp1 HG01928.hp2 HG02056.hp1 others(6): Show HG01346.hp1 HG01928.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02132.hp1 HG03834.hp1 NA18979.hp2 NA19075.hp2	stop_gained	HIGH	c.937G>T c.937G>T	p.Gly313* p.Gly313*	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	937/1593	937/1593	313/530	chr4	9354574
chr4:9354578	C C	T T	6	a0005 a0031 a0043 others(3): Show a0005 a0031 a0043 a0044 a0046 a0047	9	HG01346.hp1 HG01928.hp2 HG02056.hp1 others(6): Show HG01346.hp1 HG01928.hp2 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02132.hp1 HG03834.hp1 NA18979.hp2 NA19075.hp2	missense_variant	MODERATE	c.941C>T c.941C>T	p.Pro314Leu p.Pro314Leu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	941/1593	941/1593	314/530	chr4	9354578
chr4:9354628	C C	T T	1	a0038 a0038	1	NA18952.hp1 NA18952.hp1	missense_variant	MODERATE	c.991C>T c.991C>T	p.His331Tyr p.His331Tyr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	991/1593	991/1593	331/530	chr4	9354628
chr4:9354641	A A	C C	1	a0013 a0013	1	HG01433.hp2 HG01433.hp2	missense_variant	MODERATE	c.1004A>C c.1004A>C	p.Tyr335Ser p.Tyr335Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1004/1593	1004/1593	335/530	chr4	9354641
chr4:9354641	A A	G G	4	a0003 a0006 a0012 others(1): Show a0003 a0006 a0012 a0015	17	HG00621.hp2 HG01258.hp2 HG01975.hp2 others(14): Show HG00621.hp2 HG01258.hp2 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp2 HG02074.hp1 HG02074.hp2 HG02273.hp2 HG02572.hp2 HG02886.hp2 HG02922.hp2 HG02965.hp2 HG03516.hp1 HG03516.hp2 NA18747.hp2 NA18906.hp2	missense_variant	MODERATE	c.1004A>G c.1004A>G	p.Tyr335Cys p.Tyr335Cys	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1004/1593	1004/1593	335/530	chr4	9354641
chr4:9354652	G G	A A	1	a0005 a0005	1	NA19075.hp2 NA19075.hp2	missense_variant	MODERATE	c.1015G>A c.1015G>A	p.Val339Ile p.Val339Ile	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1015/1593	1015/1593	339/530	chr4	9354652
chr4:9354675	G G	C C	1	a0042 a0042	1	HG02922.hp1 HG02922.hp1	missense_variant	MODERATE	c.1038G>C c.1038G>C	p.Trp346Cys p.Trp346Cys	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1038/1593	1038/1593	346/530	chr4	9354675
chr4:9354701	C C	T T	1	a0028 a0028	1	NA18979.hp1 NA18979.hp1	missense_variant	MODERATE	c.1064C>T c.1064C>T	p.Thr355Ile p.Thr355Ile	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1064/1593	1064/1593	355/530	chr4	9354701
chr4:9354706	T T	G G	6	a0032 a0033 a0037 others(3): Show a0032 a0033 a0037 a0038 a0042 a0045	6	HG01346.hp2 HG02922.hp1 NA18522.hp1 others(3): Show HG01346.hp2 HG02922.hp1 NA18522.hp1 NA18952.hp1 NA18972.hp1 NA19001.hp2	missense_variant	MODERATE	c.1069T>G c.1069T>G	p.Ser357Ala p.Ser357Ala	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1069/1593	1069/1593	357/530	chr4	9354706
chr4:9354712	A A	G G	2	a0014 a0016 a0014 a0016	2	HG00642.hp1 HG00738.hp2 HG00642.hp1 HG00738.hp2	missense_variant	MODERATE	c.1075A>G c.1075A>G	p.Ile359Val p.Ile359Val	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1075/1593	1075/1593	359/530	chr4	9354712
chr4:9354728	G G	C C	19	a0002 a0003 a0004 others(16): Show a0002 a0003 a0004 a0006 a0008 a0009 a0010 a0012 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023	56	HG00099.hp1 HG00140.hp1 HG00438.hp2 others(53): Show HG00099.hp1 HG00140.hp1 HG00438.hp2 HG00558.hp2 HG00621.hp2 HG00642.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA19043.hp1 NA19043.hp2	missense_variant	MODERATE	c.1091G>C c.1091G>C	p.Ser364Thr p.Ser364Thr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1091/1593	1091/1593	364/530	chr4	9354728
chr4:9354871	C C	T T	1	a0036 a0036	1	HG01258.hp1 HG01258.hp1	missense_variant	MODERATE	c.1234C>T c.1234C>T	p.His412Tyr p.His412Tyr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1234/1593	1234/1593	412/530	chr4	9354871
chr4:9354919	G G	A A	1	a0035 a0035	1	HG00423.hp2 HG00423.hp2	missense_variant	MODERATE	c.1282G>A c.1282G>A	p.Ala428Thr p.Ala428Thr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1282/1593	1282/1593	428/530	chr4	9354919
chr4:9354927	G G	C C	19	a0002 a0003 a0004 others(16): Show a0002 a0003 a0004 a0006 a0008 a0009 a0010 a0012 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023	56	HG00099.hp1 HG00140.hp1 HG00438.hp2 others(53): Show HG00099.hp1 HG00140.hp1 HG00438.hp2 HG00558.hp2 HG00621.hp2 HG00642.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA19043.hp1 NA19043.hp2	missense_variant	MODERATE	c.1290G>C c.1290G>C	p.Gln430His p.Gln430His	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1290/1593	1290/1593	430/530	chr4	9354927
chr4:9354995	G G	A A	1	a0026 a0026	1	HG02698.hp1 HG02698.hp1	missense_variant	MODERATE	c.1358G>A c.1358G>A	p.Arg453Lys p.Arg453Lys	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1358/1593	1358/1593	453/530	chr4	9354995
chr4:9355028	T T	A A	3	a0004 a0018 a0019 a0004 a0018 a0019	7	HG00140.hp1 HG01069.hp2 HG01516.hp2 others(4): Show HG00140.hp1 HG01069.hp2 HG01516.hp2 HG02080.hp2 HG02735.hp2 HG03492.hp1 NA19043.hp2	missense_variant	MODERATE	c.1391T>A c.1391T>A	p.Leu464His p.Leu464His	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1391/1593	1391/1593	464/530	chr4	9355028
chr4:9355063	A A	C C	1	a0008 a0008	2	HG01243.hp2 NA19043.hp1 HG01243.hp2 NA19043.hp1	missense_variant	MODERATE	c.1426A>C c.1426A>C	p.Lys476Gln p.Lys476Gln	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1426/1593	1426/1593	476/530	chr4	9355063
chr4:9355097	T T	A A	4	a0008 a0009 a0013 others(1): Show a0008 a0009 a0013 a0021	6	HG01069.hp1 HG01243.hp1 HG01243.hp2 others(3): Show HG01069.hp1 HG01243.hp1 HG01243.hp2 HG01433.hp2 HG01516.hp1 NA19043.hp1	missense_variant	MODERATE	c.1460T>A c.1460T>A	p.Leu487Gln p.Leu487Gln	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1460/1593	1460/1593	487/530	chr4	9355097
chr4:9355111	T T	A A	36	a0001 a0002 a0003 others(33): Show a0001 a0002 a0003 a0004 a0006 a0008 a0009 a0010 a0011 a0012 a0013 a0014 a0015 a0016 a0017 a0018 a0019 a0020 a0021 a0022 a0023 a0024 a0025 a0026 a0027 a0029 a0030 a0033 a0034 a0035 a0036 a0039 a0040 a0041 a0042 a0045	130	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(127): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp1 HG01106.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp1 HG01258.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03834.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18944.hp2 NA18952.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18972.hp1 NA19003.hp1 NA19003.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19043.hp2 NA19066.hp1 NA19066.hp2 NA19074.hp1 NA19074.hp2	missense_variant	MODERATE	c.1474T>A c.1474T>A	p.Ser492Thr p.Ser492Thr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1474/1593	1474/1593	492/530	chr4	9355111
chr4:9355118	C C	T T	2	a0014 a0016 a0014 a0016	2	HG00642.hp1 HG00738.hp2 HG00642.hp1 HG00738.hp2	missense_variant	MODERATE	c.1481C>T c.1481C>T	p.Pro494Leu p.Pro494Leu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1481/1593	1481/1593	494/530	chr4	9355118
chr4:9355133	C C	T T	1	a0034 a0034	1	HG02723.hp1 HG02723.hp1	missense_variant	MODERATE	c.1496C>T c.1496C>T	p.Ser499Phe p.Ser499Phe	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1496/1593	1496/1593	499/530	chr4	9355133
chr4:9355153	G G	T T	1	a0034 a0034	1	HG02723.hp1 HG02723.hp1	missense_variant	MODERATE	c.1516G>T c.1516G>T	p.Ala506Ser p.Ala506Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1516/1593	1516/1593	506/530	chr4	9355153
chr4:9355162	C C	G G	1	a0040 a0040	1	NA18964.hp2 NA18964.hp2	missense_variant	MODERATE	c.1525C>G c.1525C>G	p.Arg509Gly p.Arg509Gly	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1525/1593	1525/1593	509/530	chr4	9355162
chr4:9355185	A A	C C	1	a0019 a0019	1	HG01516.hp2 HG01516.hp2	missense_variant	MODERATE	c.1548A>C c.1548A>C	p.Lys516Asn p.Lys516Asn	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1548/1593	1548/1593	516/530	chr4	9355185

chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	chr	pos
chr4:9353707	C C	A A	2	a0018c0020 a0019c0019 a0018c0020 a0019c0019	2	HG01069.hp2 HG01516.hp2 HG01069.hp2 HG01516.hp2	synonymous_variant	LOW	c.70C>A c.70C>A	p.Arg24Arg p.Arg24Arg	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	70/1593	70/1593	24/530	chr4	9353707
chr4:9353712	C C	A A	5	a0007c0016 a0007c0060 a0034c0034 others(2): Show a0007c0016 a0007c0060 a0034c0034 a0037c0056 a0040c0033	6	HG02723.hp1 NA18964.hp2 NA18972.hp2 others(3): Show HG02723.hp1 NA18964.hp2 NA18972.hp2 NA19001.hp1 NA19001.hp2 NA19075.hp1	synonymous_variant	LOW	c.75C>A c.75C>A	p.Pro25Pro p.Pro25Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	75/1593	75/1593	25/530	chr4	9353712
chr4:9353757	G G	A A	1	a0001c0036 a0001c0036	1	HG01169.hp2 HG01169.hp2	synonymous_variant	LOW	c.120G>A c.120G>A	p.Lys40Lys p.Lys40Lys	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	120/1593	120/1593	40/530	chr4	9353757
chr4:9353796	T T	C C	8	a0001c0003 a0001c0007 a0001c0038 others(5): Show a0001c0003 a0001c0007 a0001c0038 a0027c0040 a0035c0039 a0036c0041 a0039c0037 a0040c0033	22	HG00099.hp2 HG00408.hp1 HG00423.hp2 others(19): Show HG00099.hp2 HG00408.hp1 HG00423.hp2 HG00609.hp1 HG00673.hp1 HG00735.hp2 HG01258.hp1 HG02132.hp2 HG02280.hp1 HG02683.hp1 HG03654.hp1 HG03834.hp2 NA18944.hp1 NA18952.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp2 NA18966.hp1 NA19003.hp2 NA19009.hp1 NA19011.hp2 NA19066.hp2	synonymous_variant	LOW	c.159T>C c.159T>C	p.Asp53Asp p.Asp53Asp	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	159/1593	159/1593	53/530	chr4	9353796
chr4:9353829	C C	G G	2	a0001c0053 a0036c0041 a0001c0053 a0036c0041	2	HG01258.hp1 HG02735.hp1 HG01258.hp1 HG02735.hp1	synonymous_variant	LOW	c.192C>G c.192C>G	p.Pro64Pro p.Pro64Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	192/1593	192/1593	64/530	chr4	9353829
chr4:9353871	G G	A A	1	a0045c0055 a0045c0055	1	NA18522.hp1 NA18522.hp1	synonymous_variant	LOW	c.234G>A c.234G>A	p.Val78Val p.Val78Val	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	234/1593	234/1593	78/530	chr4	9353871
chr4:9353943	G G	A A	1	a0028c0057 a0028c0057	1	NA18979.hp1 NA18979.hp1	synonymous_variant	LOW	c.306G>A c.306G>A	p.Pro102Pro p.Pro102Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	306/1593	306/1593	102/530	chr4	9353943
chr4:9354018	T T	G G	2	a0032c0043 a0038c0042 a0032c0043 a0038c0042	2	HG01346.hp2 NA18952.hp1 HG01346.hp2 NA18952.hp1	synonymous_variant	LOW	c.381T>G c.381T>G	p.Thr127Thr p.Thr127Thr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	381/1593	381/1593	127/530	chr4	9354018
chr4:9354037	C C	A A	2	a0003c0009 a0006c0025 a0003c0009 a0006c0025	3	HG02572.hp2 HG03516.hp2 NA18906.hp2 HG02572.hp2 HG03516.hp2 NA18906.hp2	synonymous_variant	LOW	c.400C>A c.400C>A	p.Arg134Arg p.Arg134Arg	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	400/1593	400/1593	134/530	chr4	9354037
chr4:9354120	C C	T T	1	a0026c0052 a0026c0052	1	HG02698.hp1 HG02698.hp1	synonymous_variant	LOW	c.483C>T c.483C>T	p.Ala161Ala p.Ala161Ala	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	483/1593	483/1593	161/530	chr4	9354120
chr4:9354168	T T	C C	1	a0022c0021 a0022c0021	1	HG02004.hp1 HG02004.hp1	synonymous_variant	LOW	c.531T>C c.531T>C	p.Leu177Leu p.Leu177Leu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	531/1593	531/1593	177/530	chr4	9354168
chr4:9354186	A A	G G	24	a0002c0002 a0003c0004 a0003c0009 others(21): Show a0002c0002 a0003c0004 a0003c0009 a0004c0006 a0004c0027 a0006c0010 a0006c0025 a0008c0011 a0009c0012 a0010c0008 a0012c0030 a0013c0029 a0014c0028 a0015c0026 a0016c0031 a0017c0032 a0018c0020 a0019c0019 a0020c0024 a0021c0023 a0022c0021 a0023c0022 a0029c0049 a0030c0051	58	HG00099.hp1 HG00140.hp1 HG00438.hp2 others(55): Show HG00099.hp1 HG00140.hp1 HG00438.hp2 HG00558.hp2 HG00621.hp2 HG00642.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp2 HG01169.hp1 HG01243.hp1 HG01243.hp2 HG01258.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01943.hp1 HG01943.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp2 HG02257.hp1 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02451.hp1 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02717.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03492.hp1 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA19003.hp1 NA19043.hp1 NA19043.hp2	synonymous_variant	LOW	c.549A>G c.549A>G	p.Val183Val p.Val183Val	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	549/1593	549/1593	183/530	chr4	9354186
chr4:9354312	G G	A A	1	a0028c0057 a0028c0057	1	NA18979.hp1 NA18979.hp1	synonymous_variant	LOW	c.675G>A c.675G>A	p.Leu225Leu p.Leu225Leu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	675/1593	675/1593	225/530	chr4	9354312
chr4:9354318	C C	T T	1	a0022c0021 a0022c0021	1	HG02004.hp1 HG02004.hp1	synonymous_variant	LOW	c.681C>T c.681C>T	p.Ile227Ile p.Ile227Ile	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	681/1593	681/1593	227/530	chr4	9354318
chr4:9354321	G G	A A	1	a0022c0021 a0022c0021	1	HG02004.hp1 HG02004.hp1	synonymous_variant	LOW	c.684G>A c.684G>A	p.Gln228Gln p.Gln228Gln	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	684/1593	684/1593	228/530	chr4	9354321
chr4:9354495	C C	G G	1	a0032c0043 a0032c0043	1	HG01346.hp2 HG01346.hp2	synonymous_variant	LOW	c.858C>G c.858C>G	p.Val286Val p.Val286Val	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	858/1593	858/1593	286/530	chr4	9354495
chr4:9354507	G G	A A	1	a0038c0042 a0038c0042	1	NA18952.hp1 NA18952.hp1	synonymous_variant	LOW	c.870G>A c.870G>A	p.Lys290Lys p.Lys290Lys	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	870/1593	870/1593	290/530	chr4	9354507
chr4:9354582	C C	T T	42	a0001c0001 a0001c0003 a0002c0002 others(39): Show a0001c0001 a0001c0003 a0002c0002 a0003c0004 a0003c0009 a0004c0006 a0004c0027 a0005c0014 a0005c0045 a0005c0046 a0006c0010 a0006c0025 a0008c0011 a0009c0012 a0010c0008 a0011c0013 a0012c0030 a0013c0029 a0014c0028 a0015c0026 a0016c0031 a0017c0032 a0018c0020 a0019c0019 a0020c0024 a0021c0023 a0022c0021 a0023c0022 a0024c0035 a0025c0054 a0028c0057 a0031c0050 a0032c0043 a0033c0059 a0034c0034 a0035c0039 a0037c0056 a0042c0058 a0043c0047 a0044c0044 a0045c0055 a0047c0017	116	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(113): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00673.hp1 HG00735.hp1 HG00735.hp2 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp1 HG01106.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01928.hp1 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp2 HG03834.hp1 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18944.hp2 NA18952.hp2 NA18962.hp2 NA18964.hp1 NA18966.hp1 NA18966.hp2 NA18972.hp1 NA18979.hp1 NA18979.hp2 NA19001.hp2 NA19003.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19043.hp2 NA19066.hp1 NA19066.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp2	synonymous_variant	LOW	c.945C>T c.945C>T	p.Leu315Leu p.Leu315Leu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	945/1593	945/1593	315/530	chr4	9354582
chr4:9354663	A A	G G	2	a0042c0058 a0045c0055 a0042c0058 a0045c0055	2	HG02922.hp1 NA18522.hp1 HG02922.hp1 NA18522.hp1	synonymous_variant	LOW	c.1026A>G c.1026A>G	p.Gln342Gln p.Gln342Gln	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1026/1593	1026/1593	342/530	chr4	9354663
chr4:9354672	G G	A A	3	a0032c0043 a0037c0056 a0038c0042 a0032c0043 a0037c0056 a0038c0042	3	HG01346.hp2 NA18952.hp1 NA19001.hp2 HG01346.hp2 NA18952.hp1 NA19001.hp2	synonymous_variant	LOW	c.1035G>A c.1035G>A	p.Gln345Gln p.Gln345Gln	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1035/1593	1035/1593	345/530	chr4	9354672
chr4:9354690	T T	C C	1	a0033c0059 a0033c0059	1	NA18972.hp1 NA18972.hp1	synonymous_variant	LOW	c.1053T>C c.1053T>C	p.Asp351Asp p.Asp351Asp	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1053/1593	1053/1593	351/530	chr4	9354690
chr4:9354714	C C	A A	1	a0004c0027 a0004c0027	1	HG02735.hp2 HG02735.hp2	synonymous_variant	LOW	c.1077C>A c.1077C>A	p.Ile359Ile p.Ile359Ile	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1077/1593	1077/1593	359/530	chr4	9354714
chr4:9354834	C C	A A	59	a0001c0001 a0001c0003 a0001c0005 others(56): Show a0001c0001 a0001c0003 a0001c0005 a0001c0007 a0001c0015 a0001c0036 a0001c0038 a0001c0053 a0002c0002 a0003c0004 a0003c0009 a0004c0006 a0004c0027 a0005c0014 a0005c0045 a0005c0046 a0006c0010 a0006c0025 a0007c0016 a0008c0011 a0009c0012 a0010c0008 a0011c0013 a0012c0030 a0013c0029 a0014c0028 a0015c0026 a0016c0031 a0017c0032 a0018c0020 a0019c0019 a0020c0024 a0021c0023 a0022c0021 a0023c0022 a0024c0035 a0025c0054 a0026c0052 a0027c0040 a0028c0057 a0029c0049 a0030c0051 a0031c0050 a0032c0043 a0033c0059 a0034c0034 a0035c0039 a0036c0041 a0037c0056 a0038c0042 a0039c0037 a0040c0033 a0041c0048 a0042c0058 a0043c0047 a0044c0044 a0045c0055 a0046c0018 a0047c0017	145	HG00099.hp1 HG00099.hp2 HG00140.hp1 others(142): Show HG00099.hp1 HG00099.hp2 HG00140.hp1 HG00140.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp1 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00558.hp1 HG00558.hp2 HG00609.hp1 HG00609.hp2 HG00621.hp1 HG00621.hp2 HG00642.hp1 HG00642.hp2 HG00673.hp1 HG00673.hp2 HG00735.hp1 HG00735.hp2 HG00738.hp1 HG00738.hp2 HG01069.hp1 HG01069.hp2 HG01106.hp1 HG01106.hp2 HG01169.hp1 HG01169.hp2 HG01243.hp1 HG01243.hp2 HG01258.hp1 HG01258.hp2 HG01346.hp1 HG01346.hp2 HG01433.hp1 HG01433.hp2 HG01516.hp1 HG01516.hp2 HG01928.hp1 HG01928.hp2 HG01943.hp1 HG01943.hp2 HG01952.hp1 HG01952.hp2 HG01975.hp1 HG01975.hp2 HG01981.hp1 HG01981.hp2 HG02004.hp1 HG02004.hp2 HG02056.hp1 HG02056.hp2 HG02074.hp1 HG02074.hp2 HG02080.hp1 HG02080.hp2 HG02129.hp1 HG02129.hp2 HG02132.hp1 HG02132.hp2 HG02257.hp1 HG02257.hp2 HG02273.hp1 HG02273.hp2 HG02280.hp1 HG02280.hp2 HG02293.hp1 HG02293.hp2 HG02451.hp1 HG02451.hp2 HG02559.hp1 HG02559.hp2 HG02572.hp1 HG02572.hp2 HG02622.hp1 HG02622.hp2 HG02683.hp1 HG02683.hp2 HG02698.hp1 HG02698.hp2 HG02717.hp1 HG02717.hp2 HG02723.hp1 HG02723.hp2 HG02735.hp1 HG02735.hp2 HG02886.hp1 HG02886.hp2 HG02922.hp1 HG02922.hp2 HG02965.hp1 HG02965.hp2 HG03041.hp1 HG03041.hp2 HG03130.hp1 HG03130.hp2 HG03490.hp1 HG03490.hp2 HG03492.hp1 HG03492.hp2 HG03516.hp1 HG03516.hp2 HG03540.hp1 HG03540.hp2 HG03654.hp1 HG03654.hp2 HG03834.hp1 HG03834.hp2 NA18522.hp1 NA18522.hp2 NA18747.hp1 NA18747.hp2 NA18906.hp1 NA18906.hp2 NA18944.hp1 NA18944.hp2 NA18952.hp1 NA18952.hp2 NA18962.hp1 NA18962.hp2 NA18964.hp1 NA18964.hp2 NA18966.hp1 NA18966.hp2 NA18972.hp1 NA18972.hp2 NA18979.hp1 NA18979.hp2 NA19001.hp2 NA19003.hp1 NA19003.hp2 NA19009.hp1 NA19009.hp2 NA19011.hp1 NA19011.hp2 NA19043.hp1 NA19043.hp2 NA19066.hp1 NA19066.hp2 NA19074.hp1 NA19074.hp2 NA19075.hp1 NA19075.hp2	synonymous_variant	LOW	c.1197C>A c.1197C>A	p.Thr399Thr p.Thr399Thr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1197/1593	1197/1593	399/530	chr4	9354834
chr4:9354873	C C	T T	1	a0039c0037 a0039c0037	1	HG00609.hp1 HG00609.hp1	synonymous_variant	LOW	c.1236C>T c.1236C>T	p.His412His p.His412His	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1236/1593	1236/1593	412/530	chr4	9354873
chr4:9354900	C C	T T	6	a0005c0014 a0005c0045 a0031c0050 others(3): Show a0005c0014 a0005c0045 a0031c0050 a0043c0047 a0044c0044 a0047c0017	7	HG01346.hp1 HG02056.hp1 HG02056.hp2 others(4): Show HG01346.hp1 HG02056.hp1 HG02056.hp2 HG02080.hp1 HG02132.hp1 HG03834.hp1 NA19075.hp2	synonymous_variant	LOW	c.1263C>T c.1263C>T	p.Asp421Asp p.Asp421Asp	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1263/1593	1263/1593	421/530	chr4	9354900
chr4:9354942	C C	T T	1	a0018c0020 a0018c0020	1	HG01069.hp2 HG01069.hp2	synonymous_variant	LOW	c.1305C>T c.1305C>T	p.Asp435Asp p.Asp435Asp	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1305/1593	1305/1593	435/530	chr4	9354942
chr4:9355020	C C	T T	1	a0001c0015 a0001c0015	2	HG00642.hp2 HG00738.hp1 HG00642.hp2 HG00738.hp1	synonymous_variant	LOW	c.1383C>T c.1383C>T	p.Pro461Pro p.Pro461Pro	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1383/1593	1383/1593	461/530	chr4	9355020
chr4:9355080	A A	G G	4	a0008c0011 a0009c0012 a0013c0029 others(1): Show a0008c0011 a0009c0012 a0013c0029 a0021c0023	6	HG01069.hp1 HG01243.hp1 HG01243.hp2 others(3): Show HG01069.hp1 HG01243.hp1 HG01243.hp2 HG01433.hp2 HG01516.hp1 NA19043.hp1	synonymous_variant	LOW	c.1443A>G c.1443A>G	p.Glu481Glu p.Glu481Glu	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1443/1593	1443/1593	481/530	chr4	9355080
chr4:9355116	C C	A A	4	a0001c0038 a0026c0052 a0039c0037 others(1): Show a0001c0038 a0026c0052 a0039c0037 a0040c0033	4	HG00609.hp1 HG02698.hp1 NA18962.hp1 others(1): Show HG00609.hp1 HG02698.hp1 NA18962.hp1 NA18964.hp2	synonymous_variant	LOW	c.1479C>A c.1479C>A	p.Thr493Thr p.Thr493Thr	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1479/1593	1479/1593	493/530	chr4	9355116
chr4:9355134	C C	A A	1	a0022c0021 a0022c0021	1	HG02004.hp1 HG02004.hp1	synonymous_variant	LOW	c.1497C>A c.1497C>A	p.Ser499Ser p.Ser499Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1497/1593	1497/1593	499/530	chr4	9355134
chr4:9355158	C C	T T	1	a0021c0023 a0021c0023	1	HG01243.hp1 HG01243.hp1	synonymous_variant	LOW	c.1521C>T c.1521C>T	p.Ser507Ser p.Ser507Ser	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1521/1593	1521/1593	507/530	chr4	9355158
chr4:9355167	G G	C C	1	a0021c0023 a0021c0023	1	HG01243.hp1 HG01243.hp1	synonymous_variant	LOW	c.1530G>C c.1530G>C	p.Gly510Gly p.Gly510Gly	USP17L29	ENSG00000231637.3	transcript	ENST00000511681.1	protein_coding	1/1	1530/1593	1530/1593	510/530	chr4	9355167

chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	genebody_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

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🧬 JoGo Online Haplotype Explorer USP17L29_chr4_9348638_9360230

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Translation Multiple Alignment View

🧬 Gene Summary

AAmino acid(protein) Level Haplotype Info (Total: 47)

CCoding Level Haplotype Info (Total: 60)

TTranscript Level Haplotype Info (Total: 0)

GGenebody Level Haplotype Info (Total: 1)

A C AC Level (Amino Acid + Coding) Haplotype Info (Total: 60)

A C T ACT Level (Amino Acid + Coding + Transcript) Haplotype Info (Total: 60)

A C T G ACTG Level (Amino Acid + Coding + Transcript + Genebody) Haplotype Info (Total: 60)

Haplotype Details by Sample (Haploid Level) (Total: 146)

AAmino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 59)

CCoding Level Variants (Synonymous Mutations) (Total: 32)

TTranscript Level Haplotype Variants (5'UTR+3'UTR) (Total: 0)

GGenebody Level Haplotype Variants (Intron) (Total: 0)

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Annotation (Repeats)

Annotation (SNP Array)