Joint Open Genome and Omics Platform (JoGo)

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Item	Value
geneid	170626
ensemblid	ENSG00000171402.15
hgncid	14618
symbol	XAGE3
name	X antigen family member 3
refseq_nuc	NM_133179.3
refseq_prot	NP_573440.1
ensembl_nuc	ENST00000346279.4
ensembl_prot	ENSP00000303061.3
mane_status	MANE Select
chr	chrX
start	52862528
end	52868083
strand	-
ver	v1.2
region	chrX:52862528-52868083
region5000	chrX:52857528-52873083
regionname0	XAGE3_chrX_52862528_52868083
regionname5000	XAGE3_chrX_52857528_52873083

ahapid	grch38/ chm13v2	alen	total	AFR	AMR	EAS	EUR	SAS	JPT	regionname	genename	aa	chr	start	end
a0001	1/1	111	324	78	50	151	11	32	118	XAGE3_chrX_52857528_52873083	XAGE3	MIWRG others(106): Show MIWRGRSTYRPRPRRSVPPPELIGPMLEPGDEEPQQEEPPTESRDPAPGQ EREEDQGAAETQVPDLEADLQELSQSKTGGECGNGPDDQGKILPKSEQFK MPEGGDRQPQV	chrX	52857528	52873083

achapid	grch38/ chm13v2	clen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	cseq	chr	start	end
a0001c0001	1/1	333	322	77	50	150	11	32	XAGE3_chrX_52857528_52873083	XAGE3	ATGAT others(328): Show ATGATTTGGCGAGGAAGATCAACATATAGGCCTAGGCCGAGGAGAAGTGT ACCACCTCCTGAGCTGATTGGGCCTATGCTGGAGCCCGGTGATGAGGAGC CTCAGCAAGAGGAACCACCAACTGAAAGTCGGGATCCTGCACCTGGTCAG GAGAGAGAAGAAGATCAGGGTGCAGCTGAGACTCAAGTGCCTGACCTGGA AGCTGATCTCCAGGAGCTGTCTCAGTCAAAGACTGGGGGTGAATGTGGAA ATGGTCCTGATGACCAGGGGAAGATTCTGCCAAAATCAGAACAATTTAAA ATGCCAGAAGGAGGTGACAGGCAACCACAGGTT	chrX	52857528	52873083
a0001c0002	0/0	333	1	0	0	1	0	0	XAGE3_chrX_52857528_52873083	XAGE3	ATGAT others(328): Show ATGATTTGGCGAGGAAGATCAACATATAGGCCTAGGCCGAGGAGAAGTGT ACCACCTCCTGAGCTGATTGGGCCTATGCTGGAGCCCGGTGATGAGGAGC CTCAGCAAGAGGAACCACCAACCGAAAGTCGGGATCCTGCACCTGGTCAG GAGAGAGAAGAAGATCAGGGTGCAGCTGAGACTCAAGTGCCTGACCTGGA AGCTGATCTCCAGGAGCTGTCTCAGTCAAAGACTGGGGGTGAATGTGGAA ATGGTCCTGATGACCAGGGGAAGATTCTGCCAAAATCAGAACAATTTAAA ATGCCAGAAGGAGGTGACAGGCAACCACAGGTT	chrX	52857528	52873083
a0001c0003	0/0	333	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	ATGAT others(328): Show ATGATTTGGCGAGGAAGATCAACATATAGGCCTAGGCCGAGGAGAAGTGT ACCACCTCCTGAGCTGATTGGGCCTATGCTGGAGCCCGGTGATGAGGAGC CTCAGCAAGAGGAACCACCAACTGAAAGTCGGGATCCTGCACCTGGTCAG GAGAGAGAAGAAGATCAGGGTGCAGCTGAGACTCAAGTCCCTGACCTGGA AGCTGATCTCCAGGAGCTGTCTCAGTCAAAGACTGGGGGTGAATGTGGAA ATGGTCCTGATGACCAGGGGAAGATTCTGCCAAAATCAGAACAATTTAAA ATGCCAGAAGGAGGTGACAGGCAACCACAGGTT	chrX	52857528	52873083

acthapid	grch38 chm13v2	tlen	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	tseq	chr	start	end
a0001c0001t0001	1/1	512	170	71	21	63	5	8	XAGE3_chrX_52857528_52873083	XAGE3	GAATG others(507): Show GAATGCCCTGGAGTTGTGAGGGTGTGAGGGTCGCGTTCCTGCTGTCTGGA CTTTTTCTGTCCCACTGAGACGCAGCTGTGTGAAATATGATTTGGCGAGG AAGATCAACATATAGGCCTAGGCCGAGGAGAAGTGTACCACCTCCTGAGC TGATTGGGCCTATGCTGGAGCCCGGTGATGAGGAGCCTCAGCAAGAGGAA CCACCAACTGAAAGTCGGGATCCTGCACCTGGTCAGGAGAGAGAAGAAGA TCAGGGTGCAGCTGAGACTCAAGTGCCTGACCTGGAAGCTGATCTCCAGG AGCTGTCTCAGTCAAAGACTGGGGGTGAATGTGGAAATGGTCCTGATGAC CAGGGGAAGATTCTGCCAAAATCAGAACAATTTAAAATGCCAGAAGGAGG TGACAGGCAACCACAGGTTTAAATGAAGACAAGCTGAAACAACACAAAAC TGTTTTTATCTAAGATATTTGACTTAAAAATATCGAAATAAACTTTTGCA GCTTTCTCCAAA	chrX	52857528	52873083
a0001c0001t0002	0/0	512	152	6	29	87	6	24	XAGE3_chrX_52857528_52873083	XAGE3	GAATG others(507): Show GAATGCCCTGGAGTTGTGAGGGTGTGAGGGTCGCGTTCCTGCTGTCTGGA CTTTTTCTGTCCCACTGAGACGCAGCTGTGTGAAATATGATTTGGCGAGG AAGATCAACATATAGGCCTAGGCCGAGGAGAAGTGTACCACCTCCTGAGC TGATTGGGCCTATGCTGGAGCCCGGTGATGAGGAGCCTCAGCAAGAGGAA CCACCAACTGAAAGTCGGGATCCTGCACCTGGTCAGGAGAGAGAAGAAGA TCAGGGTGCAGCTGAGACTCAAGTGCCTGACCTGGAAGCTGATCTCCAGG AGCTGTCTCAGTCAAAGACTGGGGGTGAATGTGGAAATGGTCCTGATGAC CAGGGGAAGATTCTGCCAAAATCAGAACAATTTAAAATGCCAGAAGGAGG TGACAGGCAACCACAGGTTTAAATGAAGACAAGCTGAAACAACACAAAAC TGTTTTTATCTAAGATATTTGACTTAAAAATATCAAAATAAACTTTTGCA GCTTTCTCCAAA	chrX	52857528	52873083
a0001c0002t0002	0/0	512	1	0	0	1	0	0	XAGE3_chrX_52857528_52873083	XAGE3	GAATG others(507): Show GAATGCCCTGGAGTTGTGAGGGTGTGAGGGTCGCGTTCCTGCTGTCTGGA CTTTTTCTGTCCCACTGAGACGCAGCTGTGTGAAATATGATTTGGCGAGG AAGATCAACATATAGGCCTAGGCCGAGGAGAAGTGTACCACCTCCTGAGC TGATTGGGCCTATGCTGGAGCCCGGTGATGAGGAGCCTCAGCAAGAGGAA CCACCAACCGAAAGTCGGGATCCTGCACCTGGTCAGGAGAGAGAAGAAGA TCAGGGTGCAGCTGAGACTCAAGTGCCTGACCTGGAAGCTGATCTCCAGG AGCTGTCTCAGTCAAAGACTGGGGGTGAATGTGGAAATGGTCCTGATGAC CAGGGGAAGATTCTGCCAAAATCAGAACAATTTAAAATGCCAGAAGGAGG TGACAGGCAACCACAGGTTTAAATGAAGACAAGCTGAAACAACACAAAAC TGTTTTTATCTAAGATATTTGACTTAAAAATATCAAAATAAACTTTTGCA GCTTTCTCCAAA	chrX	52857528	52873083
a0001c0003t0001	0/0	512	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	GAATG others(507): Show GAATGCCCTGGAGTTGTGAGGGTGTGAGGGTCGCGTTCCTGCTGTCTGGA CTTTTTCTGTCCCACTGAGACGCAGCTGTGTGAAATATGATTTGGCGAGG AAGATCAACATATAGGCCTAGGCCGAGGAGAAGTGTACCACCTCCTGAGC TGATTGGGCCTATGCTGGAGCCCGGTGATGAGGAGCCTCAGCAAGAGGAA CCACCAACTGAAAGTCGGGATCCTGCACCTGGTCAGGAGAGAGAAGAAGA TCAGGGTGCAGCTGAGACTCAAGTCCCTGACCTGGAAGCTGATCTCCAGG AGCTGTCTCAGTCAAAGACTGGGGGTGAATGTGGAAATGGTCCTGATGAC CAGGGGAAGATTCTGCCAAAATCAGAACAATTTAAAATGCCAGAAGGAGG TGACAGGCAACCACAGGTTTAAATGAAGACAAGCTGAAACAACACAAAAC TGTTTTTATCTAAGATATTTGACTTAAAAATATCGAAATAAACTTTTGCA GCTTTCTCCAAA	chrX	52857528	52873083

actghapid	grch38/ chm13v2	total	AFR	AMR	EAS	EUR	SAS	regionname	genename	chr	start	end
a0001c0001t0001g0002	1/0	70	34	7	22	2	4	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0003	0/0	40	0	3	35	0	2	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0004	0/0	17	17	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0005	0/1	16	3	5	3	3	1	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0006	0/0	9	4	4	0	0	1	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0007	0/0	5	4	1	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0008	0/0	5	4	1	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0009	0/0	3	0	0	3	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0016	0/0	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0018	0/0	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0020	0/0	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0021	0/0	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0001g0022	0/0	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0001	0/0	142	6	28	84	4	20	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0010	0/0	2	0	1	0	1	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0011	0/0	2	0	0	1	1	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0012	0/0	2	0	0	0	0	2	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0013	0/0	1	0	0	0	0	1	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0015	0/0	1	0	0	1	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0017	0/0	1	0	0	1	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0001t0002g0019	0/0	1	0	0	0	0	1	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0002t0002g0014	0/0	1	0	0	1	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
a0001c0003t0001g0023	0/0	1	1	0	0	0	0	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083

sampleid	ID haplotypeid	ahapid	chapid	thapid	ghapid	gpopname	popname	regionname	genename	chr	start	end
HG00099	hp1	a0001	c0001	t0001	g0002	EUR	GBR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00099	hp2	a0001	c0001	t0002	g0001	EUR	GBR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00140	hp1	a0001	c0001	t0002	g0001	EUR	GBR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00280	hp1	a0001	c0001	t0001	g0005	EUR	FIN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00323	hp1	a0001	c0001	t0001	g0002	EUR	FIN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00323	hp2	a0001	c0001	t0002	g0001	EUR	FIN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00408	hp1	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00408	hp2	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00423	hp1	a0001	c0001	t0001	g0003	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00423	hp2	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00438	hp1	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00438	hp2	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00544	hp1	a0001	c0001	t0001	g0002	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00544	hp2	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00558	hp1	a0001	c0002	t0002	g0014	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00558	hp2	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00597	hp1	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00597	hp2	a0001	c0001	t0001	g0002	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00609	hp1	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00621	hp1	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00639	hp1	a0001	c0001	t0001	g0005	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00639	hp2	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00642	hp1	a0001	c0001	t0001	g0006	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00673	hp1	a0001	c0001	t0002	g0001	EAS	CHS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00735	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00735	hp2	a0001	c0001	t0001	g0002	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00738	hp1	a0001	c0001	t0001	g0007	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00741	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG00741	hp2	a0001	c0001	t0001	g0005	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01069	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01070	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01070	hp2	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01071	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01071	hp2	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01074	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01081	hp1	a0001	c0001	t0001	g0002	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01081	hp2	a0001	c0001	t0001	g0006	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01099	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01106	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01109	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01167	hp1	a0001	c0001	t0001	g0002	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01168	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01168	hp2	a0001	c0001	t0001	g0006	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01169	hp1	a0001	c0001	t0001	g0002	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01169	hp2	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01175	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01175	hp2	a0001	c0001	t0001	g0006	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01192	hp1	a0001	c0001	t0002	g0001	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01243	hp1	a0001	c0001	t0001	g0002	AMR	PUR	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01255	hp1	a0001	c0001	t0001	g0008	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01256	hp1	a0001	c0001	t0002	g0001	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01257	hp1	a0001	c0001	t0002	g0010	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01257	hp2	a0001	c0001	t0002	g0001	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01258	hp1	a0001	c0001	t0002	g0001	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01261	hp1	a0001	c0001	t0001	g0003	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01346	hp1	a0001	c0001	t0001	g0002	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01346	hp2	a0001	c0001	t0001	g0005	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01358	hp1	a0001	c0001	t0001	g0005	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01361	hp1	a0001	c0001	t0001	g0005	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01361	hp2	a0001	c0001	t0002	g0001	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01433	hp1	a0001	c0001	t0002	g0001	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01496	hp1	a0001	c0001	t0001	g0003	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01496	hp2	a0001	c0001	t0002	g0001	AMR	CLM	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01515	hp1	a0001	c0001	t0002	g0010	EUR	IBS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01516	hp1	a0001	c0001	t0002	g0011	EUR	IBS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01516	hp2	a0001	c0001	t0001	g0005	EUR	IBS	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01884	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01884	hp2	a0001	c0001	t0001	g0007	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01928	hp1	a0001	c0001	t0002	g0001	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01934	hp1	a0001	c0001	t0001	g0002	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01943	hp1	a0001	c0001	t0002	g0001	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01952	hp1	a0001	c0001	t0002	g0001	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01978	hp1	a0001	c0001	t0002	g0001	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01978	hp2	a0001	c0001	t0002	g0001	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01981	hp1	a0001	c0001	t0002	g0001	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG01981	hp2	a0001	c0001	t0001	g0003	AMR	PEL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02015	hp1	a0001	c0001	t0001	g0003	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02027	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02040	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02055	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02056	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02071	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02074	hp1	a0001	c0001	t0001	g0005	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02080	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02080	hp2	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02083	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02129	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02132	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02135	hp1	a0001	c0001	t0001	g0002	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02145	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02155	hp1	a0001	c0001	t0002	g0001	EAS	CDX	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02155	hp2	a0001	c0001	t0002	g0001	EAS	CDX	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02257	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02257	hp2	a0001	c0001	t0001	g0008	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02258	hp1	a0001	c0001	t0001	g0021	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02280	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02280	hp2	a0001	c0001	t0001	g0004	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02451	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02451	hp2	a0001	c0001	t0001	g0008	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02523	hp1	a0001	c0001	t0002	g0001	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02523	hp2	a0001	c0001	t0001	g0002	EAS	KHV	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02572	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02602	hp1	a0001	c0001	t0001	g0003	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02615	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02615	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02622	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02622	hp2	a0001	c0001	t0001	g0006	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02630	hp1	a0001	c0001	t0001	g0016	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02630	hp2	a0001	c0001	t0001	g0004	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02647	hp1	a0001	c0001	t0001	g0004	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02683	hp1	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02683	hp2	a0001	c0001	t0001	g0002	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02698	hp1	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02717	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02723	hp1	a0001	c0001	t0002	g0001	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02723	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02735	hp1	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02738	hp1	a0001	c0001	t0001	g0003	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02809	hp1	a0001	c0001	t0001	g0008	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02809	hp2	a0001	c0001	t0001	g0006	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02818	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02818	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02886	hp1	a0001	c0001	t0001	g0006	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02886	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02895	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02896	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02896	hp2	a0001	c0001	t0001	g0018	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02922	hp1	a0001	c0001	t0001	g0004	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02922	hp2	a0001	c0001	t0002	g0001	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02965	hp1	a0001	c0001	t0001	g0004	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02970	hp1	a0001	c0001	t0001	g0007	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02970	hp2	a0001	c0001	t0001	g0002	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02976	hp1	a0001	c0001	t0001	g0002	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02976	hp2	a0001	c0001	t0001	g0004	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03017	hp1	a0001	c0001	t0001	g0002	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03041	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03041	hp2	a0001	c0001	t0001	g0006	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03098	hp1	a0001	c0001	t0001	g0004	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03130	hp1	a0001	c0001	t0002	g0001	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03139	hp1	a0001	c0001	t0001	g0002	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03195	hp1	a0001	c0001	t0001	g0005	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03195	hp2	a0001	c0001	t0001	g0002	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03209	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03225	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03239	hp1	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03239	hp2	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03453	hp1	a0001	c0001	t0001	g0005	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03453	hp2	a0001	c0001	t0001	g0002	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03486	hp1	a0001	c0001	t0001	g0002	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03486	hp2	a0001	c0001	t0001	g0002	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03490	hp1	a0001	c0001	t0001	g0002	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03491	hp1	a0001	c0001	t0002	g0012	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03491	hp2	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03492	hp1	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03516	hp1	a0001	c0001	t0001	g0004	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03516	hp2	a0001	c0001	t0001	g0004	AFR	ESN	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03540	hp1	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03540	hp2	a0001	c0001	t0001	g0002	AFR	GWD	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03579	hp1	a0001	c0001	t0001	g0004	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03654	hp1	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03688	hp1	a0001	c0001	t0002	g0012	SAS	STU	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03704	hp1	a0001	c0001	t0001	g0006	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03704	hp2	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03710	hp1	a0001	c0001	t0002	g0001	SAS	PJL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03831	hp1	a0001	c0001	t0002	g0001	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03831	hp2	a0001	c0001	t0002	g0013	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03834	hp1	a0001	c0001	t0002	g0001	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03834	hp2	a0001	c0001	t0002	g0019	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03927	hp1	a0001	c0001	t0002	g0001	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03927	hp2	a0001	c0001	t0002	g0001	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03942	hp1	a0001	c0001	t0002	g0001	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG04115	hp1	a0001	c0001	t0001	g0002	SAS	STU	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG04184	hp1	a0001	c0001	t0002	g0001	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG04184	hp2	a0001	c0001	t0002	g0001	SAS	BEB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG04199	hp1	a0001	c0001	t0002	g0001	SAS	STU	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG04204	hp1	a0001	c0001	t0002	g0001	SAS	STU	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG04228	hp1	a0001	c0001	t0001	g0005	SAS	STU	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18522	hp1	a0001	c0003	t0001	g0023	AFR	YRI	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18612	hp1	a0001	c0001	t0001	g0002	EAS	CHB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18747	hp1	a0001	c0001	t0002	g0001	EAS	CHB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18906	hp1	a0001	c0001	t0001	g0002	AFR	YRI	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18906	hp2	a0001	c0001	t0001	g0004	AFR	YRI	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18940	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18941	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18941	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18942	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18942	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18943	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18944	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18945	hp1	a0001	c0001	t0001	g0009	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18946	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18946	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18948	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18949	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18949	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18951	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18951	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18952	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18953	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18957	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18957	hp2	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18959	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18960	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18961	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18962	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18963	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18963	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18965	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18966	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18967	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18968	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18968	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18969	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18969	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18970	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18971	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18972	hp1	a0001	c0001	t0002	g0017	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18972	hp2	a0001	c0001	t0002	g0015	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18973	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18973	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18974	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18975	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18975	hp2	a0001	c0001	t0001	g0005	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18977	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18979	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18979	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18980	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18980	hp2	a0001	c0001	t0001	g0009	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18981	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18981	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18982	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18983	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18984	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18985	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18986	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18988	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18989	hp1	a0001	c0001	t0002	g0011	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18990	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18991	hp1	a0001	c0001	t0001	g0005	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18991	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18993	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18993	hp2	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18994	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18995	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19000	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19003	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19003	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19004	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19005	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19006	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19007	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19009	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19011	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19011	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19012	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19030	hp1	a0001	c0001	t0001	g0004	AFR	LWK	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19030	hp2	a0001	c0001	t0001	g0020	AFR	LWK	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19043	hp1	a0001	c0001	t0001	g0004	AFR	LWK	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19054	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19054	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19056	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19057	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19057	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19058	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19060	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19062	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19063	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19064	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19064	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19065	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19065	hp2	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19066	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19067	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19068	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19070	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19072	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19074	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19074	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19075	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19076	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19077	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19077	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19078	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19078	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19079	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19080	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19080	hp2	a0001	c0001	t0001	g0009	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19081	hp1	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19081	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19082	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19083	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19084	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19084	hp2	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19085	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19086	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19087	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19087	hp2	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19088	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19089	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19090	hp1	a0001	c0001	t0001	g0003	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19090	hp2	a0001	c0001	t0001	g0002	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19091	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19240	hp1	a0001	c0001	t0002	g0001	AFR	YRI	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA19240	hp2	a0001	c0001	t0001	g0002	AFR	YRI	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA20129	hp1	a0001	c0001	t0001	g0007	AFR	ASW	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA20129	hp2	a0001	c0001	t0001	g0005	AFR	ASW	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA20752	hp1	a0001	c0001	t0002	g0001	EUR	TSI	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA20805	hp1	a0001	c0001	t0001	g0005	EUR	TSI	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA20905	hp1	a0001	c0001	t0002	g0001	SAS	GIH	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02109	hp1	a0001	c0001	t0001	g0004	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02109	hp2	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02486	hp1	a0001	c0001	t0001	g0007	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02559	hp1	a0001	c0001	t0001	g0002	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG02559	hp2	a0001	c0001	t0001	g0004	AFR	ACB	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG03471	hp1	a0001	c0001	t0001	g0022	AFR	MSL	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG06807	hp1	a0001	c0001	t0001	g0008	AFR	USA	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
HG06807	hp2	a0001	c0001	t0001	g0004	AFR	USA	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA18955	hp1	a0001	c0001	t0002	g0001	EAS	JPT	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA20300	hp1	a0001	c0001	t0001	g0002	AFR	USA	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA20300	hp2	a0001	c0001	t0002	g0001	AFR	USA	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA21309	hp1	a0001	c0001	t0002	g0001	AFR	LWK	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
NA21309	hp2	a0001	c0001	t0001	g0004	AFR	LWK	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
homoSapiens	chm13v2	a0001	c0001	t0001	g0005	REF	REF	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083
homoSapiens	grch38p0	a0001	c0001	t0001	g0002	REF	REF	XAGE3_chrX_52857528_52873083	XAGE3	chrX	52857528	52873083

view	chr:pos	ref	alt	# # of ahapid:amino-acid(protein) level	ahapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos

view	chr:pos	ref	alt	# # of chapid	chapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:52864899	C C	G G	1	a0001c0003 a0001c0003	1	NA18522.hp1 NA18522.hp1	splice_region_variant&synonymous_variant	LOW	c.189G>C c.189G>C	p.Val63Val p.Val63Val	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/5	275/512	189/336	63/111			chrX	52864899
	chrX:52866497	A A	G G	1	a0001c0002 a0001c0002	1	HG00558.hp1 HG00558.hp1	synonymous_variant	LOW	c.123T>C c.123T>C	p.Thr41Thr p.Thr41Thr	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	3/5	209/512	123/336	41/111			chrX	52866497

view	chr:pos	ref	alt	# # of thapid:transcript level	thapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	hgvs_p	genename	geneid	featuretype	featureid	transcript_biotype	rank	cdna cdna pos length	cds cds pos length	aa aa pos length	distance	status	chr	pos
	chrX:52862555	C C	T T	2	a0001c0001t0002 a0001c0002t0002 a0001c0001t0002 a0001c0002t0002	153	HG00099.hp2 HG00140.hp1 HG00323.hp2 others(150): Show HG00099.hp2 HG00140.hp1 HG00323.hp2 HG00408.hp1 HG00408.hp2 HG00423.hp2 HG00438.hp1 HG00438.hp2 HG00544.hp2 HG00558.hp1 HG00558.hp2 HG00597.hp1 HG00609.hp1 HG00621.hp1 HG00639.hp2 HG00673.hp1 HG00735.hp1 HG00741.hp1 HG01069.hp1 HG01070.hp1 HG01070.hp2 HG01071.hp1 HG01071.hp2 HG01074.hp1 HG01099.hp1 HG01106.hp1 HG01109.hp1 HG01168.hp1 HG01169.hp2 HG01175.hp1 HG01192.hp1 HG01256.hp1 HG01257.hp1 HG01257.hp2 HG01258.hp1 HG01361.hp2 HG01433.hp1 HG01496.hp2 HG01515.hp1 HG01516.hp1 HG01928.hp1 HG01943.hp1 HG01952.hp1 HG01978.hp1 HG01978.hp2 HG01981.hp1 HG02027.hp1 HG02040.hp1 HG02056.hp1 HG02071.hp1 HG02080.hp1 HG02080.hp2 HG02083.hp1 HG02129.hp1 HG02132.hp1 HG02155.hp1 HG02155.hp2 HG02523.hp1 HG02683.hp1 HG02698.hp1 HG02723.hp1 HG02735.hp1 HG02922.hp2 HG03130.hp1 HG03239.hp1 HG03239.hp2 HG03491.hp1 HG03491.hp2 HG03492.hp1 HG03654.hp1 HG03688.hp1 HG03704.hp2 HG03710.hp1 HG03831.hp1 HG03831.hp2 HG03834.hp1 HG03834.hp2 HG03927.hp1 HG03927.hp2 HG03942.hp1 HG04184.hp1 HG04184.hp2 HG04199.hp1 HG04204.hp1 NA18747.hp1 NA18940.hp1 NA18941.hp1 NA18941.hp2 NA18942.hp2 NA18943.hp1 NA18946.hp1 NA18948.hp1 NA18949.hp1 NA18949.hp2 NA18951.hp2 NA18953.hp1 NA18955.hp1 NA18959.hp1 NA18960.hp1 NA18961.hp1 NA18962.hp1 NA18963.hp1 NA18966.hp1 NA18968.hp1 NA18970.hp1 NA18972.hp1 NA18972.hp2 NA18973.hp2 NA18974.hp1 NA18975.hp1 NA18977.hp1 NA18979.hp2 NA18980.hp1 NA18981.hp2 NA18982.hp1 NA18983.hp1 NA18985.hp1 NA18989.hp1 NA18991.hp2 NA19000.hp1 NA19003.hp2 NA19004.hp1 NA19007.hp1 NA19011.hp1 NA19054.hp1 NA19056.hp1 NA19057.hp1 NA19060.hp1 NA19062.hp1 NA19063.hp1 NA19064.hp2 NA19067.hp1 NA19068.hp1 NA19070.hp1 NA19074.hp1 NA19076.hp1 NA19077.hp2 NA19078.hp1 NA19080.hp1 NA19081.hp2 NA19082.hp1 NA19083.hp1 NA19084.hp2 NA19085.hp1 NA19086.hp1 NA19087.hp1 NA19089.hp1 NA19091.hp1 NA19240.hp1 NA20300.hp2 NA20752.hp1 NA20905.hp1 NA21309.hp1	3_prime_UTR_variant	MODIFIER	c.63G>A c.63G>A		XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	5/5				63		chrX	52862555

chr:pos	ref	alt	# # of ghapid:genebody level	ghapids	# # of haplotypeids	haplotypeids	annotation	impact	hgvs_c	genename	geneid	featuretype	featureid	genebody_biotype	rank	chr	pos
chrX:52862825	A A	G G	1	a0001c0001t0001g0018 a0001c0001t0001g0018	1	HG02896.hp2 HG02896.hp2	intron_variant	MODIFIER	c.314-185T>C c.314-185T>C	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52862825
chrX:52862950	A A	T T	3	a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021	11	HG00738.hp1 HG01255.hp1 HG01884.hp2 others(8): Show HG00738.hp1 HG01255.hp1 HG01884.hp2 HG02257.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02809.hp1 HG02970.hp1 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.314-310T>A c.314-310T>A	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52862950
chrX:52863373	A A	G G	3	a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021	11	HG00738.hp1 HG01255.hp1 HG01884.hp2 others(8): Show HG00738.hp1 HG01255.hp1 HG01884.hp2 HG02257.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02809.hp1 HG02970.hp1 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.314-733T>C c.314-733T>C	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52863373
chrX:52863406	A A	G G	1	a0001c0001t0002g0017 a0001c0001t0002g0017	1	NA18972.hp1 NA18972.hp1	intron_variant	MODIFIER	c.314-766T>C c.314-766T>C	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52863406
chrX:52863817	A A	G G	1	a0001c0001t0001g0020 a0001c0001t0001g0020	1	NA19030.hp2 NA19030.hp2	intron_variant	MODIFIER	c.313+958T>C c.313+958T>C	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52863817
chrX:52863862	T T	C C	1	a0001c0001t0001g0009 a0001c0001t0001g0009	3	NA18945.hp1 NA18980.hp2 NA19080.hp2 NA18945.hp1 NA18980.hp2 NA19080.hp2	intron_variant	MODIFIER	c.313+913A>G c.313+913A>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52863862
chrX:52864089	T T	C C	7	a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 others(4): Show a0001c0001t0001g0005 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0003t0001g0023	31	HG00280.hp1 HG00639.hp1 HG00738.hp1 others(28): Show HG00280.hp1 HG00639.hp1 HG00738.hp1 HG00741.hp2 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01516.hp2 HG01884.hp2 HG02074.hp1 HG02257.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02809.hp1 HG02970.hp1 HG03195.hp1 HG03453.hp1 HG03471.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18945.hp1 NA18975.hp2 NA18980.hp2 NA18991.hp1 NA19080.hp2 NA20129.hp1 NA20129.hp2 NA20805.hp1	intron_variant	MODIFIER	c.313+686A>G c.313+686A>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52864089
chrX:52864643	T T	C C	3	a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021	11	HG00738.hp1 HG01255.hp1 HG01884.hp2 others(8): Show HG00738.hp1 HG01255.hp1 HG01884.hp2 HG02257.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02809.hp1 HG02970.hp1 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.313+132A>G c.313+132A>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52864643
chrX:52864648	G G	T T	1	a0001c0001t0001g0016 a0001c0001t0001g0016	1	HG02630.hp1 HG02630.hp1	intron_variant	MODIFIER	c.313+127C>A c.313+127C>A	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	4/4	chrX	52864648
chrX:52865253	A A	T T	1	a0001c0001t0001g0021 a0001c0001t0001g0021	1	HG02258.hp1 HG02258.hp1	intron_variant	MODIFIER	c.188-353T>A c.188-353T>A	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	3/4	chrX	52865253
chrX:52865328	A A	C C	1	a0001c0001t0002g0015 a0001c0001t0002g0015	1	NA18972.hp2 NA18972.hp2	intron_variant	MODIFIER	c.188-428T>G c.188-428T>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	3/4	chrX	52865328
chrX:52865357	A A	G G	3	a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0021	11	HG00738.hp1 HG01255.hp1 HG01884.hp2 others(8): Show HG00738.hp1 HG01255.hp1 HG01884.hp2 HG02257.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02809.hp1 HG02970.hp1 HG06807.hp1 NA20129.hp1	intron_variant	MODIFIER	c.188-457T>C c.188-457T>C	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	3/4	chrX	52865357
chrX:52865748	T T	C C	1	a0001c0001t0002g0019 a0001c0001t0002g0019	1	HG03834.hp2 HG03834.hp2	intron_variant	MODIFIER	c.187+685A>G c.187+685A>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	3/4	chrX	52865748
chrX:52866086	T T	C C	1	a0001c0001t0002g0012 a0001c0001t0002g0012	2	HG03491.hp1 HG03688.hp1 HG03491.hp1 HG03688.hp1	intron_variant	MODIFIER	c.187+347A>G c.187+347A>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	3/4	chrX	52866086
chrX:52866550	G G	GGT GGT	4	a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0020 others(1): Show a0001c0001t0001g0004 a0001c0001t0001g0006 a0001c0001t0001g0020 a0001c0001t0002g0011	29	HG00642.hp1 HG01081.hp2 HG01168.hp2 others(26): Show HG00642.hp1 HG01081.hp2 HG01168.hp2 HG01175.hp2 HG01516.hp1 HG02109.hp1 HG02280.hp2 HG02559.hp2 HG02622.hp2 HG02630.hp2 HG02647.hp1 HG02809.hp2 HG02886.hp1 HG02922.hp1 HG02965.hp1 HG02976.hp2 HG03041.hp2 HG03098.hp1 HG03516.hp1 HG03516.hp2 HG03579.hp1 HG03704.hp1 HG06807.hp2 NA18906.hp2 NA18989.hp1 NA19030.hp1 NA19030.hp2 NA19043.hp1 NA21309.hp2	intron_variant	MODIFIER	c.82-14_82-13dupAC c.82-14_82-13dupAC	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	2/4	chrX	52866550
chrX:52866596	C C	T T	1	a0001c0001t0002g0010 a0001c0001t0002g0010	2	HG01257.hp1 HG01515.hp1 HG01257.hp1 HG01515.hp1	intron_variant	MODIFIER	c.82-58G>A c.82-58G>A	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	2/4	chrX	52866596
chrX:52866818	T T	A A	3	a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0003t0001g0023 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0003t0001g0023	19	HG00280.hp1 HG00639.hp1 HG00741.hp2 others(16): Show HG00280.hp1 HG00639.hp1 HG00741.hp2 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01516.hp2 HG02074.hp1 HG03195.hp1 HG03453.hp1 HG04228.hp1 NA18522.hp1 NA18945.hp1 NA18975.hp2 NA18980.hp2 NA18991.hp1 NA19080.hp2 NA20129.hp2 NA20805.hp1	intron_variant	MODIFIER	c.81+235A>T c.81+235A>T	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	2/4	chrX	52866818
chrX:52867250	T T	C C	1	a0001c0001t0001g0022 a0001c0001t0001g0022	1	HG03471.hp1 HG03471.hp1	intron_variant	MODIFIER	c.-8-109A>G c.-8-109A>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	1/4	chrX	52867250
chrX:52867346	G G	A A	3	a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0003t0001g0023 a0001c0001t0001g0005 a0001c0001t0001g0009 a0001c0003t0001g0023	19	HG00280.hp1 HG00639.hp1 HG00741.hp2 others(16): Show HG00280.hp1 HG00639.hp1 HG00741.hp2 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01516.hp2 HG02074.hp1 HG03195.hp1 HG03453.hp1 HG04228.hp1 NA18522.hp1 NA18945.hp1 NA18975.hp2 NA18980.hp2 NA18991.hp1 NA19080.hp2 NA20129.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-8-205C>T c.-8-205C>T	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	1/4	chrX	52867346
chrX:52867384	G G	C C	1	a0001c0001t0001g0003 a0001c0001t0001g0003	40	HG00423.hp1 HG01261.hp1 HG01496.hp1 others(37): Show HG00423.hp1 HG01261.hp1 HG01496.hp1 HG01981.hp2 HG02015.hp1 HG02602.hp1 HG02738.hp1 NA18946.hp2 NA18951.hp1 NA18952.hp1 NA18957.hp1 NA18963.hp2 NA18965.hp1 NA18967.hp1 NA18968.hp2 NA18969.hp2 NA18971.hp1 NA18973.hp1 NA18979.hp1 NA18988.hp1 NA18990.hp1 NA18993.hp1 NA18995.hp1 NA19003.hp1 NA19011.hp2 NA19012.hp1 NA19054.hp2 NA19057.hp2 NA19064.hp1 NA19065.hp1 NA19072.hp1 NA19074.hp2 NA19075.hp1 NA19077.hp1 NA19078.hp2 NA19079.hp1 NA19084.hp1 NA19087.hp2 NA19088.hp1 NA19090.hp1	intron_variant	MODIFIER	c.-8-243C>G c.-8-243C>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	1/4	chrX	52867384
chrX:52867497	C C	G G	1	a0001c0001t0002g0013 a0001c0001t0002g0013	1	HG03831.hp2 HG03831.hp2	intron_variant	MODIFIER	c.-8-356G>C c.-8-356G>C	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	1/4	chrX	52867497
chrX:52867805	C C	T T	1	a0001c0001t0001g0007 a0001c0001t0001g0007	5	HG00738.hp1 HG01884.hp2 HG02486.hp1 others(2): Show HG00738.hp1 HG01884.hp2 HG02486.hp1 HG02970.hp1 NA20129.hp1	intron_variant	MODIFIER	c.-9+201G>A c.-9+201G>A	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	1/4	chrX	52867805
chrX:52867918	T T	C C	9	a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 others(6): Show a0001c0001t0001g0005 a0001c0001t0001g0006 a0001c0001t0001g0007 a0001c0001t0001g0008 a0001c0001t0001g0009 a0001c0001t0001g0020 a0001c0001t0001g0021 a0001c0001t0001g0022 a0001c0003t0001g0023	41	HG00280.hp1 HG00639.hp1 HG00642.hp1 others(38): Show HG00280.hp1 HG00639.hp1 HG00642.hp1 HG00738.hp1 HG00741.hp2 HG01081.hp2 HG01168.hp2 HG01175.hp2 HG01255.hp1 HG01346.hp2 HG01358.hp1 HG01361.hp1 HG01516.hp2 HG01884.hp2 HG02074.hp1 HG02257.hp2 HG02258.hp1 HG02451.hp2 HG02486.hp1 HG02622.hp2 HG02809.hp1 HG02809.hp2 HG02886.hp1 HG02970.hp1 HG03041.hp2 HG03195.hp1 HG03453.hp1 HG03471.hp1 HG03704.hp1 HG04228.hp1 HG06807.hp1 NA18522.hp1 NA18945.hp1 NA18975.hp2 NA18980.hp2 NA18991.hp1 NA19030.hp2 NA19080.hp2 NA20129.hp1 NA20129.hp2 NA20805.hp1	intron_variant	MODIFIER	c.-9+88A>G c.-9+88A>G	XAGE3	ENSG00000171402.15	transcript	ENST00000346279.4	protein_coding	1/4	chrX	52867918

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XAGE3_chrX_52857528_52873083 Genic Haplotype Structure on iGV

Translation Multiple Alignment View

Gene Summary (with MANE)

Amino acid(protein) Level Haplotype Info (Total: 1)

Coding Level Haplotype Info (Total: 3)

Transcript Level Haplotype Info (Total: 4)

Genebody Level Haplotype Info (Total: 23)

Haplotype Details by Sample (Haploid Level) (Total: 324)

Amino acid(protein) Level Haplotype Related Variants (Effect to Protein Coding Variants) (Total: 0)

Coding Level Variants (On coding region but no effect to protein coding variants: Synonymous Mutations) (Total: 2)

Transcript Level Haplotype Variants (Exon) (Total: 1)

Genebody Level Haplotype Variants (Intron) (Total: 23)

Annotation (Repeats)

Annotation (SNP Array)