Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
FAM118A 207 70 41 26 0 0 0.802 0.271 0.159 0.101 0.000 0.000 chr22 45304934 45346955
FAM118B 172 55 70 40 0 0 0.667 0.213 0.271 0.155 0.000 0.000 chr11 126206782 126267968
FAM120AOS 210 80 47 25 0 0 0.814 0.310 0.182 0.097 0.000 0.000 chr9 93438332 93458581
FAM120A 158 52 71 37 0 0 0.612 0.202 0.275 0.143 0.000 0.000 chr9 93446685 93571112
FAM120B 144 36 90 52 0 0 0.558 0.140 0.349 0.202 0.000 0.000 chr6 170301758 170412067
FAM120C 31 9 203 81 0 0 0.120 0.035 0.787 0.314 0.000 0.000 chrX 54063324 54188254
FAM124A 202 70 42 29 0 0 0.783 0.271 0.163 0.112 0.000 0.000 chr13 51217398 51289239
FAM124B 220 80 33 21 0 0 0.853 0.310 0.128 0.081 0.000 0.000 chr2 224373698 224407107
FAM131A 223 79 31 23 2 2 0.864 0.306 0.120 0.089 0.008 0.008 chr3 184332600 184351275
FAM131B 233 86 23 17 0 0 0.903 0.333 0.089 0.066 0.000 0.000 chr7 143348400 143367713
FAM131C 187 53 62 44 0 0 0.725 0.205 0.240 0.171 0.000 0.000 chr1 16052769 16078651
FAM133A 83 23 170 78 0 0 0.322 0.089 0.659 0.302 0.000 0.000 chrX 93669206 93717265
FAM133B 163 56 85 43 1 0 0.632 0.217 0.329 0.167 0.004 0.000 chr7 92555758 92595390
FAM135A 133 34 88 50 0 0 0.516 0.132 0.341 0.194 0.000 0.000 chr6 70408508 70566174
FAM135B 105 19 79 42 0 0 0.407 0.074 0.306 0.163 0.000 0.000 chr8 138125023 138502261
FAM136A 219 79 34 21 1 1 0.849 0.306 0.132 0.081 0.004 0.004 chr2 70290976 70307067
FAM13A 103 27 73 44 0 0 0.399 0.105 0.283 0.171 0.000 0.000 chr4 88720960 89062185
FAM13B 160 39 82 54 0 0 0.620 0.151 0.318 0.209 0.000 0.000 chr5 137932960 138038079
FAM13C 101 24 107 54 0 0 0.391 0.093 0.415 0.209 0.000 0.000 chr10 59241133 59367549
FAM149A 194 66 48 26 0 0 0.752 0.256 0.186 0.101 0.000 0.000 chr4 186099704 186180337
FAM149B1 118 41 121 55 0 0 0.457 0.159 0.469 0.213 0.000 0.000 chr10 73163119 73249504
FAM151A 223 80 31 22 1 0 0.864 0.310 0.120 0.085 0.004 0.000 chr1 54604181 54628525
FAM151B 177 54 66 42 0 0 0.686 0.209 0.256 0.163 0.000 0.000 chr5 80483100 80547563
FAM153A 17 3 139 58 0 0 0.066 0.012 0.539 0.225 0.000 0.000 chr5 177718364 177787899
FAM156A 43 6 143 48 3 0 0.167 0.023 0.554 0.186 0.012 0.000 chrX 52942254 52963518
FAM156B 129 41 89 51 29 3 0.500 0.159 0.345 0.198 0.112 0.012 chrX 52892330 52913560
FAM161A 199 69 50 28 0 0 0.771 0.267 0.194 0.109 0.000 0.000 chr2 61819848 61859060
FAM161B 220 79 37 25 0 0 0.853 0.306 0.143 0.097 0.000 0.000 chr14 73927276 73955094
FAM162A 210 76 38 21 0 0 0.814 0.295 0.147 0.081 0.000 0.000 chr3 122379182 122417334
FAM162B 236 93 21 11 0 0 0.915 0.360 0.081 0.043 0.000 0.000 chr6 116747197 116770719
FAM163A 112 22 105 65 0 0 0.434 0.085 0.407 0.252 0.000 0.000 chr1 179738291 179821198
FAM163B 190 51 51 38 0 0 0.736 0.198 0.198 0.147 0.000 0.000 chr9 133572081 133614389
FAM166A 209 65 45 38 1 0 0.810 0.252 0.174 0.147 0.004 0.000 chr9 137238599 137252751
FAM166B 217 76 40 28 0 0 0.841 0.295 0.155 0.109 0.000 0.000 chr9 35556831 35568878
FAM166C 205 74 46 27 1 0 0.795 0.287 0.178 0.105 0.004 0.000 chr2 26557587 26584524
FAM167A 186 51 52 38 0 0 0.721 0.198 0.202 0.147 0.000 0.000 chr8 11416476 11471753
FAM167B 188 57 64 42 0 0 0.729 0.221 0.248 0.163 0.000 0.000 chr1 32242222 32253856
FAM168A 89 17 121 68 0 0 0.345 0.066 0.469 0.264 0.000 0.000 chr11 73395487 73603112
FAM168B 129 22 109 68 0 0 0.500 0.085 0.422 0.264 0.000 0.000 chr2 131042876 131098460
FAM169A 153 33 80 56 0 0 0.593 0.128 0.310 0.217 0.000 0.000 chr5 74772574 74871387
FAM170A 217 76 40 28 0 0 0.841 0.295 0.155 0.109 0.000 0.000 chr5 119624558 119640822
FAM170B 194 69 59 33 1 0 0.752 0.267 0.229 0.128 0.004 0.000 chr10 49126154 49139021
FAM171A1 151 44 71 43 0 0 0.585 0.171 0.275 0.167 0.000 0.000 chr10 15206643 15376289
FAM171A2 207 73 47 29 0 0 0.802 0.283 0.182 0.112 0.000 0.000 chr17 44348215 44368853
FAM171B 165 35 85 65 0 0 0.640 0.136 0.329 0.252 0.000 0.000 chr2 186689060 186770959
FAM172A 62 14 125 66 0 0 0.240 0.054 0.484 0.256 0.000 0.000 chr5 93612725 94116663
FAM174A 148 41 89 52 0 0 0.574 0.159 0.345 0.202 0.000 0.000 chr5 100530374 100591741
FAM174B 196 68 44 22 0 0 0.760 0.264 0.171 0.085 0.000 0.000 chr15 92612448 92660775
FAM174C 126 16 112 75 0 0 0.488 0.062 0.434 0.291 0.000 0.000 chr19 1270530 1284228
FAM177A1 184 55 69 46 0 0 0.713 0.213 0.267 0.178 0.000 0.000 chr14 35041272 35088378