Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
FOLH1 186 63 62 36 0 0 0.721 0.244 0.240 0.140 0.000 0.000 chr11 49140092 49213602
FOLR1 205 67 46 33 1 1 0.795 0.260 0.178 0.128 0.004 0.004 chr11 72187140 72201299
FOLR2 191 60 63 41 0 0 0.740 0.233 0.244 0.159 0.000 0.000 chr11 72211794 72226950
FOLR3 191 61 63 42 2 0 0.740 0.236 0.244 0.163 0.008 0.000 chr11 72130725 72144892
FOSB 216 74 38 28 1 1 0.837 0.287 0.147 0.109 0.004 0.004 chr19 45462996 45480179
FOSL1 218 81 38 22 0 0 0.845 0.314 0.147 0.085 0.000 0.000 chr11 65887049 65905388
FOSL2 181 59 60 35 0 0 0.702 0.229 0.233 0.136 0.000 0.000 chr2 28387858 28422317
FOS 222 85 32 17 1 0 0.860 0.329 0.124 0.066 0.004 0.000 chr14 75273828 75287230
FOXA1 196 63 62 42 0 0 0.760 0.244 0.240 0.163 0.000 0.000 chr14 37584552 37600249
FOXA2 186 58 68 43 0 0 0.721 0.225 0.264 0.167 0.000 0.000 chr20 22575998 22589572
FOXA3 221 79 32 23 0 0 0.857 0.306 0.124 0.089 0.000 0.000 chr19 45859326 45878797
FOXB1 222 83 35 21 0 0 0.860 0.322 0.136 0.081 0.000 0.000 chr15 59999311 60012444
FOXB2 199 64 50 33 0 0 0.771 0.248 0.194 0.128 0.000 0.000 chr9 77014655 77025953
FOXC1 213 73 42 31 2 1 0.826 0.283 0.163 0.120 0.008 0.004 chr6 1604915 1618897
FOXC2 229 84 26 18 2 2 0.888 0.326 0.101 0.070 0.008 0.008 chr16 86561829 86574728
FOXD1 206 71 48 30 2 2 0.798 0.275 0.186 0.116 0.008 0.008 chr5 73441266 73453777
FOXD2 207 74 47 27 0 0 0.802 0.287 0.182 0.105 0.000 0.000 chr1 47433044 47445691
FOXD3 229 84 21 16 1 0 0.888 0.326 0.081 0.062 0.004 0.000 chr1 63317567 63330128
FOXD4L1 162 34 74 53 1 0 0.628 0.132 0.287 0.205 0.004 0.000 chr2 113493665 113506150
FOXD4L3 87 30 28 20 143 55 0.337 0.116 0.109 0.078 0.554 0.213 chr9 68297867 68310084
FOXD4L4 103 40 36 14 118 50 0.399 0.155 0.140 0.054 0.457 0.194 chr9 65732146 65743396
FOXD4L5 40 7 111 39 7 0 0.155 0.027 0.430 0.151 0.027 0.000 chr9 65277101 65290209
FOXD4L6 162 54 85 47 6 1 0.628 0.209 0.329 0.182 0.023 0.004 chr9 41121435 41133681
FOXD4 225 86 27 15 2 1 0.872 0.333 0.105 0.058 0.008 0.004 chr9 111231 123417
FOXE1 163 47 93 56 0 0 0.632 0.182 0.360 0.217 0.000 0.000 chr9 97848226 97861717
FOXE3 214 73 41 29 0 0 0.829 0.283 0.159 0.112 0.000 0.000 chr1 47411285 47423052
FOXF1 217 76 40 28 0 0 0.841 0.295 0.155 0.109 0.000 0.000 chr16 86505527 86520422
FOXF2 224 80 29 20 0 0 0.868 0.310 0.112 0.078 0.000 0.000 chr6 1384576 1400603
FOXG1 210 73 43 27 2 2 0.814 0.283 0.167 0.105 0.008 0.008 chr14 28761787 28775277
FOXH1 192 68 63 34 0 0 0.744 0.264 0.244 0.132 0.000 0.000 chr8 144468412 144480849
FOXI1 205 74 51 31 0 0 0.795 0.287 0.198 0.120 0.000 0.000 chr5 170100897 170114734
FOXI2 216 76 40 27 0 0 0.837 0.295 0.155 0.105 0.000 0.000 chr10 127732185 127746183
FOXI3 206 70 50 34 0 0 0.798 0.271 0.194 0.132 0.000 0.000 chr2 88441787 88457693
FOXJ1 189 59 68 45 0 0 0.733 0.229 0.264 0.174 0.000 0.000 chr17 76131333 76146245
FOXJ2 186 51 59 43 0 0 0.721 0.198 0.229 0.167 0.000 0.000 chr12 8027716 8060517
FOXJ3 165 54 65 37 0 0 0.640 0.209 0.252 0.143 0.000 0.000 chr1 42171548 42340235
FOXK1 146 29 76 57 0 0 0.566 0.112 0.295 0.221 0.000 0.000 chr7 4677295 4776442
FOXK2 153 27 67 46 0 0 0.593 0.105 0.260 0.178 0.000 0.000 chr17 82514732 82609602
FOXL1 231 87 25 17 2 1 0.895 0.337 0.097 0.066 0.008 0.004 chr16 86573549 86588478
FOXL2NB 197 69 59 35 1 0 0.764 0.267 0.229 0.136 0.004 0.000 chr3 138942217 138958990
FOXL2 198 65 58 39 1 0 0.767 0.252 0.225 0.151 0.004 0.000 chr3 138939224 138952137
FOXL3 201 58 47 37 1 1 0.779 0.225 0.182 0.143 0.004 0.004 chr7 285170 296488
FOXM1 218 78 36 23 0 0 0.845 0.302 0.140 0.089 0.000 0.000 chr12 2852680 2882174
FOXN1 177 54 69 42 0 0 0.686 0.209 0.267 0.163 0.000 0.000 chr17 28501348 28543900
FOXN2 171 55 74 44 0 0 0.663 0.213 0.287 0.171 0.000 0.000 chr2 48309682 48384295
FOXN3 114 28 77 43 0 0 0.442 0.109 0.298 0.167 0.000 0.000 chr14 89151177 89422233
FOXN4 183 53 62 42 0 0 0.709 0.205 0.240 0.163 0.000 0.000 chr12 109272978 109314284
FOXO1 196 71 51 29 0 0 0.760 0.275 0.198 0.112 0.000 0.000 chr13 40550667 40671641
FOXO3B 227 83 29 20 0 0 0.880 0.322 0.112 0.078 0.000 0.000 chr17 18662629 18687314
FOXO3 138 34 101 65 0 0 0.535 0.132 0.391 0.252 0.000 0.000 chr6 108555917 108689774