Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view ALDH6A1 200 69 51 32 0 0 0.775 0.267 0.198 0.124 0.000 0.000 chr14 74051847 74089453
view ALDH7A1 189 63 48 28 1 1 0.733 0.244 0.186 0.109 0.004 0.004 chr5 126536841 126600219
view ALDH8A1 184 65 64 32 0 0 0.713 0.252 0.248 0.124 0.000 0.000 chr6 134912393 134955101
view ALDH9A1 165 38 73 51 0 0 0.640 0.147 0.283 0.198 0.000 0.000 chr1 165657216 165703562
view ALDOA 184 58 71 44 0 0 0.713 0.225 0.275 0.171 0.000 0.000 chr16 30060760 30075414
view ALDOB 208 71 45 31 0 0 0.806 0.275 0.174 0.120 0.000 0.000 chr9 101415560 101440774
view ALDOC 175 62 80 41 0 0 0.678 0.240 0.310 0.159 0.000 0.000 chr17 28568120 28581895
view ALG10B 225 83 31 20 0 0 0.872 0.322 0.120 0.078 0.000 0.000 chr12 38311774 38334721
view ALG10 165 47 91 57 0 0 0.640 0.182 0.353 0.221 0.000 0.000 chr12 34017496 34033302
view ALG11 180 61 70 39 0 0 0.698 0.236 0.271 0.151 0.000 0.000 chr13 52007398 52038600
view ALG12 173 50 76 47 0 0 0.671 0.194 0.295 0.182 0.000 0.000 chr22 49895229 49923438
view ALG13 30 0 218 98 0 0 0.116 0.000 0.845 0.380 0.000 0.000 chrX 111676170 111765649
view ALG14 193 67 53 31 0 0 0.748 0.260 0.205 0.120 0.000 0.000 chr1 94969405 95077951
view ALG1L2 130 61 98 30 2 1 0.504 0.236 0.380 0.116 0.008 0.004 chr3 130076831 130103390
view ALG1 221 75 30 26 0 0 0.857 0.291 0.116 0.101 0.000 0.000 chr16 5066843 5092379
view ALG2 187 61 68 41 0 0 0.725 0.236 0.264 0.159 0.000 0.000 chr9 99211425 99226942
view ALG3 169 50 86 53 0 0 0.655 0.194 0.333 0.205 0.000 0.000 chr3 184237301 184253962
view ALG5 137 30 106 64 0 0 0.531 0.116 0.411 0.248 0.000 0.000 chr13 36944738 37004340
view ALG6 193 73 50 23 0 0 0.748 0.283 0.194 0.089 0.000 0.000 chr1 63362627 63443553
view ALG8 200 72 48 26 0 0 0.775 0.279 0.186 0.101 0.000 0.000 chr11 78095946 78144626
view ALG9 156 45 94 55 0 0 0.605 0.174 0.364 0.213 0.000 0.000 chr11 111777195 111876581
view ALKAL1 197 66 52 35 0 0 0.764 0.256 0.202 0.136 0.000 0.000 chr8 52529037 52570430
view ALKAL2 207 67 48 35 0 0 0.802 0.260 0.186 0.136 0.000 0.000 chr2 274558 293091
view ALKBH1 179 62 68 40 0 0 0.694 0.240 0.264 0.155 0.000 0.000 chr14 77667404 77713023
view ALKBH2 234 90 22 13 0 0 0.907 0.349 0.085 0.050 0.000 0.000 chr12 109083189 109098472
view ALKBH3 187 57 57 38 0 0 0.725 0.221 0.221 0.147 0.000 0.000 chr11 43875831 43925274
view ALKBH4 201 64 50 35 0 0 0.779 0.248 0.194 0.136 0.000 0.000 chr7 102451238 102469863
view ALKBH5 208 77 44 23 0 0 0.806 0.298 0.171 0.089 0.000 0.000 chr17 18178828 18214954
view ALKBH6 195 61 60 43 0 0 0.756 0.236 0.233 0.167 0.000 0.000 chr19 36004120 36019213
view ALKBH7 185 58 68 42 0 0 0.717 0.225 0.264 0.163 0.000 0.000 chr19 6367794 6380250
view ALKBH8 199 79 51 23 0 0 0.771 0.306 0.198 0.089 0.000 0.000 chr11 107497727 107570735
view ALK 40 1 123 66 0 0 0.155 0.004 0.477 0.256 0.000 0.000 chr2 29187774 29926586
view ALLC 136 34 82 46 0 0 0.527 0.132 0.318 0.178 0.000 0.000 chr2 3653200 3707671
view ALMS1 123 29 108 62 0 0 0.477 0.112 0.419 0.240 0.000 0.000 chr2 73380836 73614916
view ALOX12B 230 83 23 17 1 1 0.891 0.322 0.089 0.066 0.004 0.004 chr17 8067636 8092716
view ALOX12 201 67 52 35 0 0 0.779 0.260 0.202 0.136 0.000 0.000 chr17 6991049 7015754
view ALOX15B 234 85 22 18 1 1 0.907 0.329 0.085 0.070 0.004 0.004 chr17 8034059 8054134
view ALOX15 235 85 18 15 1 1 0.911 0.329 0.070 0.058 0.004 0.004 chr17 4625919 4646678
view ALOX5AP 210 74 38 22 0 0 0.814 0.287 0.147 0.085 0.000 0.000 chr13 30730543 30769426
view ALOX5 172 61 65 34 0 0 0.667 0.236 0.252 0.132 0.000 0.000 chr10 45369216 45451117
view ALOXE3 210 65 37 29 0 0 0.814 0.252 0.143 0.112 0.000 0.000 chr17 8090900 8123514
view ALPG 216 80 40 23 1 1 0.837 0.310 0.155 0.089 0.004 0.004 chr2 232401844 232415714
view ALPI 222 83 35 21 0 0 0.860 0.322 0.136 0.081 0.000 0.000 chr2 232451153 232465753
view ALPK1 152 43 64 37 0 0 0.589 0.167 0.248 0.143 0.000 0.000 chr4 112292369 112447621
view ALPK2 159 49 56 34 0 0 0.616 0.190 0.217 0.132 0.000 0.000 chr18 58476247 58634091
view ALPK3 169 51 63 38 0 0 0.655 0.198 0.244 0.147 0.000 0.000 chr15 84812356 84878479
view ALPL 184 58 55 35 0 0 0.713 0.225 0.213 0.136 0.000 0.000 chr1 21504423 21583410
view ALPP 204 76 52 28 1 0 0.791 0.295 0.202 0.109 0.004 0.000 chr2 232373751 232387889
view ALS2CL 194 60 52 36 0 0 0.752 0.233 0.202 0.140 0.000 0.000 chr3 46663995 46698679
view ALS2 176 63 65 33 0 0 0.682 0.244 0.252 0.128 0.000 0.000 chr2 201695267 201785933