Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view GNGT2 219 76 36 27 2 1 0.849 0.295 0.140 0.105 0.008 0.004 chr17 49201237 49215574
view GNL1 198 71 55 29 0 0 0.767 0.275 0.213 0.112 0.000 0.000 chr6 30536381 30561489
view GNL2 187 60 62 41 0 0 0.725 0.233 0.240 0.159 0.000 0.000 chr1 37561816 37600937
view GNL3L 77 22 171 74 0 0 0.298 0.085 0.663 0.287 0.000 0.000 chrX 54525219 54572289
view GNL3 196 63 60 41 0 0 0.760 0.244 0.233 0.159 0.000 0.000 chr3 52681032 52699497
view GNLY 198 65 55 37 0 0 0.767 0.252 0.213 0.143 0.000 0.000 chr2 85689358 85703852
view GNMT 193 63 62 40 0 0 0.748 0.244 0.240 0.155 0.000 0.000 chr6 42955754 42968880
view GNPAT 179 61 67 38 0 0 0.694 0.236 0.260 0.147 0.000 0.000 chr1 231236212 231282973
view GNPDA1 211 73 37 25 0 0 0.818 0.283 0.143 0.097 0.000 0.000 chr5 141995671 142018027
view GNPDA2 205 74 49 30 0 0 0.795 0.287 0.190 0.116 0.000 0.000 chr4 44696795 44731556
view GNPNAT1 194 70 59 32 0 0 0.752 0.271 0.229 0.124 0.000 0.000 chr14 52770193 52796607
view GNPTAB 195 76 57 25 0 0 0.756 0.295 0.221 0.097 0.000 0.000 chr12 101740499 101835959
view GNPTG 188 50 57 44 0 0 0.729 0.194 0.221 0.171 0.000 0.000 chr16 1346931 1369113
view GNRH1 198 73 60 32 0 0 0.767 0.283 0.233 0.124 0.000 0.000 chr8 25414258 25429261
view GNRH2 222 80 34 23 1 1 0.860 0.310 0.132 0.089 0.004 0.004 chr20 3038622 3050747
view GNRHR 193 60 57 38 0 0 0.748 0.233 0.221 0.147 0.000 0.000 chr4 67732118 67759388
view GNS 175 47 66 45 0 0 0.678 0.182 0.256 0.174 0.000 0.000 chr12 64708449 64764406
view GOLGA1 186 66 59 30 0 0 0.721 0.256 0.229 0.116 0.000 0.000 chr9 124873275 124946083
view GOLGA2 193 78 59 24 0 0 0.748 0.302 0.229 0.093 0.000 0.000 chr9 128250829 128281007
view GOLGA3 153 46 93 51 0 0 0.593 0.178 0.360 0.198 0.000 0.000 chr12 132763914 132833869
view GOLGA4 135 38 94 54 0 0 0.523 0.147 0.364 0.209 0.000 0.000 chr3 37238271 37371879
view GOLGA5 194 69 57 31 0 0 0.752 0.267 0.221 0.120 0.000 0.000 chr14 92789305 92844947
view GOLGA6A 68 16 133 54 0 0 0.264 0.062 0.516 0.209 0.000 0.000 chr15 74064857 74087550
view GOLGA6B 166 54 82 43 0 0 0.643 0.209 0.318 0.167 0.000 0.000 chr15 72649697 72674599
view GOLGA6C 99 47 58 32 92 20 0.384 0.182 0.225 0.124 0.357 0.078 chr15 75253334 75278455
view GOLGA6D 116 39 99 58 23 0 0.450 0.151 0.384 0.225 0.089 0.000 chr15 75277835 75300530
view GOLGA6L10 150 41 89 49 0 0 0.581 0.159 0.345 0.190 0.000 0.000 chr15 82334993 82354475
view GOLGA6L1 102 14 114 55 0 0 0.395 0.054 0.442 0.213 0.000 0.000 chr15 23122066 23141822
view GOLGA6L22 112 53 104 40 13 1 0.434 0.205 0.403 0.155 0.050 0.004 chr15 22453903 22474226
view GOLGA6L24 100 46 25 13 128 41 0.388 0.178 0.097 0.050 0.496 0.159 chr15 28342851 28363084
view GOLGA6L25 49 4 79 24 2 0 0.190 0.016 0.306 0.093 0.008 0.000 chr15 28548568 28568779
view GOLGA6L26 91 39 57 35 94 18 0.353 0.151 0.221 0.136 0.364 0.070 chr15 23319535 23339196
view GOLGA6L2 197 61 56 39 0 0 0.764 0.236 0.217 0.151 0.000 0.000 chr15 23434038 23452243
view GOLGA6L4 125 45 100 50 0 0 0.484 0.174 0.388 0.194 0.000 0.000 chr15 84230773 84250358
view GOLGA6L6 106 50 70 30 75 23 0.411 0.194 0.271 0.116 0.291 0.089 chr15 20526856 20546800
view GOLGA6L7 210 68 42 34 3 0 0.814 0.264 0.163 0.132 0.012 0.000 chr15 28836832 28853644
view GOLGA6L9 227 88 30 16 0 0 0.880 0.341 0.116 0.062 0.000 0.000 chr15 82424816 82444153
view GOLGA7B 167 45 74 47 0 0 0.647 0.174 0.287 0.182 0.000 0.000 chr10 97844843 97876578
view GOLGA7 174 52 78 49 0 0 0.674 0.202 0.302 0.190 0.000 0.000 chr8 41485582 41515980
view GOLGA8A 122 30 105 53 0 0 0.473 0.116 0.407 0.205 0.000 0.000 chr15 34374068 34442808
view GOLGA8B 98 28 108 50 0 0 0.380 0.109 0.419 0.194 0.000 0.000 chr15 34520095 34588651
view GOLGA8F 135 55 54 27 61 17 0.523 0.213 0.209 0.105 0.236 0.066 chr15 28373664 28397021
view GOLGA8G 50 4 97 35 4 0 0.194 0.016 0.376 0.136 0.016 0.000 chr15 28514611 28537971
view GOLGA8H 193 58 58 41 0 0 0.748 0.225 0.225 0.159 0.000 0.000 chr15 30599028 30622752
view GOLGA8J 172 55 76 45 0 0 0.667 0.213 0.295 0.174 0.000 0.000 chr15 30077955 30101690
view GOLGA8K 199 79 55 23 1 0 0.771 0.306 0.213 0.089 0.004 0.000 chr15 32384599 32408292
view GOLGA8M 220 79 27 20 2 0 0.853 0.306 0.105 0.078 0.008 0.000 chr15 28693583 28717421
view GOLGA8N 143 31 98 60 0 0 0.554 0.120 0.380 0.233 0.000 0.000 chr15 32588456 32612237
view GOLGA8O 107 29 121 55 2 0 0.415 0.112 0.469 0.213 0.008 0.000 chr15 32436914 32460634
view GOLGA8Q 63 24 146 68 5 2 0.244 0.093 0.566 0.264 0.019 0.008 chr15 30547050 30570684