Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
GOLGA8R 92 25 81 50 49 3 0.357 0.097 0.314 0.194 0.190 0.012 chr15 30395562 30419260
GOLGA8S 214 78 40 24 3 2 0.829 0.302 0.155 0.093 0.012 0.008 chr15 23349748 23373341
GOLGA8T 145 55 97 47 5 0 0.562 0.213 0.376 0.182 0.019 0.000 chr15 30130051 30153748
GOLGB1 184 61 64 35 0 0 0.713 0.236 0.248 0.136 0.000 0.000 chr3 121658201 121754741
GOLIM4 113 18 115 74 0 0 0.438 0.070 0.446 0.287 0.000 0.000 chr3 168003689 168100924
GOLM1 156 43 73 39 0 0 0.605 0.167 0.283 0.151 0.000 0.000 chr9 86021146 86104558
GOLM2 74 18 134 62 0 0 0.287 0.070 0.519 0.240 0.000 0.000 chr15 44283719 44420758
GOLPH3L 173 58 70 40 0 0 0.671 0.225 0.271 0.155 0.000 0.000 chr1 150641230 150702154
GOLPH3 189 65 55 30 0 0 0.733 0.252 0.213 0.116 0.000 0.000 chr5 32119716 32179319
GOLT1A 206 68 48 35 0 0 0.798 0.264 0.186 0.136 0.000 0.000 chr1 204193163 204218988
GOLT1B 214 79 42 25 0 0 0.829 0.306 0.163 0.097 0.000 0.000 chr12 21496789 21523408
GON4L 108 19 120 71 0 0 0.419 0.074 0.465 0.275 0.000 0.000 chr1 155744659 155862214
GON7 206 68 51 36 0 0 0.798 0.264 0.198 0.140 0.000 0.000 chr14 93197894 93212065
GOPC 190 70 62 32 0 0 0.736 0.271 0.240 0.124 0.000 0.000 chr6 117555269 117607511
GORAB 177 55 74 44 0 0 0.686 0.213 0.287 0.171 0.000 0.000 chr1 170527166 170558834
GORASP1 203 74 51 27 0 0 0.787 0.287 0.198 0.105 0.000 0.000 chr3 39091599 39112627
GORASP2 190 59 53 32 0 0 0.736 0.229 0.205 0.124 0.000 0.000 chr2 170924253 170972130
GOSR1 152 41 87 55 0 0 0.589 0.159 0.337 0.213 0.000 0.000 chr17 30472408 30532592
GOSR2 205 69 46 31 1 0 0.795 0.267 0.178 0.120 0.004 0.000 chr17 46918160 46947020
GOT1L1 216 80 41 25 0 0 0.837 0.310 0.159 0.097 0.000 0.000 chr8 37929281 37945124
GOT1 176 64 74 37 0 0 0.682 0.248 0.287 0.143 0.000 0.000 chr10 99391870 99435624
GOT2 199 70 53 30 0 0 0.771 0.271 0.205 0.116 0.000 0.000 chr16 58702131 58739316
GP1BA 211 77 41 22 1 1 0.818 0.298 0.159 0.085 0.004 0.004 chr17 4927277 4940023
GP1BB 204 62 44 34 0 0 0.791 0.240 0.171 0.132 0.000 0.000 chr22 19718539 19729771
GP2 195 60 54 39 1 0 0.756 0.233 0.209 0.151 0.004 0.000 chr16 20304574 20332513
GP5 191 69 62 32 0 0 0.740 0.267 0.240 0.124 0.000 0.000 chr3 194389821 194404266
GP6 220 73 32 27 0 0 0.853 0.283 0.124 0.105 0.000 0.000 chr19 55008705 55043264
GP9 195 64 61 39 0 0 0.756 0.248 0.236 0.151 0.000 0.000 chr3 129055779 129067406
GPA33 184 53 55 38 0 0 0.713 0.205 0.213 0.147 0.000 0.000 chr1 167047836 167095377
GPAA1 168 36 77 57 0 0 0.651 0.140 0.298 0.221 0.000 0.000 chr8 144077634 144091216
GPALPP1 173 59 69 38 0 0 0.671 0.229 0.267 0.147 0.000 0.000 chr13 44984538 45035305
GPAM 188 67 55 28 0 0 0.729 0.260 0.213 0.109 0.000 0.000 chr10 112144865 112188765
GPANK1 216 78 41 26 0 0 0.837 0.302 0.159 0.101 0.000 0.000 chr6 31656228 31669997
GPAT2 210 74 47 30 0 0 0.814 0.287 0.182 0.116 0.000 0.000 chr2 96016946 96039916
GPAT3 166 58 68 36 0 0 0.643 0.225 0.264 0.140 0.000 0.000 chr4 83531108 83610875
GPAT4 204 76 45 22 0 0 0.791 0.295 0.174 0.085 0.000 0.000 chr8 41573200 41630001
GPATCH11 216 78 38 24 0 0 0.837 0.302 0.147 0.093 0.000 0.000 chr2 37079518 37104244
GPATCH1 189 61 61 38 0 0 0.733 0.236 0.236 0.147 0.000 0.000 chr19 33076181 33135542
GPATCH2L 200 79 48 21 0 0 0.775 0.306 0.186 0.081 0.000 0.000 chr14 76146922 76219343
GPATCH2 93 11 92 57 0 0 0.360 0.043 0.357 0.221 0.000 0.000 chr1 217421992 217636090
GPATCH3 145 26 107 74 0 0 0.562 0.101 0.415 0.287 0.000 0.000 chr1 26885488 26905467
GPATCH8 162 52 77 40 0 0 0.628 0.202 0.298 0.155 0.000 0.000 chr17 44390281 44508406
GPBAR1 202 70 53 32 1 1 0.783 0.271 0.205 0.124 0.004 0.004 chr2 218256015 218268861
GPBP1L1 145 41 100 55 0 0 0.562 0.159 0.388 0.213 0.000 0.000 chr1 45622304 45691533
GPBP1 144 28 84 55 0 0 0.558 0.109 0.326 0.213 0.000 0.000 chr5 57169059 57269673
GPC1 198 51 46 41 0 0 0.767 0.198 0.178 0.159 0.000 0.000 chr2 240430663 240473076
GPC2 199 66 55 36 0 0 0.771 0.256 0.213 0.140 0.000 0.000 chr7 100164606 100182381
GPC3 13 1 203 84 0 0 0.050 0.004 0.787 0.326 0.000 0.000 chrX 133530745 133990594
GPC4 48 17 189 76 0 0 0.186 0.066 0.733 0.295 0.000 0.000 chrX 133295103 133420489
GPC5 21 0 109 48 0 0 0.081 0.000 0.422 0.186 0.000 0.000 chr13 91393621 92872237