Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
ALX1 191 70 54 26 0 0 0.740 0.271 0.209 0.101 0.000 0.000 chr12 85275220 85306784
ALX3 210 74 42 26 0 0 0.814 0.287 0.163 0.101 0.000 0.000 chr1 110054870 110075672
ALX4 193 67 49 29 0 0 0.748 0.260 0.190 0.112 0.000 0.000 chr11 44255440 44315139
ALYREF 160 41 91 57 0 0 0.620 0.159 0.353 0.221 0.000 0.000 chr17 81882835 81896586
AMACR 218 83 33 16 0 0 0.845 0.322 0.128 0.062 0.000 0.000 chr5 33981165 34013050
AMBN 239 91 17 13 1 1 0.926 0.353 0.066 0.050 0.004 0.004 chr4 70587256 70612288
AMBP 226 80 26 19 0 0 0.876 0.310 0.101 0.074 0.000 0.000 chr9 114055127 114083300
AMBRA1 79 11 142 80 0 0 0.306 0.043 0.550 0.310 0.000 0.000 chr11 46391414 46599023
AMD1 196 73 59 30 0 0 0.760 0.283 0.229 0.116 0.000 0.000 chr6 110869785 110900713
AMDHD1 201 68 46 29 0 0 0.779 0.264 0.178 0.112 0.000 0.000 chr12 95938331 95973720
AMDHD2 158 45 86 49 0 0 0.612 0.174 0.333 0.190 0.000 0.000 chr16 2515371 2536417
AMELX 88 20 167 82 0 0 0.341 0.078 0.647 0.318 0.000 0.000 chrX 11288413 11305761
AMELY 0 0 129 55 0 0 0.000 0.000 0.500 0.213 0.000 0.000 chrY 6860918 6916752
AMER1 57 10 195 91 0 0 0.221 0.039 0.756 0.353 0.000 0.000 chrX 64180117 64210708
AMER2 207 75 50 29 0 0 0.802 0.291 0.194 0.112 0.000 0.000 chr13 25156679 25177288
AMER3 179 56 71 42 0 0 0.694 0.217 0.275 0.163 0.000 0.000 chr2 130750540 130773134
AMFR 177 58 58 33 0 0 0.686 0.225 0.225 0.128 0.000 0.000 chr16 56356452 56430545
AMHR2 177 62 76 38 0 0 0.686 0.240 0.295 0.147 0.000 0.000 chr12 53418855 53436672
AMH 215 70 39 31 1 1 0.833 0.271 0.151 0.120 0.004 0.004 chr19 2244323 2257073
AMIGO1 199 69 58 35 0 0 0.771 0.267 0.225 0.136 0.000 0.000 chr1 109499178 109514727
AMIGO2 239 96 19 9 0 0 0.926 0.372 0.074 0.035 0.000 0.000 chr12 47071447 47084959
AMIGO3 166 50 89 53 2 1 0.643 0.194 0.345 0.205 0.008 0.004 chr3 49711829 49724684
AMMECR1L 166 49 86 53 0 0 0.643 0.190 0.333 0.205 0.000 0.000 chr2 127856630 127890956
AMMECR1 13 0 224 100 0 0 0.050 0.000 0.868 0.388 0.000 0.000 chrX 110189186 110323085
AMN1 215 77 37 23 0 0 0.833 0.298 0.143 0.089 0.000 0.000 chr12 31666142 31734021
AMN 225 77 30 25 0 0 0.872 0.298 0.116 0.097 0.000 0.000 chr14 102917663 102935842
AMOTL1 122 38 92 47 0 0 0.473 0.147 0.357 0.182 0.000 0.000 chr11 94763356 94881748
AMOTL2 167 38 84 63 1 0 0.647 0.147 0.326 0.244 0.004 0.000 chr3 134350347 134379447
AMOT 69 17 171 79 0 0 0.267 0.066 0.663 0.306 0.000 0.000 chrX 112769877 112845831
AMPD1 178 51 69 46 0 0 0.690 0.198 0.267 0.178 0.000 0.000 chr1 114668098 114700546
AMPD2 193 65 60 37 0 0 0.748 0.252 0.233 0.143 0.000 0.000 chr1 109614837 109637051
AMPD3 194 60 46 30 0 0 0.752 0.233 0.178 0.116 0.000 0.000 chr11 10450264 10512579
AMPH 143 36 60 36 0 0 0.554 0.140 0.233 0.140 0.000 0.000 chr7 38378704 38636373
AMTN 228 87 27 15 1 1 0.884 0.337 0.105 0.058 0.004 0.004 chr4 70513569 70537743
AMT 178 47 76 54 0 0 0.690 0.182 0.295 0.209 0.000 0.000 chr3 49411778 49427473
AMY1A 115 46 71 27 57 21 0.446 0.178 0.275 0.105 0.221 0.081 chr1 103650760 103669554
AMY1B 80 29 106 48 34 12 0.310 0.112 0.411 0.186 0.132 0.047 chr1 103682415 103701210
AMY1C 170 49 74 45 2 0 0.659 0.190 0.287 0.174 0.008 0.000 chr1 103744898 103763692
AMY2A 155 51 85 50 13 1 0.601 0.198 0.329 0.194 0.050 0.004 chr1 103612427 103630780
AMY2B 203 74 43 27 8 0 0.787 0.287 0.167 0.105 0.031 0.000 chr1 103566589 103584534
AMZ1 218 76 34 24 0 0 0.845 0.295 0.132 0.093 0.000 0.000 chr7 2683202 2724683
AMZ2 218 74 36 28 1 1 0.845 0.287 0.140 0.109 0.004 0.004 chr17 68243043 68262155
ANAPC10 167 57 74 39 0 0 0.647 0.221 0.287 0.151 0.000 0.000 chr4 144989576 145103196
ANAPC11 155 35 97 64 0 0 0.601 0.136 0.376 0.248 0.000 0.000 chr17 81886723 81905255
ANAPC13 196 65 60 38 1 1 0.760 0.252 0.233 0.147 0.004 0.004 chr3 134472706 134490985
ANAPC15 203 71 54 34 1 0 0.787 0.275 0.209 0.132 0.004 0.000 chr11 72104587 72117695
ANAPC16 175 53 77 46 0 0 0.678 0.205 0.298 0.178 0.000 0.000 chr10 72211012 72240860
ANAPC1 184 63 62 37 0 0 0.713 0.244 0.240 0.143 0.000 0.000 chr2 111762640 111889193
ANAPC2 207 66 45 33 0 0 0.802 0.256 0.174 0.128 0.000 0.000 chr9 137169784 137193560
ANAPC4 227 81 29 23 0 0 0.880 0.314 0.112 0.089 0.000 0.000 chr4 25372263 25423498