Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view IFT56 164 58 73 32 0 0 0.636 0.225 0.283 0.124 0.000 0.000 chr7 139128778 139196986
view IFT57 176 62 65 37 0 0 0.682 0.240 0.252 0.143 0.000 0.000 chr3 108155812 108227424
view IFT70A 191 63 65 40 0 0 0.740 0.244 0.252 0.155 0.000 0.000 chr2 177607999 177623742
view IFT70B 190 70 67 35 0 0 0.736 0.271 0.260 0.136 0.000 0.000 chr2 177543998 177557796
view IFT74 170 47 69 49 0 0 0.659 0.182 0.267 0.190 0.000 0.000 chr9 26951412 27071134
view IFT80 105 16 134 76 0 0 0.407 0.062 0.519 0.295 0.000 0.000 chr3 160251986 160404225
view IFT81 108 17 122 71 0 0 0.419 0.066 0.473 0.275 0.000 0.000 chr12 110119357 110223793
view IFT88 153 48 80 42 0 0 0.593 0.186 0.310 0.163 0.000 0.000 chr13 20562157 20696444
view IFTAP 178 56 74 44 0 0 0.690 0.217 0.287 0.171 0.000 0.000 chr11 36589502 36664272
view IGBP1C 183 52 67 48 0 0 0.709 0.202 0.260 0.186 0.000 0.000 chr17 58655424 58697045
view IGBP1 57 3 191 98 0 0 0.221 0.012 0.740 0.380 0.000 0.000 chrX 70128447 70171324
view IGDCC3 156 42 73 45 0 0 0.605 0.163 0.283 0.174 0.000 0.000 chr15 65322127 65383002
view IGDCC4 175 56 58 37 0 0 0.678 0.217 0.225 0.143 0.000 0.000 chr15 65376484 65427947
view IGF1R 104 17 69 40 0 0 0.403 0.066 0.267 0.155 0.000 0.000 chr15 98643539 98969530
view IGF1 179 59 58 35 0 0 0.694 0.229 0.225 0.136 0.000 0.000 chr12 102390874 102485563
view IGF2BP1 158 39 81 52 0 0 0.612 0.151 0.314 0.202 0.000 0.000 chr17 48992385 49061145
view IGF2BP2 107 17 112 64 0 0 0.415 0.066 0.434 0.248 0.000 0.000 chr3 185638130 185830042
view IGF2BP3 114 17 85 61 0 0 0.442 0.066 0.329 0.236 0.000 0.000 chr7 23305209 23475491
view IGF2R 154 45 68 42 0 0 0.597 0.174 0.264 0.163 0.000 0.000 chr6 159964082 160116504
view IGF2 193 56 57 42 0 0 0.748 0.217 0.221 0.163 0.000 0.000 chr11 2124117 2144389
view IGFALS 225 81 23 14 0 0 0.872 0.314 0.089 0.054 0.000 0.000 chr16 1785413 1798705
view IGFBP1 222 80 34 24 0 0 0.860 0.310 0.132 0.093 0.000 0.000 chr7 45883488 45898660
view IGFBP2 200 66 43 27 0 0 0.775 0.256 0.167 0.105 0.000 0.000 chr2 216628420 216669436
view IGFBP3 217 77 39 26 0 0 0.841 0.298 0.151 0.101 0.000 0.000 chr7 45907245 45926272
view IGFBP4 194 57 59 44 0 0 0.752 0.221 0.229 0.171 0.000 0.000 chr17 40438450 40462725
view IGFBP5 210 69 40 29 0 0 0.814 0.267 0.155 0.112 0.000 0.000 chr2 216667105 216700549
view IGFBP6 207 72 49 31 0 0 0.802 0.279 0.190 0.120 0.000 0.000 chr12 53092667 53107340
view IGFBP7 172 49 59 35 0 0 0.667 0.190 0.229 0.136 0.000 0.000 chr4 57025773 57115385
view IGFBPL1 223 79 32 23 0 0 0.864 0.306 0.124 0.089 0.000 0.000 chr9 38401528 38429454
view IGFL1 216 79 39 25 1 0 0.837 0.306 0.151 0.097 0.004 0.000 chr19 46224742 46236243
view IGFL2 225 89 32 15 0 0 0.872 0.345 0.124 0.058 0.000 0.000 chr19 46143238 46166289
view IGFL3 215 78 42 26 0 0 0.833 0.302 0.163 0.101 0.000 0.000 chr19 46115067 46129688
view IGFL4 226 87 30 17 1 0 0.876 0.337 0.116 0.066 0.004 0.000 chr19 46034182 46046002
view IGFLR1 202 64 52 37 0 0 0.783 0.248 0.202 0.143 0.000 0.000 chr19 35733801 35747452
view IGFN1 213 74 36 25 0 0 0.826 0.287 0.140 0.097 0.000 0.000 chr1 201185824 201233952
view IGHMBP2 186 67 62 32 0 0 0.721 0.260 0.240 0.124 0.000 0.000 chr11 68898891 68945601
view IGIP 156 42 97 59 1 0 0.605 0.163 0.376 0.229 0.004 0.000 chr5 140120937 140134392
view IGLL1 236 86 20 17 0 0 0.915 0.333 0.078 0.066 0.000 0.000 chr22 23568125 23585290
view IGLL5 150 49 70 40 16 0 0.581 0.190 0.271 0.155 0.062 0.000 chr22 22882816 22901111
view IGLON5 208 69 39 26 0 0 0.806 0.267 0.151 0.101 0.000 0.000 chr19 51306644 51335891
view IGSF10 211 73 39 27 0 0 0.818 0.283 0.151 0.105 0.000 0.000 chr3 151431203 151466061
view IGSF11 179 54 53 34 0 0 0.694 0.209 0.205 0.132 0.000 0.000 chr3 118895557 119039846
view IGSF1 102 28 155 76 0 0 0.395 0.109 0.601 0.295 0.000 0.000 chrX 131268506 131294306
view IGSF21 123 17 56 44 0 0 0.477 0.066 0.217 0.171 0.000 0.000 chr1 18102798 18383483
view IGSF22 225 84 28 17 1 1 0.872 0.326 0.109 0.066 0.004 0.004 chr11 18699312 18731188
view IGSF23 210 75 39 24 0 0 0.814 0.291 0.151 0.093 0.000 0.000 chr19 44608563 44641781
view IGSF3 131 29 89 50 0 0 0.508 0.112 0.345 0.194 0.000 0.000 chr1 116569408 116672733
view IGSF5 175 53 66 43 0 0 0.678 0.205 0.256 0.167 0.000 0.000 chr21 39740183 39807081
view IGSF6 205 76 53 29 0 0 0.795 0.295 0.205 0.112 0.000 0.000 chr16 21634550 21657608
view IGSF8 207 74 46 27 1 1 0.802 0.287 0.178 0.105 0.004 0.004 chr1 160086343 160103619