Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
INPP5D 154 34 65 47 0 0 0.597 0.132 0.252 0.182 0.000 0.000 chr2 233055342 233212903
INPP5E 190 49 61 51 0 0 0.736 0.190 0.236 0.198 0.000 0.000 chr9 136423619 136444845
INPP5F 163 46 61 40 0 0 0.632 0.178 0.236 0.155 0.000 0.000 chr10 119721050 119834147
INPP5J 210 71 38 28 0 0 0.814 0.275 0.147 0.109 0.000 0.000 chr22 31117966 31139697
INPP5K 209 69 45 34 0 0 0.810 0.267 0.174 0.132 0.000 0.000 chr17 1489577 1521612
INPPL1 168 53 85 49 0 0 0.651 0.205 0.329 0.190 0.000 0.000 chr11 72219767 72244147
INSC 134 31 79 44 0 0 0.519 0.120 0.306 0.171 0.000 0.000 chr11 15109923 15252208
INSIG1 221 87 33 16 0 0 0.857 0.337 0.128 0.062 0.000 0.000 chr7 155292878 155315235
INSIG2 219 77 30 21 0 0 0.849 0.298 0.116 0.081 0.000 0.000 chr2 118083471 118115997
INSL3 225 77 24 19 1 1 0.872 0.298 0.093 0.074 0.004 0.004 chr19 17811512 17826519
INSL4 213 74 43 30 1 0 0.826 0.287 0.167 0.116 0.004 0.000 chr9 5226419 5240304
INSL5 224 83 33 21 0 0 0.868 0.322 0.128 0.081 0.000 0.000 chr1 66792740 66806276
INSL6 191 58 60 43 0 0 0.740 0.225 0.233 0.167 0.000 0.000 chr9 5158868 5190639
INSM1 220 80 33 20 0 0 0.853 0.310 0.128 0.078 0.000 0.000 chr20 20363104 20375949
INSM2 200 74 57 31 0 0 0.775 0.287 0.221 0.120 0.000 0.000 chr14 35529164 35542054
INSRR 177 43 72 54 0 0 0.686 0.167 0.279 0.209 0.000 0.000 chr1 156835063 156864117
INSR 149 28 53 39 0 0 0.578 0.109 0.205 0.151 0.000 0.000 chr19 7107265 7299414
INSYN1 202 68 53 34 0 0 0.783 0.264 0.205 0.132 0.000 0.000 chr15 73730458 73758351
INSYN2A 141 36 100 58 0 0 0.547 0.140 0.388 0.225 0.000 0.000 chr10 127130430 127201591
INSYN2B 158 47 62 38 0 0 0.612 0.182 0.240 0.147 0.000 0.000 chr5 169856303 169985495
INS 187 53 53 38 0 0 0.725 0.205 0.205 0.147 0.000 0.000 chr11 2154779 2166209
INTS10 209 69 44 31 0 0 0.810 0.267 0.171 0.120 0.000 0.000 chr8 19812416 19857067
INTS11 176 48 68 47 0 0 0.682 0.186 0.264 0.182 0.000 0.000 chr1 1306600 1329660
INTS12 155 51 91 47 0 0 0.601 0.198 0.353 0.182 0.000 0.000 chr4 105677627 105713689
INTS13 193 61 53 35 0 0 0.748 0.236 0.205 0.136 0.000 0.000 chr12 26900181 26942981
INTS14 160 47 93 56 0 0 0.620 0.182 0.360 0.217 0.000 0.000 chr15 65573757 65616131
INTS15 196 60 51 34 0 0 0.760 0.233 0.198 0.132 0.000 0.000 chr7 6585021 6613726
INTS1 157 34 74 49 0 0 0.609 0.132 0.287 0.190 0.000 0.000 chr7 1465277 1509389
INTS2 182 67 66 35 0 0 0.705 0.260 0.256 0.136 0.000 0.000 chr17 61860367 61932982
INTS3 174 51 70 46 0 0 0.674 0.198 0.271 0.178 0.000 0.000 chr1 153723050 153779808
INTS4 180 64 61 31 0 0 0.698 0.248 0.236 0.120 0.000 0.000 chr11 77873720 77999668
INTS5 183 52 67 46 0 0 0.709 0.202 0.260 0.178 0.000 0.000 chr11 62641848 62658302
INTS6L 57 19 184 78 0 0 0.221 0.074 0.713 0.302 0.000 0.000 chrX 135515660 135587510
INTS6 178 60 54 28 0 0 0.690 0.233 0.209 0.109 0.000 0.000 chr13 51356577 51458036
INTS7 175 58 72 44 0 0 0.678 0.225 0.279 0.171 0.000 0.000 chr1 211935403 212040557
INTS8 154 43 89 52 0 0 0.597 0.167 0.345 0.202 0.000 0.000 chr8 94818287 94886746
INTS9 178 63 67 34 0 0 0.690 0.244 0.260 0.132 0.000 0.000 chr8 28762661 28894969
INTU 178 62 71 42 0 0 0.690 0.240 0.275 0.163 0.000 0.000 chr4 127627957 127731737
INVS 90 11 131 76 0 0 0.349 0.043 0.508 0.295 0.000 0.000 chr9 100094243 100307175
IP6K1 129 38 111 56 0 0 0.500 0.147 0.430 0.217 0.000 0.000 chr3 49719294 49791542
IP6K2 130 32 112 63 0 0 0.504 0.124 0.434 0.244 0.000 0.000 chr3 48683003 48722221
IP6K3 182 52 65 47 0 0 0.705 0.202 0.252 0.182 0.000 0.000 chr6 33716662 33751905
IPCEF1 131 29 70 42 0 0 0.508 0.112 0.271 0.163 0.000 0.000 chr6 154149496 154361803
IPMK 172 60 74 41 0 0 0.667 0.233 0.287 0.159 0.000 0.000 chr10 58186517 58272894
IPO11 164 55 74 37 0 0 0.636 0.213 0.287 0.143 0.000 0.000 chr5 62407763 62633582
IPO13 183 76 69 27 1 0 0.709 0.295 0.267 0.105 0.004 0.000 chr1 43941950 43973022
IPO4 220 84 36 20 1 0 0.853 0.326 0.140 0.078 0.004 0.000 chr14 24175219 24193816
IPO5 189 65 61 33 0 0 0.733 0.252 0.236 0.128 0.000 0.000 chr13 97948675 98029296
IPO7 156 57 83 37 0 0 0.605 0.221 0.322 0.143 0.000 0.000 chr11 9379652 9453127
IPO8 187 68 61 30 0 0 0.725 0.264 0.236 0.116 0.000 0.000 chr12 30623988 30700869