Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
IPO9 197 67 52 34 0 0 0.764 0.260 0.202 0.132 0.000 0.000 chr1 201824157 201889291
IPPK 171 57 68 36 0 0 0.663 0.221 0.264 0.140 0.000 0.000 chr9 92608183 92675131
IPP 63 3 106 39 0 0 0.244 0.012 0.411 0.151 0.000 0.000 chr1 45693711 45755653
IQANK1 174 46 58 40 0 0 0.674 0.178 0.225 0.155 0.000 0.000 chr8 143729139 143795645
IQCA1L 223 76 29 23 0 0 0.864 0.295 0.112 0.089 0.000 0.000 chr7 151185873 151210496
IQCA1 103 25 111 59 0 0 0.399 0.097 0.430 0.229 0.000 0.000 chr2 236319151 236512476
IQCB1 153 44 93 53 0 0 0.593 0.171 0.360 0.205 0.000 0.000 chr3 121764761 121840060
IQCC 205 70 50 32 0 0 0.795 0.271 0.194 0.124 0.000 0.000 chr1 32200671 32213682
IQCD 165 56 84 45 0 0 0.640 0.217 0.326 0.174 0.000 0.000 chr12 113190446 113226094
IQCE 207 71 38 23 0 0 0.802 0.275 0.147 0.089 0.000 0.000 chr7 2553979 2619728
IQCF1 178 53 78 50 0 0 0.690 0.205 0.302 0.194 0.000 0.000 chr3 51889876 51908353
IQCF2 212 77 44 26 1 1 0.822 0.298 0.171 0.101 0.004 0.004 chr3 51856615 51868424
IQCF3 169 46 85 55 1 1 0.655 0.178 0.329 0.213 0.004 0.004 chr3 51824426 51835856
IQCF5 188 63 68 41 0 0 0.729 0.244 0.264 0.159 0.000 0.000 chr3 51868721 51880601
IQCF6 208 79 47 25 2 1 0.806 0.306 0.182 0.097 0.008 0.004 chr3 51773563 51784237
IQCG 139 27 92 64 0 0 0.539 0.105 0.357 0.248 0.000 0.000 chr3 197884077 197964991
IQCH 137 52 78 33 0 0 0.531 0.202 0.302 0.128 0.000 0.000 chr15 67249786 67506804
IQCJ 125 33 88 51 0 0 0.484 0.128 0.341 0.198 0.000 0.000 chr3 159064319 159268747
IQCK 121 26 93 58 0 0 0.469 0.101 0.360 0.225 0.000 0.000 chr16 19713271 19863467
IQCM 125 45 69 36 0 0 0.484 0.174 0.267 0.140 0.000 0.000 chr4 149346709 149820843
IQCN 216 78 33 20 0 0 0.837 0.302 0.128 0.078 0.000 0.000 chr19 18252098 18279452
IQGAP1 179 62 58 37 0 0 0.694 0.240 0.225 0.143 0.000 0.000 chr15 90383242 90507239
IQGAP2 110 26 73 43 0 0 0.426 0.101 0.283 0.167 0.000 0.000 chr5 76398285 76713132
IQGAP3 169 54 71 41 0 0 0.655 0.209 0.275 0.159 0.000 0.000 chr1 156520405 156577565
IQSEC1 124 28 80 50 0 0 0.481 0.109 0.310 0.194 0.000 0.000 chr3 12892043 13078429
IQSEC2 44 10 187 80 0 0 0.171 0.039 0.725 0.310 0.000 0.000 chrX 53227876 53326350
IQSEC2 84 25 172 79 0 0 0.326 0.097 0.667 0.306 0.000 0.000 chrX 53261328 53286584
IQSEC3 140 28 73 40 0 0 0.543 0.109 0.283 0.155 0.000 0.000 chr12 61767 183455
IQUB 184 65 65 32 0 0 0.713 0.252 0.252 0.124 0.000 0.000 chr7 123447193 123539595
IRAG1 138 29 87 53 0 0 0.535 0.112 0.337 0.205 0.000 0.000 chr11 10568095 10698755
IRAG2 171 37 66 50 0 0 0.663 0.143 0.256 0.194 0.000 0.000 chr12 25047706 25113335
IRAK1BP1 172 54 75 43 0 0 0.667 0.209 0.291 0.167 0.000 0.000 chr6 78862551 78908102
IRAK1 79 22 172 77 0 0 0.306 0.085 0.667 0.298 0.000 0.000 chrX 154005507 154024902
IRAK2 145 31 78 52 0 0 0.562 0.120 0.302 0.202 0.000 0.000 chr3 10159919 10248745
IRAK3 172 62 69 32 0 0 0.667 0.240 0.267 0.124 0.000 0.000 chr12 66184214 66259622
IRAK4 176 54 71 42 0 0 0.682 0.209 0.275 0.163 0.000 0.000 chr12 43753951 43794541
IREB2 209 81 41 20 0 0 0.810 0.314 0.159 0.078 0.000 0.000 chr15 78433216 78506453
IRF1 217 85 38 17 0 0 0.841 0.329 0.147 0.066 0.000 0.000 chr5 132476609 132495773
IRF2BP1 207 69 50 35 0 0 0.802 0.267 0.194 0.136 0.000 0.000 chr19 45878608 45891141
IRF2BP2 209 74 43 27 1 0 0.810 0.287 0.167 0.105 0.004 0.000 chr1 234599269 234615178
IRF2BPL 206 69 49 33 0 0 0.798 0.267 0.190 0.128 0.000 0.000 chr14 77019543 77033708
IRF2 187 60 43 28 0 0 0.725 0.233 0.167 0.109 0.000 0.000 chr4 184382729 184479550
IRF3 199 60 54 40 0 0 0.771 0.233 0.209 0.155 0.000 0.000 chr19 49654572 49670857
IRF4 229 89 24 11 1 1 0.888 0.345 0.093 0.043 0.004 0.004 chr6 386752 416443
IRF5 201 70 54 32 1 1 0.779 0.271 0.209 0.124 0.004 0.004 chr7 128932927 128955038
IRF6 213 81 43 22 0 0 0.826 0.314 0.167 0.085 0.000 0.000 chr1 209780617 209811142
IRF7 203 62 49 37 0 0 0.787 0.240 0.190 0.143 0.000 0.000 chr11 607555 620950
IRF8 215 83 36 18 0 0 0.833 0.322 0.140 0.070 0.000 0.000 chr16 85894162 85927606
IRF9 218 77 38 27 0 0 0.845 0.298 0.147 0.105 0.000 0.000 chr14 24156265 24171565
IRGC 205 66 48 34 0 0 0.795 0.256 0.186 0.132 0.000 0.000 chr19 43711076 43725021