Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
IRGM 194 66 60 37 0 0 0.752 0.256 0.233 0.143 0.000 0.000 chr5 150841521 150853702
IRGQ 212 71 41 30 1 0 0.822 0.275 0.159 0.116 0.004 0.000 chr19 43579367 43601134
IRS1 138 45 96 45 0 0 0.535 0.174 0.372 0.174 0.000 0.000 chr2 226726312 226804820
IRS2 198 71 53 28 0 0 0.767 0.275 0.205 0.109 0.000 0.000 chr13 109747695 109791583
IRS4 90 27 160 74 0 0 0.349 0.105 0.620 0.287 0.000 0.000 chrX 108714946 108741563
IRX1 227 79 27 22 0 0 0.880 0.306 0.105 0.085 0.000 0.000 chr5 3590832 3606403
IRX2 217 75 38 29 1 0 0.841 0.291 0.147 0.112 0.004 0.000 chr5 2741165 2756677
IRX3 193 58 60 42 0 0 0.748 0.225 0.233 0.163 0.000 0.000 chr16 54278304 54291787
IRX4 217 73 39 30 0 0 0.841 0.283 0.151 0.116 0.000 0.000 chr5 1872413 1887925
IRX5 194 62 59 38 0 0 0.752 0.240 0.229 0.147 0.000 0.000 chr16 54925865 54939485
IRX6 223 79 34 25 0 0 0.864 0.306 0.132 0.097 0.000 0.000 chr16 55319203 55335756
ISCA1 204 71 50 31 0 0 0.791 0.275 0.194 0.120 0.000 0.000 chr9 86259546 86287538
ISCA2 215 76 43 29 0 0 0.833 0.295 0.167 0.112 0.000 0.000 chr14 74488765 74502106
ISCU 222 87 33 16 1 0 0.860 0.337 0.128 0.062 0.004 0.000 chr12 108557596 108574368
ISG15 190 53 62 48 1 0 0.736 0.205 0.240 0.186 0.004 0.000 chr1 1008497 1019540
ISG20L2 201 61 54 42 1 0 0.779 0.236 0.209 0.163 0.004 0.000 chr1 156716895 156733766
ISG20 217 79 34 21 0 0 0.841 0.306 0.132 0.081 0.000 0.000 chr15 88634016 88661483
ISL1 170 55 81 46 1 0 0.659 0.213 0.314 0.178 0.004 0.000 chr5 51378448 51399730
ISL2 207 68 46 32 0 0 0.802 0.264 0.178 0.124 0.000 0.000 chr15 76331773 76347475
ISLR2 198 70 56 31 0 0 0.767 0.271 0.217 0.120 0.000 0.000 chr15 74125586 74141802
ISLR 216 76 40 27 0 0 0.837 0.295 0.155 0.105 0.000 0.000 chr15 74168710 74181871
ISM1 197 70 29 18 0 0 0.764 0.271 0.112 0.070 0.000 0.000 chr20 13216274 13305651
ISM2 139 21 104 72 0 0 0.539 0.081 0.403 0.279 0.000 0.000 chr14 77469394 77503816
ISOC1 208 72 43 28 0 0 0.806 0.279 0.167 0.109 0.000 0.000 chr5 129089749 129119028
ISOC2 189 52 56 42 0 0 0.733 0.202 0.217 0.163 0.000 0.000 chr19 55447985 55466642
IST1 175 54 71 44 0 0 0.678 0.209 0.275 0.171 0.000 0.000 chr16 71890531 71936199
ISX 204 76 47 24 0 0 0.791 0.295 0.182 0.093 0.000 0.000 chr22 35061158 35092387
ISY1 182 54 62 38 0 0 0.705 0.209 0.240 0.147 0.000 0.000 chr3 129122415 129166063
ISYNA1 153 34 96 66 0 0 0.593 0.132 0.372 0.256 0.000 0.000 chr19 18429388 18443133
ITCH 146 51 78 39 0 0 0.566 0.198 0.302 0.151 0.000 0.000 chr20 34358273 34516773
ITFG1 54 0 145 85 0 0 0.209 0.000 0.562 0.329 0.000 0.000 chr16 47149391 47466063
ITFG2 200 70 48 26 2 1 0.775 0.271 0.186 0.101 0.008 0.004 chr12 2807668 2830076
ITGA10 194 65 56 33 1 0 0.752 0.252 0.217 0.128 0.004 0.000 chr1 145886208 145915050
ITGA11 120 24 94 51 0 0 0.465 0.093 0.364 0.198 0.000 0.000 chr15 68291532 68437163
ITGA1 160 44 46 25 0 0 0.620 0.171 0.178 0.097 0.000 0.000 chr5 52782916 52964209
ITGA2B 176 54 69 38 0 0 0.682 0.209 0.267 0.147 0.000 0.000 chr17 44367181 44394649
ITGA2 198 70 39 23 0 0 0.767 0.271 0.151 0.089 0.000 0.000 chr5 52984352 53099779
ITGA3 200 62 50 36 0 0 0.775 0.240 0.194 0.140 0.000 0.000 chr17 50051110 50095481
ITGA4 183 70 47 22 0 0 0.709 0.271 0.182 0.085 0.000 0.000 chr2 181452386 181543940
ITGA5 164 39 78 52 0 0 0.636 0.151 0.302 0.202 0.000 0.000 chr12 54390261 54424266
ITGA6 175 51 69 49 0 0 0.678 0.198 0.267 0.190 0.000 0.000 chr2 172422586 172511459
ITGA7 164 37 77 55 0 0 0.636 0.143 0.298 0.213 0.000 0.000 chr12 55679568 55712904
ITGA8 109 27 87 50 0 0 0.422 0.105 0.337 0.194 0.000 0.000 chr10 15508954 15724922
ITGA9 83 15 95 51 0 0 0.322 0.058 0.368 0.198 0.000 0.000 chr3 37447141 37828507
ITGAD 187 68 63 33 0 0 0.725 0.264 0.244 0.128 0.000 0.000 chr16 31388335 31431505
ITGAE 150 42 66 39 0 0 0.581 0.163 0.256 0.151 0.000 0.000 chr17 3709628 3806188
ITGAL 158 34 80 54 0 0 0.612 0.132 0.310 0.209 0.000 0.000 chr16 30467742 30528185
ITGAM 121 18 112 71 0 0 0.469 0.070 0.434 0.275 0.000 0.000 chr16 31254975 31337877
ITGAV 153 33 75 55 0 0 0.593 0.128 0.291 0.213 0.000 0.000 chr2 186585056 186685901
ITGAX 174 45 63 41 0 0 0.674 0.174 0.244 0.159 0.000 0.000 chr16 31350176 31387999