Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
ITGB1BP1 137 22 101 69 0 0 0.531 0.085 0.391 0.267 0.000 0.000 chr2 9398475 9428528
ITGB1BP2 79 14 175 88 0 0 0.306 0.054 0.678 0.341 0.000 0.000 chrX 71296750 71310371
ITGB1 211 80 37 19 0 0 0.818 0.310 0.143 0.074 0.000 0.000 chr10 32895318 32963230
ITGB2 221 72 29 25 0 0 0.857 0.279 0.112 0.097 0.000 0.000 chr21 44880953 44925899
ITGB3BP 186 68 56 31 0 0 0.721 0.264 0.217 0.120 0.000 0.000 chr1 63435770 63528225
ITGB3 184 67 55 28 0 0 0.713 0.260 0.213 0.109 0.000 0.000 chr17 47248827 47318743
ITGB4 190 60 48 31 0 0 0.736 0.233 0.186 0.120 0.000 0.000 chr17 75716459 75762818
ITGB5 175 63 53 24 0 0 0.678 0.244 0.205 0.093 0.000 0.000 chr3 124756948 124892365
ITGB6 178 62 63 33 0 0 0.690 0.240 0.244 0.128 0.000 0.000 chr2 160094671 160205272
ITGB7 199 67 47 27 0 0 0.771 0.260 0.182 0.105 0.000 0.000 chr12 53186323 53212251
ITGB8 170 53 57 34 0 0 0.659 0.205 0.221 0.132 0.000 0.000 chr7 20325900 20420754
ITGBL1 152 44 55 39 0 0 0.589 0.171 0.213 0.151 0.000 0.000 chr13 101447675 101721446
ITIH1 202 65 52 37 0 0 0.783 0.252 0.202 0.143 0.000 0.000 chr3 52772599 52797062
ITIH2 189 69 49 27 0 0 0.733 0.267 0.190 0.105 0.000 0.000 chr10 7698316 7754520
ITIH3 206 68 47 33 0 0 0.798 0.264 0.182 0.128 0.000 0.000 chr3 52789796 52813797
ITIH4 194 61 59 40 0 0 0.752 0.236 0.229 0.155 0.000 0.000 chr3 52807962 52835672
ITIH5 170 43 50 35 0 0 0.659 0.167 0.194 0.136 0.000 0.000 chr10 7554270 7671966
ITIH6 84 24 165 74 0 0 0.326 0.093 0.640 0.287 0.000 0.000 chrX 54743918 54803255
ITK 173 50 63 43 0 0 0.671 0.194 0.244 0.167 0.000 0.000 chr5 157175840 157260185
ITLN1 213 86 44 19 0 0 0.826 0.333 0.171 0.074 0.000 0.000 chr1 160871540 160890180
ITLN2 239 90 19 15 0 0 0.926 0.349 0.074 0.058 0.000 0.000 chr1 160940025 160959809
ITM2A 101 28 156 76 1 1 0.391 0.109 0.605 0.295 0.004 0.004 chrX 79355384 79372334
ITM2B 168 57 81 40 0 0 0.651 0.221 0.314 0.155 0.000 0.000 chr13 48228206 48275357
ITM2C 198 56 52 42 0 0 0.767 0.217 0.202 0.163 0.000 0.000 chr2 230859942 230884248
ITPA 206 73 45 26 0 0 0.798 0.283 0.174 0.101 0.000 0.000 chr20 3204498 3228860
ITPK1 121 20 75 49 0 0 0.469 0.078 0.291 0.190 0.000 0.000 chr14 92931914 93120925
ITPKA 212 75 43 27 0 0 0.822 0.291 0.167 0.105 0.000 0.000 chr15 41488874 41508551
ITPKB 174 61 54 30 0 0 0.674 0.236 0.209 0.116 0.000 0.000 chr1 226626690 226744282
ITPKC 193 64 54 33 0 0 0.748 0.248 0.209 0.128 0.000 0.000 chr19 40712112 40745860
ITPR1 87 14 72 49 0 0 0.337 0.054 0.279 0.190 0.000 0.000 chr3 4488348 4852506
ITPR2 70 7 97 56 0 0 0.271 0.027 0.376 0.217 0.000 0.000 chr12 26330352 26838194
ITPR3 170 51 64 38 0 0 0.659 0.198 0.248 0.147 0.000 0.000 chr6 33616322 33701562
ITPRID1 155 43 76 46 0 0 0.601 0.167 0.295 0.178 0.000 0.000 chr7 31509090 31661504
ITPRID2 145 44 86 46 0 0 0.562 0.171 0.333 0.178 0.000 0.000 chr2 181886730 181935738
ITPRIPL1 181 65 75 39 1 0 0.702 0.252 0.291 0.151 0.004 0.000 chr2 96320317 96333353
ITPRIPL2 164 49 79 44 0 0 0.636 0.190 0.306 0.171 0.000 0.000 chr16 19108964 19126629
ITPRIP 161 51 86 47 1 1 0.624 0.198 0.333 0.182 0.004 0.004 chr10 104304700 104343465
ITSN1 120 31 82 50 0 0 0.465 0.120 0.318 0.194 0.000 0.000 chr21 33637501 33904861
ITSN2 111 26 109 58 0 0 0.430 0.101 0.422 0.225 0.000 0.000 chr2 24197864 24365536
IVD 188 62 67 40 0 0 0.729 0.240 0.260 0.155 0.000 0.000 chr15 40400795 40426308
IVL 212 77 43 25 1 1 0.822 0.298 0.167 0.097 0.004 0.004 chr1 152903546 152916886
IVNS1ABP 189 68 62 32 0 0 0.733 0.264 0.240 0.124 0.000 0.000 chr1 185291388 185322243
IWS1 168 58 82 42 0 0 0.651 0.225 0.318 0.163 0.000 0.000 chr2 127475812 127531489
IYD 206 67 47 33 0 0 0.798 0.260 0.182 0.128 0.000 0.000 chr6 150364012 150410969
IZUMO1R 228 82 29 23 1 0 0.884 0.318 0.112 0.089 0.004 0.000 chr11 94299580 94313146
IZUMO1 204 67 47 31 0 0 0.791 0.260 0.182 0.120 0.000 0.000 chr19 48735852 48751909
IZUMO2 196 58 55 42 1 0 0.760 0.225 0.213 0.163 0.004 0.000 chr19 50147548 50168281
IZUMO3 212 77 43 26 0 0 0.822 0.298 0.167 0.101 0.000 0.000 chr9 24537952 24550897
IZUMO4 226 79 30 24 0 0 0.876 0.306 0.116 0.093 0.000 0.000 chr19 2091915 2104590
JADE1 138 36 104 61 0 0 0.535 0.140 0.403 0.236 0.000 0.000 chr4 128804700 128880224