Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
JADE2 193 67 38 24 0 0 0.748 0.260 0.147 0.093 0.000 0.000 chr5 134520670 134588227
JADE3 64 16 174 78 0 0 0.248 0.062 0.674 0.302 0.000 0.000 chrX 46907421 47066242
JAG1 205 67 42 28 0 0 0.795 0.260 0.163 0.109 0.000 0.000 chr20 10632684 10678999
JAG2 181 53 59 36 0 0 0.702 0.205 0.229 0.140 0.000 0.000 chr14 105135995 105173776
JAGN1 199 61 56 42 1 0 0.771 0.236 0.217 0.163 0.004 0.000 chr3 9885610 9899349
JAK1 162 45 63 41 0 0 0.628 0.174 0.244 0.159 0.000 0.000 chr1 64828229 64971549
JAK2 181 55 59 41 0 0 0.702 0.213 0.229 0.159 0.000 0.000 chr9 4980272 5134948
JAK3 206 64 34 27 0 0 0.798 0.248 0.132 0.105 0.000 0.000 chr19 17819782 17852982
JAKMIP1 116 25 76 45 0 0 0.450 0.097 0.295 0.174 0.000 0.000 chr4 6021199 6205549
JAKMIP2 124 45 73 37 0 0 0.481 0.174 0.283 0.143 0.000 0.000 chr5 147580438 147787728
JAKMIP3 78 12 95 34 0 0 0.302 0.047 0.368 0.132 0.000 0.000 chr10 132060946 132189858
JAM2 163 56 75 36 0 0 0.632 0.217 0.291 0.140 0.000 0.000 chr21 25634258 25722562
JAM3 194 64 45 32 0 0 0.752 0.248 0.174 0.124 0.000 0.000 chr11 134064072 134157001
JAML 186 64 62 36 0 0 0.721 0.248 0.240 0.140 0.000 0.000 chr11 118188725 118230011
JARID2 141 39 62 37 0 0 0.547 0.151 0.240 0.143 0.000 0.000 chr6 15241069 15527042
JAZF1 102 17 77 47 0 0 0.395 0.066 0.298 0.182 0.000 0.000 chr7 27825577 28185795
JCAD 198 65 47 30 0 0 0.767 0.252 0.182 0.116 0.000 0.000 chr10 30007803 30064586
JCHAIN 182 57 73 45 0 0 0.705 0.221 0.283 0.174 0.000 0.000 chr4 70650541 70671508
JDP2 178 55 65 38 0 0 0.690 0.213 0.252 0.147 0.000 0.000 chr14 75423022 75479107
JHY 165 57 66 38 0 0 0.640 0.221 0.256 0.147 0.000 0.000 chr11 122877759 122968862
JKAMP 178 51 75 49 0 0 0.690 0.198 0.291 0.190 0.000 0.000 chr14 59479517 59510410
JMJD1C 154 54 79 41 0 0 0.597 0.209 0.306 0.159 0.000 0.000 chr10 63162225 63470977
JMJD4 217 76 39 28 0 0 0.841 0.295 0.151 0.109 0.000 0.000 chr1 227726191 227740302
JMJD6 219 81 39 24 0 0 0.849 0.314 0.151 0.093 0.000 0.000 chr17 76713451 76731606
JMJD7 192 55 59 43 0 0 0.744 0.213 0.229 0.167 0.000 0.000 chr15 41823092 41842581
JMJD8 181 57 73 44 0 0 0.702 0.221 0.283 0.171 0.000 0.000 chr16 676670 689334
JMY 170 56 68 39 0 0 0.659 0.217 0.264 0.151 0.000 0.000 chr5 79231131 79332211
JOSD1 187 65 64 34 0 0 0.725 0.252 0.248 0.132 0.000 0.000 chr22 38680543 38705943
JOSD2 187 49 60 46 0 0 0.725 0.190 0.233 0.178 0.000 0.000 chr19 50500998 50516191
JPH1 164 53 67 41 0 0 0.636 0.205 0.260 0.159 0.000 0.000 chr8 74229700 74326540
JPH2 168 49 60 35 0 0 0.651 0.190 0.233 0.136 0.000 0.000 chr20 44101590 44192188
JPH3 189 52 37 25 0 0 0.733 0.202 0.143 0.097 0.000 0.000 chr16 87597508 87703156
JPH4 181 52 69 45 0 0 0.702 0.202 0.267 0.174 0.000 0.000 chr14 23563038 23583790
JPT1 193 61 52 32 0 0 0.748 0.236 0.202 0.124 0.000 0.000 chr17 75130248 75159512
JPT2 192 72 58 29 0 0 0.744 0.279 0.225 0.112 0.000 0.000 chr16 1673279 1707086
JRKL 213 79 45 26 0 0 0.826 0.306 0.174 0.101 0.000 0.000 chr11 96385013 96398561
JRK 232 87 25 17 0 0 0.899 0.337 0.097 0.066 0.000 0.000 chr8 142652460 142674967
JSRP1 217 72 35 27 1 1 0.841 0.279 0.136 0.105 0.004 0.004 chr19 2247252 2261417
JTB 192 66 65 39 0 0 0.744 0.256 0.252 0.151 0.000 0.000 chr1 153969269 153982674
JUNB 180 50 71 48 0 0 0.698 0.194 0.275 0.186 0.000 0.000 chr19 12786486 12798315
JUND 203 72 46 25 0 0 0.787 0.279 0.178 0.097 0.000 0.000 chr19 18274694 18286622
JUN 219 78 37 25 0 0 0.849 0.302 0.143 0.097 0.000 0.000 chr1 58775791 58789047
JUP 205 69 47 33 0 0 0.795 0.267 0.182 0.128 0.000 0.000 chr17 41749609 41791711
KALRN 57 10 108 59 0 0 0.221 0.039 0.419 0.229 0.000 0.000 chr3 124028369 124731325
KANK1 126 30 84 44 0 0 0.488 0.116 0.326 0.171 0.000 0.000 chr9 499695 751103
KANK2 196 63 49 35 0 0 0.760 0.244 0.190 0.136 0.000 0.000 chr19 11159270 11202545
KANK3 202 62 45 33 0 0 0.783 0.240 0.174 0.128 0.000 0.000 chr19 8317584 8348262
KANK4 160 41 61 41 0 0 0.620 0.159 0.236 0.159 0.000 0.000 chr1 62231165 62324434
KANSL1L 141 44 90 52 0 0 0.547 0.171 0.349 0.202 0.000 0.000 chr2 210016421 210176409
KANSL1 160 49 84 48 0 0 0.620 0.190 0.326 0.186 0.000 0.000 chr17 46024916 46198429