Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
KRT72 215 78 39 25 1 0 0.833 0.302 0.151 0.097 0.004 0.000 chr12 52580589 52606463
KRT73 211 72 43 30 1 0 0.818 0.279 0.167 0.116 0.004 0.000 chr12 52602570 52623559
KRT74 223 78 33 27 0 0 0.864 0.302 0.128 0.105 0.000 0.000 chr12 52560782 52578843
KRT75 207 67 47 35 0 0 0.802 0.260 0.182 0.136 0.000 0.000 chr12 52419070 52439371
KRT76 221 83 33 21 1 1 0.857 0.322 0.128 0.081 0.004 0.004 chr12 52763155 52782345
KRT77 209 73 46 30 0 0 0.810 0.283 0.178 0.116 0.000 0.000 chr12 52684626 52708524
KRT78 204 73 52 31 0 0 0.791 0.283 0.202 0.120 0.000 0.000 chr12 52832807 52853994
KRT79 222 83 34 21 0 0 0.860 0.322 0.132 0.081 0.000 0.000 chr12 52816408 52839311
KRT7 219 75 32 24 0 0 0.849 0.291 0.124 0.093 0.000 0.000 chr12 52228243 52253921
KRT80 213 70 41 31 1 1 0.826 0.271 0.159 0.120 0.004 0.004 chr12 52163996 52197014
KRT81 226 86 28 16 1 1 0.876 0.333 0.109 0.062 0.004 0.004 chr12 52280913 52296534
KRT82 184 49 64 47 0 0 0.713 0.190 0.248 0.182 0.000 0.000 chr12 52388931 52411335
KRT83 213 73 41 28 0 0 0.826 0.283 0.159 0.109 0.000 0.000 chr12 52309301 52326398
KRT84 211 67 45 37 0 0 0.818 0.260 0.174 0.143 0.000 0.000 chr12 52372812 52390652
KRT85 208 65 46 37 1 0 0.806 0.252 0.178 0.143 0.004 0.000 chr12 52355006 52372481
KRT86 206 70 41 26 1 1 0.798 0.271 0.159 0.101 0.004 0.004 chr12 52269645 52314163
KRT8 192 59 63 44 0 0 0.744 0.229 0.244 0.171 0.000 0.000 chr12 52892191 52910076
KRT9 150 43 102 57 1 0 0.581 0.167 0.395 0.221 0.004 0.000 chr17 41560836 41577059
KRTAP1-1 201 66 54 37 1 0 0.779 0.256 0.209 0.143 0.004 0.000 chr17 41035541 41046450
KRTAP1-3 217 77 37 25 1 0 0.841 0.298 0.143 0.097 0.004 0.000 chr17 41028884 41039874
KRTAP1-4 214 73 42 30 0 0 0.829 0.283 0.163 0.116 0.000 0.000 chr17 41024351 41035195
KRTAP1-5 214 77 40 25 0 0 0.829 0.298 0.155 0.097 0.000 0.000 chr17 41021026 41032208
KRTAP10-10 218 75 38 28 0 0 0.845 0.291 0.147 0.109 0.000 0.000 chr21 44632356 44643455
KRTAP10-11 210 74 47 30 0 0 0.814 0.287 0.182 0.116 0.000 0.000 chr21 44641414 44652650
KRTAP10-12 222 80 33 23 1 0 0.860 0.310 0.128 0.089 0.004 0.000 chr21 44692172 44703044
KRTAP10-1 218 79 34 22 0 0 0.845 0.306 0.132 0.085 0.000 0.000 chr21 44533981 44545195
KRTAP10-2 231 85 24 17 0 0 0.895 0.329 0.093 0.066 0.000 0.000 chr21 44545357 44556505
KRTAP10-3 233 86 23 17 1 1 0.903 0.333 0.089 0.066 0.004 0.004 chr21 44552790 44563795
KRTAP10-4 237 92 20 12 0 0 0.919 0.357 0.078 0.047 0.000 0.000 chr21 44568729 44580371
KRTAP10-5 233 86 23 18 1 0 0.903 0.333 0.089 0.070 0.004 0.000 chr21 44574455 44585604
KRTAP10-6 213 72 40 29 2 1 0.826 0.279 0.155 0.112 0.008 0.004 chr21 44586268 44597505
KRTAP10-7 222 79 33 24 0 0 0.860 0.306 0.128 0.093 0.000 0.000 chr21 44595597 44607174
KRTAP10-8 237 89 21 16 0 0 0.919 0.345 0.081 0.062 0.000 0.000 chr21 44607079 44617954
KRTAP10-9 235 90 23 15 0 0 0.911 0.349 0.089 0.058 0.000 0.000 chr21 44622093 44633378
KRTAP11-1 226 79 31 25 0 0 0.876 0.306 0.120 0.097 0.000 0.000 chr21 30875644 30886580
KRTAP12-1 211 74 45 29 0 0 0.818 0.287 0.174 0.112 0.000 0.000 chr21 44676576 44687163
KRTAP12-2 211 79 43 23 1 0 0.818 0.306 0.167 0.089 0.004 0.000 chr21 44661189 44671927
KRTAP12-3 211 75 42 26 3 2 0.818 0.291 0.163 0.101 0.012 0.008 chr21 44652932 44663341
KRTAP12-4 207 74 46 27 2 1 0.802 0.287 0.178 0.105 0.008 0.004 chr21 44649213 44659659
KRTAP13-1 211 74 44 30 3 1 0.818 0.287 0.171 0.116 0.012 0.004 chr21 30391031 30401822
KRTAP13-2 230 86 28 19 0 0 0.891 0.333 0.109 0.074 0.000 0.000 chr21 30366390 30377271
KRTAP13-3 206 72 50 32 0 0 0.798 0.279 0.194 0.124 0.000 0.000 chr21 30420380 30430926
KRTAP13-4 203 72 52 30 0 0 0.787 0.279 0.202 0.116 0.000 0.000 chr21 30425220 30436026
KRTAP15-1 212 77 42 24 0 0 0.822 0.298 0.163 0.093 0.000 0.000 chr21 30435275 30445869
KRTAP16-1 210 71 47 34 1 0 0.814 0.275 0.182 0.132 0.004 0.000 chr17 41302700 41314309
KRTAP17-1 206 69 46 32 2 1 0.798 0.267 0.178 0.124 0.008 0.004 chr17 41309912 41320710
KRTAP19-1 211 78 44 25 3 2 0.818 0.302 0.171 0.097 0.012 0.008 chr21 30474706 30485367
KRTAP19-2 209 81 44 21 2 1 0.810 0.314 0.171 0.081 0.008 0.004 chr21 30482043 30492436
KRTAP19-3 206 81 49 22 1 0 0.798 0.314 0.190 0.085 0.004 0.000 chr21 30486462 30497013
KRTAP19-4 211 81 47 24 0 0 0.818 0.314 0.182 0.093 0.000 0.000 chr21 30491824 30502165