Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
KRTAP19-5 210 81 48 24 0 0 0.814 0.314 0.186 0.093 0.000 0.000 chr21 30496657 30507141
KRTAP19-6 196 75 60 30 1 0 0.760 0.291 0.233 0.116 0.004 0.000 chr21 30536535 30546864
KRTAP19-7 210 75 48 30 0 0 0.814 0.291 0.186 0.116 0.000 0.000 chr21 30555875 30566314
KRTAP19-8 188 64 65 37 1 0 0.729 0.248 0.252 0.143 0.004 0.000 chr21 31033159 31043476
KRTAP2-1 203 67 53 36 0 0 0.787 0.260 0.205 0.140 0.000 0.000 chr17 41041541 41052316
KRTAP2-2 205 69 52 36 1 0 0.795 0.267 0.202 0.140 0.004 0.000 chr17 41049498 41060230
KRTAP2-3 220 79 36 25 1 0 0.853 0.306 0.140 0.097 0.004 0.000 chr17 41054240 41065114
KRTAP2-4 216 75 39 28 1 0 0.837 0.291 0.151 0.109 0.004 0.000 chr17 41060116 41070879
KRTAP20-1 187 61 67 42 2 0 0.725 0.236 0.260 0.163 0.008 0.000 chr21 30611425 30621699
KRTAP20-2 188 69 65 34 2 0 0.729 0.267 0.252 0.132 0.008 0.000 chr21 30630206 30640619
KRTAP20-3 179 65 77 39 1 0 0.694 0.252 0.298 0.151 0.004 0.000 chr21 30637864 30648136
KRTAP20-4 195 63 58 40 2 0 0.756 0.244 0.225 0.155 0.008 0.000 chr21 30615627 30625850
KRTAP21-1 183 68 71 34 1 0 0.709 0.264 0.275 0.132 0.004 0.000 chr21 30750015 30760428
KRTAP21-2 189 72 65 30 1 1 0.733 0.279 0.252 0.116 0.004 0.004 chr21 30741794 30752259
KRTAP21-3 203 78 54 26 0 0 0.787 0.302 0.209 0.101 0.000 0.000 chr21 30713525 30723777
KRTAP22-1 220 80 37 25 1 0 0.853 0.310 0.143 0.097 0.004 0.000 chr21 30596087 30606382
KRTAP22-2 216 86 39 18 3 1 0.837 0.333 0.151 0.070 0.012 0.004 chr21 30585105 30595397
KRTAP23-1 210 72 46 32 1 1 0.814 0.279 0.178 0.124 0.004 0.004 chr21 30343399 30353606
KRTAP24-1 225 86 32 19 1 0 0.872 0.333 0.124 0.074 0.004 0.000 chr21 30276309 30287950
KRTAP25-1 225 83 32 21 0 0 0.872 0.322 0.124 0.081 0.000 0.000 chr21 30284145 30294514
KRTAP26-1 215 78 38 23 3 2 0.833 0.302 0.147 0.089 0.012 0.008 chr21 30314124 30325315
KRTAP27-1 209 74 46 29 2 1 0.810 0.287 0.178 0.112 0.008 0.004 chr21 30332013 30342694
KRTAP29-1 199 68 57 35 0 0 0.771 0.264 0.221 0.136 0.000 0.000 chr17 41296826 41307851
KRTAP3-1 219 84 36 19 2 1 0.849 0.326 0.140 0.074 0.008 0.004 chr17 41003521 41014128
KRTAP3-2 236 93 21 12 1 0 0.915 0.360 0.081 0.047 0.004 0.000 chr17 40994193 41004906
KRTAP3-3 235 91 22 14 1 0 0.911 0.353 0.085 0.054 0.004 0.000 chr17 40988430 40999164
KRTAP4-11 213 75 42 28 0 0 0.826 0.291 0.163 0.109 0.000 0.000 chr17 41112181 41123373
KRTAP4-12 211 73 46 31 0 0 0.818 0.283 0.178 0.120 0.000 0.000 chr17 41118091 41129182
KRTAP4-16 211 73 40 27 1 0 0.818 0.283 0.155 0.105 0.004 0.000 chr17 41096502 41107209
KRTAP4-1 212 69 45 36 0 0 0.822 0.267 0.174 0.140 0.000 0.000 chr17 41179100 41189911
KRTAP4-2 202 67 54 36 0 0 0.783 0.260 0.209 0.140 0.000 0.000 chr17 41172446 41183221
KRTAP4-3 204 71 52 33 0 0 0.791 0.275 0.202 0.128 0.000 0.000 chr17 41162231 41173221
KRTAP4-4 209 74 44 28 0 0 0.810 0.287 0.171 0.109 0.000 0.000 chr17 41154649 41165748
KRTAP4-5 200 66 57 39 1 0 0.775 0.256 0.221 0.151 0.004 0.000 chr17 41143924 41154825
KRTAP4-6 218 77 37 26 1 0 0.845 0.298 0.143 0.101 0.004 0.000 chr17 41134433 41145544
KRTAP4-7 220 74 38 31 0 0 0.853 0.287 0.147 0.120 0.000 0.000 chr17 41079150 41090144
KRTAP4-8 207 70 46 32 1 0 0.802 0.271 0.178 0.124 0.004 0.000 chr17 41091981 41103142
KRTAP4-9 212 77 44 26 0 0 0.822 0.298 0.171 0.101 0.000 0.000 chr17 41100389 41111488
KRTAP5-10 233 88 24 16 0 0 0.903 0.341 0.093 0.062 0.000 0.000 chr11 71560563 71571735
KRTAP5-11 231 81 27 24 0 0 0.895 0.314 0.105 0.093 0.000 0.000 chr11 71576855 71587875
KRTAP5-1 214 72 39 29 0 0 0.829 0.279 0.151 0.112 0.000 0.000 chr11 1579342 1590283
KRTAP5-2 206 68 47 34 2 0 0.798 0.264 0.182 0.132 0.008 0.000 chr11 1592177 1603294
KRTAP5-3 213 70 41 32 1 0 0.826 0.271 0.159 0.124 0.004 0.000 chr11 1602565 1613463
KRTAP5-4 213 75 35 22 2 0 0.826 0.291 0.136 0.085 0.008 0.000 chr11 1615958 1627138
KRTAP5-5 222 81 33 22 1 0 0.860 0.314 0.128 0.085 0.004 0.000 chr11 1624775 1635930
KRTAP5-6 211 70 40 28 0 0 0.818 0.271 0.155 0.109 0.000 0.000 chr11 1692195 1702755
KRTAP5-7 229 85 28 19 0 0 0.888 0.329 0.109 0.074 0.000 0.000 chr11 71522267 71533669
KRTAP5-8 220 83 36 20 0 0 0.853 0.322 0.140 0.078 0.000 0.000 chr11 71533025 71544209
KRTAP5-9 210 74 45 28 0 0 0.814 0.287 0.174 0.109 0.000 0.000 chr11 71543420 71554608
KRTAP6-1 189 64 65 38 1 0 0.733 0.248 0.252 0.147 0.004 0.000 chr21 30608431 30618930