Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
KRTAP6-2 220 82 38 23 0 0 0.853 0.318 0.147 0.089 0.000 0.000 chr21 30593590 30603902
KRTAP6-3 216 82 40 22 2 1 0.837 0.318 0.155 0.085 0.008 0.004 chr21 30587440 30598075
KRTAP7-1 212 78 44 25 0 0 0.822 0.302 0.171 0.097 0.000 0.000 chr21 30824039 30834759
KRTAP8-1 203 73 55 32 0 0 0.787 0.283 0.213 0.124 0.000 0.000 chr21 30807697 30818274
KRTAP9-1 229 86 29 19 0 0 0.888 0.333 0.112 0.074 0.000 0.000 chr17 41184887 41195639
KRTAP9-2 218 82 36 20 1 1 0.845 0.318 0.140 0.078 0.004 0.004 chr17 41221648 41232652
KRTAP9-3 219 86 35 15 0 0 0.849 0.333 0.136 0.058 0.000 0.000 chr17 41227449 41238454
KRTAP9-4 220 84 36 20 1 0 0.853 0.326 0.140 0.078 0.004 0.000 chr17 41244687 41255653
KRTAP9-6 124 37 107 55 0 0 0.481 0.143 0.415 0.213 0.000 0.000 chr17 41260378 41270860
KRTAP9-7 128 36 113 56 0 0 0.496 0.140 0.438 0.217 0.000 0.000 chr17 41270698 41281207
KRTAP9-8 217 88 39 17 1 0 0.841 0.341 0.151 0.066 0.004 0.000 chr17 41232999 41244004
KRTAP9-9 207 79 44 22 1 0 0.802 0.306 0.171 0.085 0.004 0.000 chr17 41250384 41261364
KRTCAP2 164 40 84 56 1 0 0.636 0.155 0.326 0.217 0.004 0.000 chr1 155164408 155178304
KRTCAP3 142 31 107 66 0 0 0.550 0.120 0.415 0.256 0.000 0.000 chr2 27437381 27449297
KRTDAP 214 77 41 25 0 0 0.829 0.298 0.159 0.097 0.000 0.000 chr19 35482324 35495464
KSR1 122 18 96 69 0 0 0.473 0.070 0.372 0.267 0.000 0.000 chr17 27451448 27631435
KSR2 97 19 68 37 0 0 0.376 0.074 0.264 0.143 0.000 0.000 chr12 117448012 117973990
KTI12 158 48 97 55 1 0 0.612 0.186 0.376 0.213 0.004 0.000 chr1 52027103 52038810
KTN1 156 56 78 41 0 0 0.605 0.217 0.302 0.159 0.000 0.000 chr14 55575207 55689579
KXD1 197 67 58 36 0 0 0.764 0.260 0.225 0.140 0.000 0.000 chr19 18552870 18574378
KYAT1 162 53 77 41 0 0 0.628 0.205 0.298 0.159 0.000 0.000 chr9 128827942 128886950
KYAT3 155 48 89 50 0 0 0.601 0.186 0.345 0.194 0.000 0.000 chr1 88930779 88997629
KYNU 165 57 60 33 0 0 0.640 0.221 0.233 0.128 0.000 0.000 chr2 142872664 143060833
KY 146 36 92 56 0 0 0.566 0.140 0.357 0.217 0.000 0.000 chr3 134594923 134656022
L1CAM 79 15 168 79 0 0 0.306 0.058 0.651 0.306 0.000 0.000 chrX 153856516 153891173
L1TD1 206 68 46 34 1 0 0.798 0.264 0.178 0.132 0.004 0.000 chr1 62189849 62217328
L2HGDH 179 50 69 48 0 0 0.694 0.194 0.267 0.186 0.000 0.000 chr14 50237434 50317229
L3HYPDH 176 47 76 54 0 0 0.682 0.182 0.295 0.209 0.000 0.000 chr14 59467606 59489408
L3MBTL1 210 76 40 24 0 0 0.814 0.295 0.155 0.093 0.000 0.000 chr20 43502697 43546895
L3MBTL2 184 59 64 38 0 0 0.713 0.229 0.248 0.147 0.000 0.000 chr22 41200312 41236271
L3MBTL3 148 41 84 48 0 0 0.574 0.159 0.326 0.186 0.000 0.000 chr6 130013581 130146438
L3MBTL4 46 3 91 48 0 0 0.178 0.012 0.353 0.186 0.000 0.000 chr18 5949717 6419911
LACC1 227 90 30 14 0 0 0.880 0.349 0.116 0.054 0.000 0.000 chr13 43874904 43898932
LACRT 206 71 48 30 0 0 0.798 0.275 0.186 0.116 0.000 0.000 chr12 54625811 54639895
LACTB2 175 61 75 38 0 0 0.678 0.236 0.291 0.147 0.000 0.000 chr8 70632266 70674185
LACTBL1 224 86 26 13 1 0 0.868 0.333 0.101 0.050 0.004 0.000 chr1 22948043 22977866
LACTB 207 71 47 30 0 0 0.802 0.275 0.182 0.116 0.000 0.000 chr15 63116861 63147061
LAD1 215 79 35 19 0 0 0.833 0.306 0.136 0.074 0.000 0.000 chr1 201375833 201404324
LAG3 235 86 21 17 0 0 0.911 0.333 0.081 0.066 0.000 0.000 chr12 6767520 6783455
LAGE3 80 15 167 82 1 0 0.310 0.058 0.647 0.318 0.004 0.000 chrX 154472775 154484281
LAIR1 230 82 21 17 0 0 0.891 0.318 0.081 0.066 0.000 0.000 chr19 54346384 54369931
LAIR2 237 90 19 13 1 1 0.919 0.349 0.074 0.050 0.004 0.004 chr19 54497831 54515687
LALBA 225 80 32 24 0 0 0.872 0.310 0.124 0.093 0.000 0.000 chr12 48562684 48575046
LAMA1 138 25 56 40 0 0 0.535 0.097 0.217 0.155 0.000 0.000 chr18 6936742 7122797
LAMA2 43 5 122 64 0 0 0.167 0.019 0.473 0.248 0.000 0.000 chr6 128878138 129521566
LAMA3 139 39 87 49 0 0 0.539 0.151 0.337 0.190 0.000 0.000 chr18 23684453 23960066
LAMA3 166 55 79 42 0 0 0.643 0.213 0.306 0.163 0.000 0.000 chr18 23868020 23960066
LAMA4 156 51 56 26 0 0 0.605 0.198 0.217 0.101 0.000 0.000 chr6 112102931 112259567
LAMA5 92 11 78 25 0 0 0.357 0.043 0.302 0.097 0.000 0.000 chr20 62304065 62372312
LAMB1 181 56 51 32 0 0 0.702 0.217 0.198 0.124 0.000 0.000 chr7 107918799 108008161