Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LAMB2 146 33 98 61 1 0 0.566 0.128 0.380 0.236 0.004 0.000 chr3 49116114 49138050
LAMB3 221 86 29 14 0 0 0.857 0.333 0.112 0.054 0.000 0.000 chr1 209609870 209657425
LAMB4 145 42 70 41 0 0 0.562 0.163 0.271 0.159 0.000 0.000 chr7 108018553 108135361
LAMC1 153 52 87 47 0 0 0.593 0.202 0.337 0.182 0.000 0.000 chr1 183018420 183150592
LAMC2 167 56 66 37 0 0 0.647 0.217 0.256 0.143 0.000 0.000 chr1 183181264 183250127
LAMC3 179 56 45 26 0 0 0.694 0.217 0.174 0.101 0.000 0.000 chr9 131004174 131099473
LAMP1 177 49 64 41 0 0 0.686 0.190 0.248 0.159 0.000 0.000 chr13 113292239 113328672
LAMP2 83 23 170 77 0 0 0.322 0.089 0.659 0.298 0.000 0.000 chrX 120421148 120474296
LAMP3 185 67 62 31 0 0 0.717 0.260 0.240 0.120 0.000 0.000 chr3 183117215 183167734
LAMP5 223 80 33 23 0 0 0.864 0.310 0.128 0.089 0.000 0.000 chr20 9509590 9535524
LAMTOR1 211 81 45 24 2 0 0.818 0.314 0.174 0.093 0.008 0.000 chr11 72092292 72108297
LAMTOR2 167 47 85 54 1 0 0.647 0.182 0.329 0.209 0.004 0.000 chr1 156049782 156063506
LAMTOR3 191 66 64 37 0 0 0.740 0.256 0.248 0.143 0.000 0.000 chr4 99873336 99899427
LAMTOR4 201 69 47 29 2 0 0.779 0.267 0.182 0.112 0.008 0.000 chr7 100143918 100159203
LAMTOR5 222 84 33 18 1 1 0.860 0.326 0.128 0.070 0.004 0.004 chr1 110396253 110412694
LANCL1 178 62 61 33 0 0 0.690 0.240 0.236 0.128 0.000 0.000 chr2 210426251 210481759
LANCL2 175 57 68 39 0 0 0.678 0.221 0.264 0.151 0.000 0.000 chr7 55360337 55438737
LANCL3 35 1 207 95 0 0 0.136 0.004 0.802 0.368 0.000 0.000 chrX 37566661 37689463
LAP3 149 30 92 65 0 0 0.578 0.116 0.357 0.252 0.000 0.000 chr4 17572198 17612970
LAPTM4A 211 82 41 20 1 1 0.818 0.318 0.159 0.078 0.004 0.004 chr2 20027650 20056628
LAPTM4B 189 57 51 33 0 0 0.733 0.221 0.198 0.128 0.000 0.000 chr8 97770788 97858013
LAPTM5 210 69 35 26 0 0 0.814 0.267 0.136 0.101 0.000 0.000 chr1 30727469 30762774
LARGE1 54 1 92 53 0 0 0.209 0.004 0.357 0.205 0.000 0.000 chr22 33267509 33925476
LARGE2 208 71 43 28 0 0 0.806 0.275 0.167 0.109 0.000 0.000 chr11 45917656 45934096
LARP1B 167 48 74 50 0 0 0.647 0.186 0.287 0.194 0.000 0.000 chr4 128056312 128216988
LARP1 151 31 78 53 0 0 0.585 0.120 0.302 0.205 0.000 0.000 chr5 154750377 154822605
LARP4B 143 33 74 47 0 0 0.554 0.128 0.287 0.182 0.000 0.000 chr10 804497 936705
LARP4 158 57 82 37 0 0 0.612 0.221 0.318 0.143 0.000 0.000 chr12 50395885 50485004
LARP6 195 67 58 34 0 0 0.756 0.260 0.225 0.132 0.000 0.000 chr15 70824130 70859157
LARP7 209 75 44 26 1 1 0.810 0.291 0.171 0.101 0.004 0.004 chr4 112632143 112662586
LARS1 141 39 97 52 0 0 0.547 0.151 0.376 0.202 0.000 0.000 chr5 146108034 146187650
LARS2 120 30 90 55 0 0 0.465 0.116 0.349 0.213 0.000 0.000 chr3 45383576 45554407
LAS1L 36 5 214 97 0 0 0.140 0.019 0.829 0.376 0.000 0.000 chrX 65507582 65539787
LASP1NB 210 77 48 28 0 0 0.814 0.298 0.186 0.109 0.000 0.000 chr17 38920614 38934381
LASP1 197 56 48 38 0 0 0.764 0.217 0.186 0.147 0.000 0.000 chr17 38865058 38926770
LAT2 171 41 71 51 0 0 0.663 0.159 0.275 0.198 0.000 0.000 chr7 74205006 74234834
LATS1 135 43 106 54 0 0 0.523 0.167 0.411 0.209 0.000 0.000 chr6 149653153 149723101
LATS2 157 52 63 34 0 0 0.609 0.202 0.244 0.132 0.000 0.000 chr13 20968036 21066586
LAT 216 77 39 25 0 0 0.837 0.298 0.151 0.097 0.000 0.000 chr16 28980052 28995784
LAX1 210 76 44 25 0 0 0.814 0.295 0.171 0.097 0.000 0.000 chr1 203760183 203781372
LAYN 148 30 96 66 0 0 0.574 0.116 0.372 0.256 0.000 0.000 chr11 111535720 111566745
LBHD1 179 49 77 54 0 0 0.694 0.190 0.298 0.209 0.000 0.000 chr11 62657817 62677267
LBHD2 215 72 39 29 0 0 0.833 0.279 0.151 0.112 0.000 0.000 chr14 103079210 103095027
LBH 197 72 48 25 0 0 0.764 0.279 0.186 0.097 0.000 0.000 chr2 30226534 30265028
LBP 196 65 57 38 0 0 0.760 0.252 0.221 0.147 0.000 0.000 chr20 38341482 38382013
LBR 168 51 72 45 0 0 0.651 0.198 0.279 0.174 0.000 0.000 chr1 225396502 225433038
LBX1 215 76 42 28 0 0 0.833 0.295 0.163 0.109 0.000 0.000 chr10 101221994 101234463
LBX2 178 44 75 57 1 0 0.690 0.171 0.291 0.221 0.004 0.000 chr2 74492517 74504603
LCA5L 169 55 75 41 0 0 0.655 0.213 0.291 0.159 0.000 0.000 chr21 39400728 39450778
LCA5 199 73 56 31 0 0 0.771 0.283 0.217 0.120 0.000 0.000 chr6 79479991 79542430