Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LCAT 151 41 100 61 1 0 0.585 0.159 0.388 0.236 0.004 0.000 chr16 67934750 67949120
LCE1A 206 74 50 31 2 0 0.798 0.287 0.194 0.120 0.008 0.000 chr1 152822473 152833097
LCE1B 219 83 37 21 2 1 0.849 0.322 0.143 0.081 0.008 0.004 chr1 152806971 152818108
LCE1C 210 76 46 29 1 0 0.814 0.295 0.178 0.112 0.004 0.000 chr1 152799832 152811651
LCE1D 189 68 68 37 1 0 0.733 0.264 0.264 0.143 0.004 0.000 chr1 152791721 152803181
LCE1E 204 72 51 32 1 0 0.791 0.279 0.198 0.124 0.004 0.000 chr1 152781257 152793426
LCE1F 218 76 38 27 0 0 0.845 0.295 0.147 0.105 0.000 0.000 chr1 152770140 152782024
LCE2A 202 66 54 39 1 0 0.783 0.256 0.209 0.151 0.004 0.000 chr1 152693345 152704442
LCE2B 222 79 33 24 1 0 0.860 0.306 0.128 0.093 0.004 0.000 chr1 152681123 152692397
LCE2C 212 70 43 32 0 0 0.822 0.271 0.167 0.124 0.000 0.000 chr1 152670279 152681569
LCE2D 186 50 69 52 0 0 0.721 0.194 0.267 0.202 0.000 0.000 chr1 152658380 152669659
LCE3A 204 75 52 28 0 0 0.791 0.291 0.202 0.109 0.000 0.000 chr1 152617834 152628103
LCE3B 129 41 110 50 0 0 0.500 0.159 0.426 0.194 0.000 0.000 chr1 152608811 152619098
LCE3C 28 9 142 54 0 0 0.109 0.035 0.550 0.209 0.000 0.000 chr1 152595234 152606086
LCE3D 170 49 81 51 0 0 0.659 0.190 0.314 0.198 0.000 0.000 chr1 152574381 152585516
LCE3E 230 89 27 15 0 0 0.891 0.345 0.105 0.058 0.000 0.000 chr1 152560654 152571780
LCE4A 207 74 51 31 0 0 0.802 0.287 0.198 0.120 0.000 0.000 chr1 152703160 152714434
LCE5A 216 77 39 26 2 1 0.837 0.298 0.151 0.101 0.008 0.004 chr1 152505803 152517177
LCE6A 199 72 55 29 0 0 0.771 0.279 0.213 0.112 0.000 0.000 chr1 152837856 152848983
LCE7A 198 71 58 33 0 0 0.767 0.275 0.225 0.128 0.000 0.000 chr1 152854996 152866252
LCK 136 20 97 66 0 0 0.527 0.078 0.376 0.256 0.000 0.000 chr1 32246265 32291165
LCLAT1 182 58 52 31 0 0 0.705 0.225 0.202 0.120 0.000 0.000 chr2 30442246 30649225
LCMT1 173 53 65 44 0 0 0.671 0.205 0.252 0.171 0.000 0.000 chr16 25106742 25183228
LCMT2 204 75 51 29 0 0 0.791 0.291 0.198 0.112 0.000 0.000 chr15 43318649 43335573
LCN10 195 51 55 47 0 0 0.756 0.198 0.213 0.182 0.000 0.000 chr9 136733170 136747940
LCN12 190 52 62 49 1 0 0.736 0.202 0.240 0.190 0.004 0.000 chr9 136947273 136960497
LCN15 177 44 70 51 0 0 0.686 0.171 0.271 0.198 0.000 0.000 chr9 136754634 136769518
LCN1 217 72 37 30 1 0 0.841 0.279 0.143 0.116 0.004 0.000 chr9 135516440 135531540
LCN2 205 72 45 26 0 0 0.795 0.279 0.174 0.101 0.000 0.000 chr9 128144453 128158453
LCN6 197 53 56 47 0 0 0.764 0.205 0.217 0.182 0.000 0.000 chr9 136739017 136753525
LCN8 183 48 65 48 1 0 0.709 0.186 0.252 0.186 0.004 0.000 chr9 136749386 136763243
LCN9 211 70 42 30 0 0 0.818 0.271 0.163 0.116 0.000 0.000 chr9 135658309 135671961
LCNL1 190 55 61 43 0 0 0.736 0.213 0.236 0.167 0.000 0.000 chr9 136977993 136990758
LCORL 145 46 84 44 0 0 0.562 0.178 0.326 0.171 0.000 0.000 chr4 17836187 18026755
LCOR 143 54 95 40 0 0 0.554 0.209 0.368 0.155 0.000 0.000 chr10 96827298 97000956
LCP1 190 61 47 27 0 0 0.736 0.236 0.182 0.105 0.000 0.000 chr13 46120923 46187177
LCP2 191 55 44 34 0 0 0.740 0.213 0.171 0.132 0.000 0.000 chr5 170241233 170302777
LCTL 216 80 37 21 0 0 0.837 0.310 0.143 0.081 0.000 0.000 chr15 66542532 66570998
LCT 182 65 67 34 0 0 0.705 0.252 0.260 0.132 0.000 0.000 chr2 135782850 135842184
LDAF1 194 64 54 32 0 0 0.752 0.248 0.209 0.124 0.000 0.000 chr16 21153674 21185616
LDAH 128 27 90 57 0 0 0.496 0.105 0.349 0.221 0.000 0.000 chr2 20679031 20828101
LDB1 187 58 61 37 0 0 0.725 0.225 0.236 0.143 0.000 0.000 chr10 102101489 102125368
LDB2 80 13 88 46 0 0 0.310 0.050 0.341 0.178 0.000 0.000 chr4 16496541 16903645
LDB3 205 65 45 33 0 0 0.795 0.252 0.174 0.128 0.000 0.000 chr10 86663511 86705050
LDB3 165 42 65 47 0 0 0.640 0.163 0.252 0.182 0.000 0.000 chr10 86663511 86741072
LDHAL6A 209 72 42 27 0 0 0.810 0.279 0.163 0.105 0.000 0.000 chr11 18450856 18484601
LDHAL6B 223 80 32 23 1 0 0.864 0.310 0.124 0.089 0.004 0.000 chr15 59201843 59213588
LDHA 194 64 58 35 0 0 0.752 0.248 0.225 0.136 0.000 0.000 chr11 18389563 18413425
LDHB 162 39 88 59 0 0 0.628 0.151 0.341 0.229 0.000 0.000 chr12 21630342 21662842
LDHC 173 61 75 40 0 0 0.671 0.236 0.291 0.155 0.000 0.000 chr11 18407318 18457063