Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LDHD 228 83 26 21 2 0 0.884 0.322 0.101 0.081 0.008 0.000 chr16 75106864 75121780
LDLRAD1 199 73 53 28 2 0 0.771 0.283 0.205 0.109 0.008 0.000 chr1 54002298 54023186
LDLRAD2 226 76 29 26 0 0 0.876 0.295 0.112 0.101 0.000 0.000 chr1 21807265 21830225
LDLRAD3 117 23 64 41 0 0 0.453 0.089 0.248 0.159 0.000 0.000 chr11 35939062 36237136
LDLRAD4 88 19 89 48 0 0 0.341 0.074 0.345 0.186 0.000 0.000 chr18 13213760 13657751
LDLRAP1 181 52 61 40 0 0 0.702 0.202 0.236 0.155 0.000 0.000 chr1 25538606 25573886
LDLR 178 59 59 30 0 0 0.690 0.229 0.229 0.116 0.000 0.000 chr19 11084463 11138820
LDOC1 103 28 152 74 0 0 0.399 0.109 0.589 0.287 0.000 0.000 chrX 141168235 141182129
LEAP2 217 81 39 23 1 0 0.841 0.314 0.151 0.089 0.004 0.000 chr5 132868668 132880046
LECT2 225 96 32 9 0 0 0.872 0.372 0.124 0.035 0.000 0.000 chr5 135941904 135959983
LEF1 131 31 95 60 0 0 0.508 0.120 0.368 0.233 0.000 0.000 chr4 108042548 108173932
LEFTY1 226 86 30 17 0 0 0.876 0.333 0.116 0.066 0.000 0.000 chr1 225881282 225894146
LEFTY2 226 82 28 19 0 0 0.876 0.318 0.109 0.074 0.000 0.000 chr1 225931603 225946220
LEKR1 121 31 103 56 0 0 0.469 0.120 0.399 0.217 0.000 0.000 chr3 156821353 157051129
LELP1 231 89 26 15 0 0 0.895 0.345 0.101 0.058 0.000 0.000 chr1 153198430 153210120
LEMD1 194 58 56 40 0 0 0.752 0.225 0.217 0.155 0.000 0.000 chr1 205376378 205427056
LEMD2 199 64 50 35 0 0 0.771 0.248 0.194 0.136 0.000 0.000 chr6 33766213 33794130
LEMD3 198 81 41 17 0 0 0.767 0.314 0.159 0.066 0.000 0.000 chr12 65164583 65253355
LENEP 153 31 98 69 0 0 0.593 0.120 0.380 0.267 0.000 0.000 chr1 154988586 154999315
LENG1 210 69 44 33 0 0 0.814 0.267 0.171 0.128 0.000 0.000 chr19 54150161 54164721
LENG8 215 73 40 29 0 0 0.833 0.283 0.155 0.112 0.000 0.000 chr19 54444199 54467016
LENG9 210 67 42 32 0 0 0.814 0.260 0.163 0.124 0.000 0.000 chr19 54456732 54468778
LEO1 193 69 57 33 0 0 0.748 0.267 0.221 0.128 0.000 0.000 chr15 51933025 51976778
LEPROTL1 207 79 46 23 1 0 0.802 0.306 0.178 0.089 0.004 0.000 chr8 30090408 30113524
LEPROT 200 59 55 43 0 0 0.775 0.229 0.213 0.167 0.000 0.000 chr1 65415668 65441007
LEPR 107 14 97 60 0 0 0.415 0.054 0.376 0.233 0.000 0.000 chr1 65415668 65646559
LEP 197 55 53 44 0 0 0.764 0.213 0.205 0.171 0.000 0.000 chr7 128236278 128262629
LETM1 99 16 127 74 0 0 0.384 0.062 0.492 0.287 0.000 0.000 chr4 1806479 1861156
LETM2 181 66 66 32 0 0 0.702 0.256 0.256 0.124 0.000 0.000 chr8 38381476 38414527
LETMD1 207 73 45 26 0 0 0.802 0.283 0.174 0.101 0.000 0.000 chr12 51043327 51065424
LEUTX 237 94 21 11 0 0 0.919 0.364 0.081 0.043 0.000 0.000 chr19 39773854 39791291
LEXM 190 69 58 28 0 0 0.736 0.267 0.225 0.109 0.000 0.000 chr1 54801063 54847252
LFNG 206 64 46 36 0 0 0.798 0.248 0.178 0.140 0.000 0.000 chr7 2514774 2533429
LGALS12 217 76 39 28 0 0 0.841 0.295 0.151 0.109 0.000 0.000 chr11 63501084 63521772
LGALS13 222 89 36 16 0 0 0.860 0.345 0.140 0.062 0.000 0.000 chr19 39597524 39612474
LGALS14 225 86 31 18 2 1 0.872 0.333 0.120 0.070 0.008 0.004 chr19 39699481 39714444
LGALS16 220 85 34 19 3 0 0.853 0.329 0.132 0.074 0.012 0.000 chr19 39650913 39665647
LGALS1 209 73 43 28 1 0 0.810 0.283 0.167 0.109 0.004 0.000 chr22 37670636 37684802
LGALS2 229 84 24 16 0 0 0.888 0.326 0.093 0.062 0.000 0.000 chr22 37565248 37585087
LGALS3BP 227 83 28 19 0 0 0.880 0.322 0.109 0.074 0.000 0.000 chr17 78966255 78984923
LGALS3 187 69 63 30 0 0 0.725 0.267 0.244 0.116 0.000 0.000 chr14 55124252 55150423
LGALS4 212 75 41 27 0 0 0.822 0.291 0.159 0.105 0.000 0.000 chr19 38796674 38817945
LGALS7B 0 0 2 2 0 0 0.000 0.000 0.008 0.008 0.000 0.000 chr19 38784200 38796754
LGALS7 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr19 38765968 38778517
LGALS8 224 86 27 12 1 1 0.868 0.333 0.105 0.047 0.004 0.004 chr1 236518982 236557981
LGALS9B 216 72 33 26 1 0 0.837 0.279 0.128 0.101 0.004 0.000 chr17 20444395 20472539
LGALS9C 145 62 66 30 30 5 0.562 0.240 0.256 0.116 0.116 0.019 chr17 18471789 18499945
LGALS9 222 81 33 21 0 0 0.860 0.314 0.128 0.081 0.000 0.000 chr17 27626188 27654560
LGALSL 210 75 47 29 0 0 0.814 0.291 0.182 0.112 0.000 0.000 chr2 64449162 64466381
LGI1 187 62 59 35 0 0 0.725 0.240 0.229 0.136 0.000 0.000 chr10 93752936 93803159