Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LGI2 226 84 27 17 0 0 0.876 0.326 0.105 0.066 0.000 0.000 chr4 24993847 25035946
LGI3 203 59 43 35 0 0 0.787 0.229 0.167 0.136 0.000 0.000 chr8 22141830 22161806
LGI4 198 64 56 40 1 0 0.767 0.248 0.217 0.155 0.004 0.000 chr19 35119513 35140059
LGMN 209 69 40 27 0 0 0.810 0.267 0.155 0.105 0.000 0.000 chr14 92698809 92753627
LGR4 121 39 94 43 0 0 0.469 0.151 0.364 0.167 0.000 0.000 chr11 27360961 27477790
LGR5 99 27 105 58 0 0 0.384 0.105 0.407 0.225 0.000 0.000 chr12 71434798 71591310
LGR6 130 34 84 46 0 0 0.504 0.132 0.326 0.178 0.000 0.000 chr1 202188799 202324761
LGSN 155 53 84 40 0 0 0.601 0.205 0.326 0.155 0.000 0.000 chr6 63270951 63324983
LHB 204 66 47 32 0 0 0.791 0.256 0.182 0.124 0.000 0.000 chr19 49010980 49022091
LHCGR 186 50 46 35 0 0 0.721 0.194 0.178 0.136 0.000 0.000 chr2 48681774 48760724
LHFPL1 58 10 189 88 0 0 0.225 0.039 0.733 0.341 0.000 0.000 chrX 112625648 112684938
LHFPL2 126 30 81 51 0 0 0.488 0.116 0.314 0.198 0.000 0.000 chr5 78480230 78653772
LHFPL3 43 6 78 40 0 0 0.167 0.023 0.302 0.155 0.000 0.000 chr7 104323603 104913561
LHFPL4 179 57 63 42 0 0 0.694 0.221 0.244 0.163 0.000 0.000 chr3 9493361 9558822
LHFPL5 192 61 60 39 0 0 0.744 0.236 0.233 0.151 0.000 0.000 chr6 35800352 35829070
LHFPL6 121 36 62 36 0 0 0.469 0.140 0.240 0.140 0.000 0.000 chr13 39337892 39608193
LHFPL7 209 75 47 28 0 0 0.810 0.291 0.182 0.109 0.000 0.000 chr22 24930098 24951694
LHPP 129 35 69 31 0 0 0.500 0.136 0.267 0.120 0.000 0.000 chr10 124456823 124619141
LHX1 192 63 63 39 1 1 0.744 0.244 0.244 0.151 0.004 0.004 chr17 36932475 36949612
LHX2 200 65 41 26 0 0 0.775 0.252 0.159 0.101 0.000 0.000 chr9 124006768 124038301
LHX3 218 74 31 22 1 1 0.845 0.287 0.120 0.085 0.004 0.004 chr9 136191250 136210128
LHX4 200 67 39 24 0 0 0.775 0.260 0.151 0.093 0.000 0.000 chr1 180225264 180283984
LHX5 197 65 53 33 0 0 0.764 0.252 0.205 0.128 0.000 0.000 chr12 113457033 113476871
LHX6 218 78 35 23 0 0 0.845 0.302 0.136 0.089 0.000 0.000 chr9 122197582 122233957
LHX8 156 26 88 69 0 0 0.605 0.101 0.341 0.267 0.000 0.000 chr1 75129388 75166533
LHX9 209 80 47 23 0 0 0.810 0.310 0.182 0.089 0.000 0.000 chr1 197912372 197940478
LIAS 211 74 40 27 0 0 0.818 0.287 0.155 0.105 0.000 0.000 chr4 39454056 39484506
LIAT1 216 70 40 33 0 0 0.837 0.271 0.155 0.128 0.000 0.000 chr17 405325 419666
LIFR 186 68 61 32 0 0 0.721 0.264 0.236 0.124 0.000 0.000 chr5 38469668 38561646
LIF 212 68 40 31 0 0 0.822 0.264 0.155 0.120 0.000 0.000 chr22 30235453 30251759
LIG1 164 49 77 43 0 0 0.636 0.190 0.298 0.167 0.000 0.000 chr19 48110445 48175344
LIG3 211 75 37 22 0 0 0.818 0.291 0.143 0.085 0.000 0.000 chr17 34975512 35014743
LIG4 186 58 68 43 0 0 0.721 0.225 0.264 0.167 0.000 0.000 chr13 108202442 108220536
LILRA1 226 82 29 21 1 0 0.876 0.318 0.112 0.081 0.004 0.000 chr19 54588632 54607381
LILRA2 213 69 41 32 0 0 0.826 0.267 0.159 0.124 0.000 0.000 chr19 54568790 54595287
LILRA4 235 84 19 17 1 1 0.911 0.326 0.074 0.066 0.004 0.004 chr19 54328185 54344162
LILRA5 204 64 49 36 0 0 0.791 0.248 0.190 0.140 0.000 0.000 chr19 54302070 54318166
LILRA6 224 86 34 19 0 0 0.868 0.333 0.132 0.074 0.000 0.000 chr19 54231590 54247790
LILRB1 217 78 37 24 1 0 0.841 0.302 0.143 0.093 0.004 0.000 chr19 54625484 54643022
LILRB2 214 67 37 32 3 2 0.829 0.260 0.143 0.124 0.012 0.008 chr19 54268812 54286110
LILRB3 227 86 31 19 0 0 0.880 0.333 0.120 0.074 0.000 0.000 chr19 54211278 54228007
LILRB4 243 93 14 11 0 0 0.942 0.360 0.054 0.043 0.000 0.000 chr19 54657985 54673718
LILRB5 237 90 20 14 0 0 0.919 0.349 0.078 0.054 0.000 0.000 chr19 54244421 54262273
LIM2 218 71 35 30 0 0 0.845 0.275 0.136 0.116 0.000 0.000 chr19 51374909 51392974
LIMA1 146 43 77 44 0 0 0.566 0.167 0.298 0.171 0.000 0.000 chr12 50170788 50288520
LIMCH1 76 8 123 70 0 0 0.295 0.031 0.477 0.271 0.000 0.000 chr4 41533157 41705044
LIMD1 178 55 65 40 0 0 0.690 0.213 0.252 0.155 0.000 0.000 chr3 45589751 45691341
LIMD2 195 67 61 38 1 0 0.756 0.260 0.236 0.147 0.004 0.000 chr17 63690888 63705125
LIME1 196 63 55 35 1 1 0.760 0.244 0.213 0.136 0.004 0.004 chr20 63731664 63744103
LIMK1 150 41 85 49 0 0 0.581 0.159 0.329 0.190 0.000 0.000 chr7 74078804 74127525