Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LIMK2 178 66 72 34 1 1 0.690 0.256 0.279 0.132 0.004 0.004 chr22 31207298 31285080
LIMS1 122 30 124 70 0 0 0.473 0.116 0.481 0.271 0.000 0.000 chr2 108529470 108692246
LIMS2 173 40 71 53 0 0 0.671 0.155 0.275 0.205 0.000 0.000 chr2 127633426 127680530
LIMS3 11 0 26 0 0 0 0.043 0.000 0.101 0.000 0.000 0.000 chr2 109893688 109930625
LIMS4 45 11 149 57 4 0 0.174 0.043 0.578 0.221 0.016 0.000 chr2 110440883 110477816
LIN28A 187 51 62 45 0 0 0.725 0.198 0.240 0.174 0.000 0.000 chr1 26405817 26434728
LIN28B 138 44 86 45 0 0 0.535 0.171 0.333 0.174 0.000 0.000 chr6 104952107 105088332
LIN37 203 69 49 31 1 1 0.787 0.267 0.190 0.120 0.004 0.004 chr19 35743576 35759519
LIN52 176 55 67 44 0 0 0.682 0.213 0.260 0.171 0.000 0.000 chr14 74079956 74206493
LIN54 151 57 92 43 0 0 0.585 0.221 0.357 0.167 0.000 0.000 chr4 82919603 83015823
LIN7A 145 36 70 43 0 0 0.562 0.140 0.271 0.167 0.000 0.000 chr12 80787520 80942934
LIN7B 187 53 69 52 2 0 0.725 0.205 0.267 0.202 0.008 0.000 chr19 49109370 49123460
LIN7C 202 80 51 21 0 0 0.783 0.310 0.198 0.081 0.000 0.000 chr11 27489418 27511769
LIN9 181 63 60 32 0 0 0.702 0.244 0.233 0.124 0.000 0.000 chr1 226226157 226314164
LINGO1 192 57 54 38 1 1 0.744 0.221 0.209 0.147 0.004 0.004 chr15 77608027 77637912
LINGO2 31 4 91 39 0 0 0.120 0.016 0.353 0.151 0.000 0.000 chr9 27932617 29218601
LINGO3 208 68 42 30 0 0 0.806 0.264 0.163 0.116 0.000 0.000 chr19 2282164 2313154
LINGO4 216 79 39 25 0 0 0.837 0.306 0.151 0.097 0.000 0.000 chr1 151795264 151810419
LINS1 214 75 42 29 0 0 0.829 0.291 0.163 0.112 0.000 0.000 chr15 100561924 100607184
LIPA 191 62 51 33 0 0 0.740 0.240 0.198 0.128 0.000 0.000 chr10 89208572 89256775
LIPC 178 54 42 26 0 0 0.690 0.209 0.163 0.101 0.000 0.000 chr15 58426991 58574844
LIPE 113 15 121 75 0 0 0.438 0.058 0.469 0.291 0.000 0.000 chr19 42396514 42432388
LIPF 206 71 48 31 0 0 0.798 0.275 0.186 0.120 0.000 0.000 chr10 88659442 88683814
LIPG 191 56 57 40 0 0 0.740 0.217 0.221 0.155 0.000 0.000 chr18 49557057 49604185
LIPH 178 62 67 36 0 0 0.690 0.240 0.260 0.140 0.000 0.000 chr3 185501262 185557588
LIPI 180 60 56 36 0 0 0.698 0.233 0.217 0.140 0.000 0.000 chr21 14103813 14215955
LIPJ 204 71 50 32 0 0 0.791 0.275 0.194 0.124 0.000 0.000 chr10 88581762 88611976
LIPK 174 60 76 42 0 0 0.674 0.233 0.295 0.163 0.000 0.000 chr10 88701249 88757776
LIPM 230 90 24 12 0 0 0.891 0.349 0.093 0.047 0.000 0.000 chr10 88797730 88825546
LIPN 196 66 54 34 1 1 0.760 0.256 0.209 0.132 0.004 0.004 chr10 88755020 88784626
LIPT1 202 63 50 37 1 1 0.783 0.244 0.194 0.143 0.004 0.004 chr2 99149967 99168137
LIPT2 209 73 46 29 0 0 0.810 0.283 0.178 0.112 0.000 0.000 chr11 74485519 74498724
LITAFD 202 66 53 36 1 1 0.783 0.256 0.205 0.140 0.004 0.004 chr16 8877351 8890350
LITAF 205 70 44 30 0 0 0.795 0.271 0.171 0.116 0.000 0.000 chr16 11542722 11591919
LIX1L 157 46 86 51 0 0 0.609 0.178 0.333 0.198 0.000 0.000 chr1 145928423 145963017
LIX1 177 62 64 33 1 1 0.686 0.240 0.248 0.128 0.004 0.004 chr5 97086867 97147611
LKAAEAR1 50 13 103 44 0 0 0.194 0.050 0.399 0.171 0.000 0.000 chr20 64078376 64089398
LLCFC1 138 25 117 77 0 0 0.535 0.097 0.453 0.298 0.000 0.000 chr7 142934484 142945868
LLGL1 221 82 32 21 0 0 0.857 0.318 0.124 0.081 0.000 0.000 chr17 18220635 18249875
LLGL2 190 54 49 36 0 0 0.736 0.209 0.190 0.140 0.000 0.000 chr17 75520697 75580209
LLPH 181 59 73 43 1 1 0.702 0.229 0.283 0.167 0.004 0.004 chr12 66111555 66135750
LMAN1L 203 71 51 31 0 0 0.787 0.275 0.198 0.120 0.000 0.000 chr15 74807835 74830754
LMAN1 192 73 59 26 0 0 0.744 0.283 0.229 0.101 0.000 0.000 chr18 59322823 59364265
LMAN2L 133 37 108 53 0 0 0.516 0.143 0.419 0.205 0.000 0.000 chr2 96700929 96745064
LMAN2 187 56 60 40 0 0 0.725 0.217 0.233 0.155 0.000 0.000 chr5 177326567 177356668
LMBR1L 189 67 63 32 1 1 0.733 0.260 0.244 0.124 0.004 0.004 chr12 49092139 49115847
LMBR1 156 55 69 34 0 0 0.605 0.213 0.267 0.132 0.000 0.000 chr7 156672791 156898183
LMBRD1 173 58 71 38 0 0 0.671 0.225 0.275 0.147 0.000 0.000 chr6 69669010 69802010
LMBRD2 180 62 62 38 0 0 0.698 0.240 0.240 0.147 0.000 0.000 chr5 36093407 36156887
LMCD1 156 39 71 47 0 0 0.605 0.151 0.275 0.182 0.000 0.000 chr3 8496823 8579668