Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LMF1 146 34 65 36 0 0 0.566 0.132 0.252 0.140 0.000 0.000 chr16 848634 975984
LMF2 206 61 48 40 0 0 0.798 0.236 0.186 0.155 0.000 0.000 chr22 50497949 50512702
LMLN 128 29 106 64 0 0 0.496 0.112 0.411 0.248 0.000 0.000 chr3 197955217 198048720
LMNA 142 33 101 63 0 0 0.550 0.128 0.391 0.244 0.000 0.000 chr1 156109711 156142866
LMNA 142 35 99 63 0 0 0.550 0.136 0.384 0.244 0.000 0.000 chr1 156109711 156145081
LMNB1 186 65 55 27 0 0 0.721 0.252 0.213 0.105 0.000 0.000 chr5 126772136 126842020
LMNB2 177 49 61 38 0 0 0.686 0.190 0.236 0.147 0.000 0.000 chr19 2423166 2461959
LMNTD1 193 67 46 22 0 0 0.748 0.260 0.178 0.085 0.000 0.000 chr12 25471082 25558283
LMNTD2 193 50 54 44 1 1 0.748 0.194 0.209 0.171 0.004 0.004 chr11 549850 565738
LMO1 211 73 32 21 0 0 0.818 0.283 0.124 0.081 0.000 0.000 chr11 8219309 8268878
LMO2 220 76 31 24 0 0 0.853 0.295 0.120 0.093 0.000 0.000 chr11 33853576 33897076
LMO3 176 61 60 30 0 0 0.682 0.236 0.233 0.116 0.000 0.000 chr12 16543372 16611162
LMO4 195 61 58 40 1 0 0.756 0.236 0.225 0.155 0.004 0.000 chr1 87323880 87353923
LMO7 135 42 70 38 0 0 0.523 0.163 0.271 0.147 0.000 0.000 chr13 75631330 75864866
LMOD1 199 62 45 33 0 0 0.771 0.240 0.174 0.128 0.000 0.000 chr1 201891456 201951548
LMOD2 197 66 55 34 1 1 0.764 0.256 0.213 0.132 0.004 0.004 chr7 123650866 123669290
LMOD3 213 80 38 22 1 1 0.826 0.310 0.147 0.085 0.004 0.004 chr3 69101065 69127595
LMTK2 194 68 54 29 0 0 0.752 0.264 0.209 0.112 0.000 0.000 chr7 98101862 98214638
LMTK3 156 41 81 49 0 0 0.605 0.159 0.314 0.190 0.000 0.000 chr19 48480271 48516835
LMX1A 143 37 69 42 0 0 0.554 0.143 0.267 0.163 0.000 0.000 chr1 165196867 165361715
LMX1B 170 54 57 33 0 0 0.659 0.209 0.221 0.128 0.000 0.000 chr9 126608928 126706032
LNP1 198 70 50 29 0 0 0.767 0.271 0.194 0.112 0.000 0.000 chr3 100396539 100461319
LNPEP 175 64 67 35 0 0 0.678 0.248 0.260 0.136 0.000 0.000 chr5 96931080 97042513
LNPK 183 63 62 36 0 0 0.709 0.244 0.240 0.140 0.000 0.000 chr2 175918882 176007267
LNX1 177 57 53 33 0 0 0.686 0.221 0.205 0.128 0.000 0.000 chr4 53454301 53596486
LNX2 178 58 63 33 0 0 0.690 0.225 0.244 0.128 0.000 0.000 chr13 27540913 27625529
LOC100505841 168 37 75 57 0 0 0.651 0.143 0.291 0.221 0.000 0.000 chr5 122155176 122187658
LOC101059915 107 40 148 62 0 0 0.415 0.155 0.574 0.240 0.000 0.000 chrX 71662546 71676527
LOC101059948 200 62 51 37 0 0 0.775 0.240 0.198 0.143 0.000 0.000 chr19 49012968 49025549
LOC102723971 224 78 24 17 1 1 0.868 0.302 0.093 0.066 0.004 0.004 chr9 135609183 135624893
LOC102725191 210 72 38 23 0 0 0.814 0.279 0.147 0.089 0.000 0.000 chr7 12499441 12546270
LOC112267897 212 74 38 28 3 0 0.822 0.287 0.147 0.109 0.012 0.000 chr13 63741741 63753176
LOC112694756 165 50 82 48 0 0 0.640 0.194 0.318 0.186 0.000 0.000 chr16 30048151 30075414
LOC114841035 164 44 77 45 0 0 0.636 0.171 0.298 0.174 0.000 0.000 chr11 64236095 64249132
LOC122319436 219 75 34 27 2 0 0.849 0.291 0.132 0.105 0.008 0.000 chr2 222309148 222325155
LOC122319696 94 27 157 72 0 0 0.364 0.105 0.609 0.279 0.000 0.000 chrX 149409877 149420506
LOC122394732 208 70 43 30 0 0 0.806 0.271 0.167 0.116 0.000 0.000 chr9 87951214 87961883
LOC122455340 203 73 54 31 0 0 0.787 0.283 0.209 0.120 0.000 0.000 chr12 53236900 53247722
LOC122455342 219 69 37 34 0 0 0.849 0.267 0.143 0.132 0.000 0.000 chr17 76563797 76574648
LOC122513141 194 56 58 44 0 0 0.752 0.217 0.225 0.171 0.000 0.000 chr9 137212494 137224361
LOC122526780 213 75 43 28 1 1 0.826 0.291 0.167 0.109 0.004 0.004 chr17 6631780 6645316
LOC122539214 225 79 28 21 0 0 0.872 0.306 0.109 0.081 0.000 0.000 chr19 52645447 52695496
LOC127898562 210 74 44 28 1 1 0.814 0.287 0.171 0.109 0.004 0.004 chr13 77321905 77331988
LOC127898563 199 63 53 40 3 0 0.771 0.244 0.205 0.155 0.012 0.000 chr6 68630890 68640967
LOC127903862 214 75 42 28 0 0 0.829 0.291 0.163 0.109 0.000 0.000 chr6 16323342 16333431
LOC127933115 104 33 151 69 0 0 0.403 0.128 0.585 0.267 0.000 0.000 chrX 23778278 23788367
LOC128031832 201 59 53 42 0 0 0.779 0.229 0.205 0.163 0.000 0.000 chr1 31914563 31924628
LOC128031833 48 9 204 90 0 0 0.186 0.035 0.791 0.349 0.000 0.000 chrX 63749485 63759664
LOC128031834 178 56 80 49 0 0 0.690 0.217 0.310 0.190 0.000 0.000 chr3 88053139 88063216
LOC128031835 190 71 64 31 0 0 0.736 0.275 0.248 0.120 0.000 0.000 chr6 53060602 53070673