Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LOC128031836 198 72 58 31 1 1 0.767 0.279 0.225 0.120 0.004 0.004 chr1 203797094 203807192
LOC128031837 224 78 34 27 0 0 0.868 0.302 0.132 0.105 0.000 0.000 chr7 112445487 112455645
LOC128071544 227 84 30 20 0 0 0.880 0.326 0.116 0.078 0.000 0.000 chr1 147606590 147616796
LOC128071545 180 55 76 49 1 0 0.698 0.213 0.295 0.190 0.004 0.000 chr15 80997142 81007279
LOC128071547 203 65 51 38 2 1 0.787 0.252 0.198 0.147 0.008 0.004 chr12 120529697 120539957
LOC128092246 188 65 68 40 1 0 0.729 0.252 0.264 0.155 0.004 0.000 chr6 53036266 53046385
LOC128092247 208 69 44 31 0 0 0.806 0.267 0.171 0.120 0.000 0.000 chr7 151056928 151066978
LOC128092248 211 77 46 27 0 0 0.818 0.298 0.178 0.105 0.000 0.000 chr9 130708626 130718724
LOC128092249 209 68 48 36 0 0 0.810 0.264 0.186 0.140 0.000 0.000 chr21 46321288 46331491
LOC128092250 214 73 41 29 0 0 0.829 0.283 0.159 0.112 0.000 0.000 chr8 32642202 32652390
LOC128092251 203 72 54 33 1 0 0.787 0.279 0.209 0.128 0.004 0.000 chr1 89574592 89584654
LOC128092252 193 64 57 35 0 0 0.748 0.248 0.221 0.136 0.000 0.000 chr15 50643802 50691717
LOC128125814 162 43 91 57 1 1 0.628 0.167 0.353 0.221 0.004 0.004 chr12 57512712 57525480
LOC128125816 185 57 67 43 0 0 0.717 0.221 0.260 0.167 0.000 0.000 chr12 122221430 122231564
LOC128125818 230 87 26 17 1 0 0.891 0.337 0.101 0.066 0.004 0.000 chr4 6059977 6075162
LOC128462377 183 57 54 35 0 0 0.709 0.221 0.209 0.136 0.000 0.000 chr16 89312046 89423292
LOC128706665 203 72 48 27 0 0 0.787 0.279 0.186 0.105 0.000 0.000 chr20 10408708 10439222
LOC128706666 203 72 48 27 0 0 0.787 0.279 0.186 0.105 0.000 0.000 chr20 10408708 10439222
LOC128854680 200 66 52 35 1 0 0.775 0.256 0.202 0.136 0.004 0.000 chr10 75100669 75114157
LOC400499 154 38 69 46 0 0 0.597 0.147 0.267 0.178 0.000 0.000 chr16 11367015 11532247
LOC647264 220 76 35 27 2 1 0.853 0.295 0.136 0.105 0.008 0.004 chr13 63827361 63838053
LOC728392 214 77 41 27 1 0 0.829 0.298 0.159 0.105 0.004 0.000 chr17 5494427 5506006
LOC728743 215 74 40 29 0 0 0.833 0.287 0.155 0.112 0.000 0.000 chr7 150400676 150417470
LOC729966 226 83 29 20 1 0 0.876 0.322 0.112 0.078 0.004 0.000 chr19 18245034 18260362
LOC730098 188 57 65 43 0 0 0.729 0.221 0.252 0.167 0.000 0.000 chr9 34659163 34671045
LOC93622 230 84 28 21 0 0 0.891 0.326 0.109 0.081 0.000 0.000 chr4 6669075 6681047
LONP1 192 57 52 37 0 0 0.744 0.221 0.202 0.143 0.000 0.000 chr19 5686834 5725146
LONP2 76 3 154 95 0 0 0.295 0.012 0.597 0.368 0.000 0.000 chr16 48239300 48362349
LONRF1 201 73 43 24 0 0 0.779 0.283 0.167 0.093 0.000 0.000 chr8 12716906 12760526
LONRF2 183 55 54 37 0 0 0.709 0.213 0.209 0.143 0.000 0.000 chr2 100266875 100327501
LONRF3 91 30 162 71 0 0 0.353 0.116 0.628 0.275 0.000 0.000 chrX 118969618 119023355
LORICRIN 210 73 42 28 1 1 0.814 0.283 0.163 0.109 0.004 0.004 chr1 153254687 153267124
LOXHD1 134 35 62 37 0 0 0.519 0.136 0.240 0.143 0.000 0.000 chr18 46472273 46662220
LOXL1 223 79 27 20 0 0 0.864 0.306 0.105 0.078 0.000 0.000 chr15 73921462 73957136
LOXL2 173 45 51 39 0 0 0.671 0.174 0.198 0.151 0.000 0.000 chr8 23291897 23409120
LOXL3 165 57 89 44 0 0 0.640 0.221 0.345 0.171 0.000 0.000 chr2 74527258 74558942
LOXL4 218 79 34 23 0 0 0.845 0.306 0.132 0.089 0.000 0.000 chr10 98242690 98273194
LOX 161 42 91 58 0 0 0.624 0.163 0.353 0.225 0.000 0.000 chr5 122058195 122083259
LPAR1 150 42 60 36 0 0 0.581 0.163 0.233 0.140 0.000 0.000 chr9 110868263 111043470
LPAR2 208 68 47 36 2 0 0.806 0.264 0.182 0.140 0.008 0.000 chr19 19618655 19633220
LPAR3 190 63 48 33 0 0 0.736 0.244 0.186 0.128 0.000 0.000 chr1 84806602 84898206
LPAR4 97 27 158 75 0 0 0.376 0.105 0.612 0.291 0.000 0.000 chrX 78742720 78763714
LPAR5 202 65 44 28 0 0 0.783 0.252 0.171 0.109 0.000 0.000 chr12 6613835 6640959
LPAR6 201 77 56 27 1 1 0.779 0.298 0.217 0.105 0.004 0.004 chr13 48406138 48418113
LPA 73 8 91 33 0 0 0.283 0.031 0.353 0.128 0.000 0.000 chr6 160526482 160669275
LPCAT1 192 59 46 33 0 0 0.744 0.229 0.178 0.128 0.000 0.000 chr5 1456427 1528960
LPCAT2 156 45 68 39 0 0 0.605 0.174 0.264 0.151 0.000 0.000 chr16 55504072 55591666
LPCAT3 140 38 100 57 0 0 0.543 0.147 0.388 0.221 0.000 0.000 chr12 6971185 7023476
LPCAT4 224 79 28 20 0 0 0.868 0.306 0.109 0.078 0.000 0.000 chr15 34353633 34372196
LPGAT1 165 48 80 47 0 0 0.640 0.186 0.310 0.182 0.000 0.000 chr1 211738457 211835763