Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LPIN1 138 31 83 54 0 0 0.535 0.120 0.322 0.209 0.000 0.000 chr2 11741632 11832409
LPIN2 189 66 47 30 0 0 0.733 0.256 0.182 0.116 0.000 0.000 chr18 2911999 3018144
LPIN3 201 77 50 24 0 0 0.779 0.298 0.194 0.093 0.000 0.000 chr20 41335821 41365582
LPL 191 56 48 34 0 0 0.740 0.217 0.186 0.132 0.000 0.000 chr8 19934253 19972259
LPO 163 55 83 42 0 0 0.632 0.213 0.322 0.163 0.000 0.000 chr17 58233584 58273518
LPP 37 0 107 61 0 0 0.143 0.000 0.415 0.236 0.000 0.000 chr3 188149157 188895671
LPXN 163 54 82 44 0 0 0.632 0.209 0.318 0.171 0.000 0.000 chr11 58521871 58580856
LRATD1 205 68 52 36 0 0 0.795 0.264 0.202 0.140 0.000 0.000 chr2 14627717 14645041
LRATD2 216 84 39 20 0 0 0.837 0.326 0.151 0.078 0.000 0.000 chr8 126547443 126563478
LRAT 198 63 50 36 0 0 0.767 0.244 0.194 0.140 0.000 0.000 chr4 154739000 154758120
LRBA 89 25 111 53 0 0 0.345 0.097 0.430 0.205 0.000 0.000 chr4 150259435 151020284
LRCH1 136 37 76 41 0 0 0.527 0.143 0.295 0.159 0.000 0.000 chr13 46548170 46749898
LRCH2 56 8 181 85 0 0 0.217 0.031 0.702 0.329 0.000 0.000 chrX 115105616 115239096
LRCH3 145 32 88 55 0 0 0.562 0.124 0.341 0.213 0.000 0.000 chr3 197786254 197893436
LRCH4 184 53 67 45 0 0 0.713 0.205 0.260 0.174 0.000 0.000 chr7 100569011 100591129
LRCOL1 194 59 56 38 0 0 0.752 0.229 0.217 0.147 0.000 0.000 chr12 132598151 132615582
LRFN1 138 36 106 59 0 0 0.535 0.140 0.411 0.229 0.000 0.000 chr19 39301566 39325863
LRFN2 113 32 76 41 0 0 0.438 0.124 0.295 0.159 0.000 0.000 chr6 40386591 40592364
LRFN3 208 74 47 29 0 0 0.806 0.287 0.182 0.112 0.000 0.000 chr19 35931374 35951624
LRFN4 193 72 60 29 0 0 0.748 0.279 0.233 0.112 0.000 0.000 chr11 66852064 66865475
LRFN5 139 34 76 44 0 0 0.539 0.132 0.295 0.171 0.000 0.000 chr14 41601876 41909549
LRG1 209 64 43 35 0 0 0.810 0.248 0.167 0.136 0.000 0.000 chr19 4531402 4545036
LRGUK 109 36 107 45 0 0 0.422 0.140 0.415 0.174 0.000 0.000 chr7 134122340 134269595
LRIF1 222 86 33 17 0 0 0.860 0.333 0.128 0.066 0.000 0.000 chr1 110942190 110968922
LRIG1 131 32 91 53 0 0 0.508 0.124 0.353 0.205 0.000 0.000 chr3 66373797 66506022
LRIG2 133 31 93 54 0 0 0.516 0.120 0.360 0.209 0.000 0.000 chr1 113068198 113137260
LRIG3 138 40 97 53 0 0 0.535 0.155 0.376 0.205 0.000 0.000 chr12 58867155 58925504
LRIT1 209 73 47 32 0 0 0.810 0.283 0.182 0.124 0.000 0.000 chr10 84226520 84246546
LRIT2 208 70 45 31 1 0 0.806 0.271 0.174 0.120 0.004 0.000 chr10 84215571 84230544
LRIT3 165 56 80 39 0 0 0.640 0.217 0.310 0.151 0.000 0.000 chr4 109843107 109877315
LRMDA 23 0 114 52 0 0 0.089 0.000 0.442 0.202 0.000 0.000 chr10 75426624 76565168
LRP10 183 50 68 48 1 1 0.709 0.194 0.264 0.186 0.004 0.004 chr14 22866740 22886713
LRP11 166 52 68 38 0 0 0.643 0.202 0.264 0.147 0.000 0.000 chr6 149813757 149869359
LRP12 158 49 72 38 0 0 0.612 0.190 0.279 0.147 0.000 0.000 chr8 104484236 104594258
LRP1B 14 0 116 53 0 0 0.054 0.000 0.450 0.205 0.000 0.000 chr2 140226423 142136016
LRP1 137 35 88 49 0 0 0.531 0.136 0.341 0.190 0.000 0.000 chr12 57123483 57218361
LRP2BP 173 47 69 44 0 0 0.671 0.182 0.267 0.171 0.000 0.000 chr4 185358872 185400924
LRP2 124 31 75 40 0 0 0.481 0.120 0.291 0.155 0.000 0.000 chr2 169122109 169367534
LRP3 205 66 50 36 1 1 0.795 0.256 0.194 0.140 0.004 0.004 chr19 33189330 33213864
LRP4 137 39 108 60 0 0 0.531 0.151 0.419 0.233 0.000 0.000 chr11 46851717 46923550
LRP5 105 24 103 52 0 0 0.407 0.093 0.399 0.202 0.000 0.000 chr11 68307591 68454275
LRP6 130 34 107 58 0 0 0.504 0.132 0.415 0.225 0.000 0.000 chr12 12111025 12272044
LRP8 147 40 70 40 0 0 0.570 0.155 0.271 0.155 0.000 0.000 chr1 53237364 53333070
LRPAP1 209 67 32 23 0 0 0.810 0.260 0.124 0.089 0.000 0.000 chr4 3498612 3537422
LRPPRC 178 61 58 32 0 0 0.690 0.236 0.225 0.124 0.000 0.000 chr2 43881224 44000989
LRR1 155 34 98 66 0 0 0.601 0.132 0.380 0.256 0.000 0.000 chr14 49593940 49619672
LRRC10B 205 68 50 34 0 0 0.795 0.264 0.194 0.132 0.000 0.000 chr11 61503749 61516018
LRRC10 214 79 41 23 0 0 0.829 0.306 0.159 0.089 0.000 0.000 chr12 69603564 69615907
LRRC14B 234 86 23 18 1 1 0.907 0.333 0.089 0.070 0.004 0.004 chr5 186495 201334
LRRC14 206 68 43 28 1 1 0.798 0.264 0.167 0.109 0.004 0.004 chr8 144512992 144530172