Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LRRC15 178 50 69 46 0 0 0.690 0.194 0.267 0.178 0.000 0.000 chr3 194350249 194374743
LRRC17 198 73 53 27 0 0 0.767 0.283 0.205 0.105 0.000 0.000 chr7 102908000 102950111
LRRC18 209 73 44 28 0 0 0.810 0.283 0.171 0.109 0.000 0.000 chr10 48904480 48944840
LRRC19 194 55 58 44 0 0 0.752 0.213 0.225 0.171 0.000 0.000 chr9 26988136 27010672
LRRC1 184 58 57 37 0 0 0.713 0.225 0.221 0.143 0.000 0.000 chr6 53790005 53929125
LRRC20 188 57 50 38 0 0 0.729 0.221 0.194 0.147 0.000 0.000 chr10 70293975 70387625
LRRC23 157 48 82 44 0 0 0.609 0.186 0.318 0.171 0.000 0.000 chr12 6899822 6919229
LRRC24 198 55 43 34 1 0 0.767 0.213 0.167 0.132 0.004 0.000 chr8 144517388 144532033
LRRC25 216 77 40 26 0 0 0.837 0.298 0.155 0.101 0.000 0.000 chr19 18386137 18402622
LRRC26 201 57 48 41 1 0 0.779 0.221 0.186 0.159 0.004 0.000 chr9 137163758 137175051
LRRC27 144 38 67 37 0 0 0.558 0.147 0.260 0.143 0.000 0.000 chr10 132327193 132386508
LRRC28 165 57 64 34 0 0 0.640 0.221 0.248 0.132 0.000 0.000 chr15 99246481 99395729
LRRC2 181 56 56 33 0 0 0.702 0.217 0.217 0.128 0.000 0.000 chr3 46510385 46571302
LRRC30 227 84 31 21 0 0 0.880 0.326 0.120 0.081 0.000 0.000 chr18 7226089 7237044
LRRC31 160 45 79 43 0 0 0.620 0.174 0.306 0.167 0.000 0.000 chr3 169834172 169874935
LRRC32 226 80 29 23 1 0 0.876 0.310 0.112 0.089 0.004 0.000 chr11 76652524 76675747
LRRC34 160 56 93 46 0 0 0.620 0.217 0.360 0.178 0.000 0.000 chr3 169788003 169817904
LRRC36 96 8 140 83 0 0 0.372 0.031 0.543 0.322 0.000 0.000 chr16 67321815 67390204
LRRC37A2 54 6 116 43 9 0 0.209 0.023 0.450 0.167 0.035 0.000 chr17 46507468 46560646
LRRC37A3 68 7 151 74 0 0 0.264 0.027 0.585 0.287 0.000 0.000 chr17 64849130 64924478
LRRC37A 27 6 143 71 0 0 0.105 0.023 0.554 0.275 0.000 0.000 chr17 46290131 46342794
LRRC37B 120 27 110 60 0 0 0.465 0.105 0.426 0.233 0.000 0.000 chr17 32002383 32058487
LRRC38 223 78 28 21 0 0 0.864 0.302 0.109 0.081 0.000 0.000 chr1 13469973 13519003
LRRC39 143 36 105 60 0 0 0.554 0.140 0.407 0.233 0.000 0.000 chr1 100143448 100183256
LRRC3B 184 60 54 32 0 0 0.713 0.233 0.209 0.124 0.000 0.000 chr3 26617772 26715776
LRRC3C 201 70 49 30 0 0 0.779 0.271 0.190 0.116 0.000 0.000 chr17 39922732 39949999
LRRC3 212 71 43 32 0 0 0.822 0.275 0.167 0.124 0.000 0.000 chr21 44450510 44467196
LRRC40 159 58 74 33 0 0 0.616 0.225 0.287 0.128 0.000 0.000 chr1 70139805 70210579
LRRC41 184 59 64 39 0 0 0.713 0.229 0.248 0.151 0.000 0.000 chr1 46272462 46308616
LRRC42 157 49 94 51 0 0 0.609 0.190 0.364 0.198 0.000 0.000 chr1 53941350 53973168
LRRC43 194 58 58 42 0 0 0.752 0.225 0.225 0.163 0.000 0.000 chr12 122178123 122208471
LRRC45 203 69 48 29 0 0 0.787 0.267 0.186 0.112 0.000 0.000 chr17 82018305 82036151
LRRC46 195 55 60 47 0 0 0.756 0.213 0.233 0.182 0.000 0.000 chr17 47826670 47842719
LRRC47 205 65 44 33 0 0 0.795 0.252 0.171 0.128 0.000 0.000 chr1 3773559 3801498
LRRC49 130 43 90 48 0 0 0.504 0.167 0.349 0.186 0.000 0.000 chr15 70887826 71058658
LRRC4B 179 42 50 37 0 0 0.694 0.163 0.194 0.143 0.000 0.000 chr19 50511892 50573435
LRRC4C 24 1 112 59 0 0 0.093 0.004 0.434 0.229 0.000 0.000 chr11 40109209 41464652
LRRC4 188 56 66 46 1 0 0.729 0.217 0.256 0.178 0.004 0.000 chr7 128022071 128036437
LRRC51 167 49 69 39 0 0 0.647 0.190 0.267 0.151 0.000 0.000 chr11 72075850 72101895
LRRC52 174 49 76 51 0 0 0.674 0.190 0.295 0.198 0.000 0.000 chr1 165539000 165568957
LRRC53 170 53 75 47 0 0 0.659 0.205 0.291 0.182 0.000 0.000 chr1 74464376 74517611
LRRC55 215 79 39 23 1 1 0.833 0.306 0.151 0.089 0.004 0.004 chr11 57176953 57196717
LRRC56 193 54 47 34 0 0 0.748 0.209 0.182 0.132 0.000 0.000 chr11 532527 559912
LRRC57 177 55 73 44 0 0 0.686 0.213 0.283 0.171 0.000 0.000 chr15 42532829 42553793
LRRC58 187 55 63 42 0 0 0.725 0.213 0.244 0.163 0.000 0.000 chr3 120319509 120354354
LRRC59 179 53 76 51 0 0 0.694 0.205 0.295 0.198 0.000 0.000 chr17 50376238 50402523
LRRC61 192 73 59 27 0 0 0.744 0.283 0.229 0.105 0.000 0.000 chr7 150318355 150343156
LRRC63 192 72 43 20 0 0 0.744 0.279 0.167 0.078 0.000 0.000 chr13 46206928 46282115
LRRC66 167 53 82 46 0 0 0.647 0.205 0.318 0.178 0.000 0.000 chr4 51988652 52025363
LRRC69 158 56 77 38 0 0 0.612 0.217 0.298 0.147 0.000 0.000 chr8 91097619 91224257