Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view APOBEC1 215 75 36 25 0 0 0.833 0.291 0.140 0.097 0.000 0.000 chr12 7644400 7670908
view APOBEC2 179 62 74 40 0 0 0.694 0.240 0.287 0.155 0.000 0.000 chr6 41048202 41069891
view APOBEC3A 179 44 71 54 1 1 0.694 0.171 0.275 0.209 0.004 0.004 chr22 38952609 38968184
view APOBEC3B 176 55 71 41 1 0 0.682 0.213 0.275 0.159 0.004 0.000 chr22 38977347 38997779
view APOBEC3C 229 83 29 22 0 0 0.888 0.322 0.112 0.085 0.000 0.000 chr22 39009257 39025352
view APOBEC3D 228 81 27 22 0 0 0.884 0.314 0.105 0.085 0.000 0.000 chr22 39016127 39038277
view APOBEC3F 210 72 43 28 0 0 0.814 0.279 0.167 0.109 0.000 0.000 chr22 39035864 39060972
view APOBEC3G 211 77 45 27 1 0 0.818 0.298 0.174 0.105 0.004 0.000 chr22 39072275 39092743
view APOBEC3H 208 73 46 28 0 0 0.806 0.283 0.178 0.109 0.000 0.000 chr22 39092244 39109067
view APOBEC4 188 59 67 44 0 0 0.729 0.229 0.260 0.171 0.000 0.000 chr1 183641275 183658316
view APOBR 202 67 53 35 0 0 0.783 0.260 0.205 0.136 0.000 0.000 chr16 28489643 28503964
view APOB 174 51 62 37 0 0 0.674 0.198 0.240 0.143 0.000 0.000 chr2 20996429 21049073
view APOC1 217 70 37 32 1 0 0.841 0.271 0.143 0.124 0.004 0.000 chr19 44909608 44924346
view APOC2 198 63 57 40 0 0 0.767 0.244 0.221 0.155 0.000 0.000 chr19 44941051 44954565
view APOC3 224 83 30 19 0 0 0.868 0.322 0.116 0.074 0.000 0.000 chr11 116824907 116838072
view APOC4 198 60 56 41 0 0 0.767 0.233 0.217 0.159 0.000 0.000 chr19 44937237 44950496
view APOD 218 77 35 24 0 0 0.845 0.298 0.136 0.093 0.000 0.000 chr3 195563705 195588940
view APOE 211 65 43 36 0 0 0.818 0.252 0.167 0.140 0.000 0.000 chr19 44900796 44914393
view APOF 138 32 113 69 0 0 0.535 0.124 0.438 0.267 0.000 0.000 chr12 56355568 56367857
view APOH 192 56 60 45 0 0 0.744 0.217 0.233 0.174 0.000 0.000 chr17 66207033 66234415
view APOL1 206 73 44 26 0 0 0.798 0.283 0.171 0.101 0.000 0.000 chr22 36248133 36272525
view APOL2 191 55 58 42 1 1 0.740 0.213 0.225 0.163 0.004 0.004 chr22 36221209 36244527
view APOL3 182 55 63 40 1 1 0.705 0.213 0.244 0.155 0.004 0.004 chr22 36135329 36165755
view APOL4 216 76 40 28 0 0 0.837 0.295 0.155 0.109 0.000 0.000 chr22 36184128 36206809
view APOL5 200 68 53 33 0 0 0.775 0.264 0.205 0.128 0.000 0.000 chr22 35712872 35734483
view APOL6 192 64 59 35 0 0 0.744 0.248 0.229 0.136 0.000 0.000 chr22 35643446 35673404
view APOLD1 213 77 40 26 0 0 0.826 0.298 0.155 0.101 0.000 0.000 chr12 12780659 12796466
view APOM 209 69 47 34 0 0 0.810 0.267 0.182 0.132 0.000 0.000 chr6 31650894 31663210
view APOOL 66 17 174 77 0 0 0.256 0.066 0.674 0.298 0.000 0.000 chrX 84998877 85098315
view APOO 71 21 173 75 0 0 0.275 0.081 0.671 0.291 0.000 0.000 chrX 23828353 23912938
view APPBP2 72 11 155 78 0 0 0.279 0.043 0.601 0.302 0.000 0.000 chr17 60438158 60531242
view APPL1 132 25 99 62 0 0 0.512 0.097 0.384 0.240 0.000 0.000 chr3 57222729 57278471
view APPL2 195 66 57 35 0 0 0.756 0.256 0.221 0.136 0.000 0.000 chr12 105168300 105241174
view APP 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr21 25875550 26175770
view APRT 218 77 35 23 0 0 0.845 0.298 0.136 0.089 0.000 0.000 chr16 88804339 88816928
view APTX 193 70 61 32 0 0 0.748 0.271 0.236 0.124 0.000 0.000 chr9 32967616 33006628
view AQP10 196 65 58 37 0 0 0.760 0.252 0.225 0.143 0.000 0.000 chr1 154316093 154330325
view AQP11 215 75 38 27 0 0 0.833 0.291 0.147 0.105 0.000 0.000 chr11 77584953 77615356
view AQP12A 85 23 123 58 1 0 0.329 0.089 0.477 0.225 0.004 0.000 chr2 240686866 240703483
view AQP12B 89 25 114 50 1 0 0.345 0.097 0.442 0.194 0.004 0.000 chr2 240671418 240687885
view AQP1 215 72 38 28 0 0 0.833 0.279 0.147 0.109 0.000 0.000 chr7 30906853 30930516
view AQP2 220 79 32 23 3 1 0.853 0.306 0.124 0.089 0.012 0.004 chr12 49945737 49963878
view AQP3 230 84 26 19 0 0 0.891 0.326 0.101 0.074 0.000 0.000 chr9 33436160 33452593
view AQP4 218 71 34 28 0 0 0.845 0.275 0.132 0.109 0.000 0.000 chr18 26847043 26870707
view AQP5 232 86 24 17 1 1 0.899 0.333 0.093 0.066 0.004 0.004 chr12 49956872 49970682
view AQP6 228 88 30 17 0 0 0.884 0.341 0.116 0.066 0.000 0.000 chr12 49967947 49982139
view AQP7B 191 56 50 34 1 0 0.740 0.217 0.194 0.132 0.004 0.000 chr2 94582311 94609628
view AQP7 218 79 33 20 0 0 0.845 0.306 0.128 0.078 0.000 0.000 chr9 33378191 33407568
view AQP8 209 70 43 31 0 0 0.810 0.271 0.167 0.120 0.000 0.000 chr16 25211947 25233932
view AQP9 207 70 35 25 0 0 0.802 0.271 0.136 0.097 0.000 0.000 chr15 58133381 58190911