Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LRRC70 224 86 34 19 0 0 0.868 0.333 0.132 0.074 0.000 0.000 chr5 62573819 62586446
LRRC71 200 67 52 35 0 0 0.775 0.260 0.202 0.136 0.000 0.000 chr1 156915632 156938094
LRRC72 204 66 41 27 0 0 0.791 0.256 0.159 0.105 0.000 0.000 chr7 16521825 16586568
LRRC73 182 51 70 48 0 0 0.705 0.198 0.271 0.186 0.000 0.000 chr6 43501968 43515346
LRRC74A 203 70 40 26 0 0 0.787 0.271 0.155 0.101 0.000 0.000 chr14 76821408 76875304
LRRC74B 226 81 26 19 1 1 0.876 0.314 0.101 0.074 0.004 0.004 chr22 21040946 21069168
LRRC75A 170 37 64 50 0 0 0.659 0.143 0.248 0.194 0.000 0.000 chr17 16436577 16497193
LRRC75B 230 87 26 16 0 0 0.891 0.337 0.101 0.062 0.000 0.000 chr22 24580635 24598073
LRRC7 53 10 99 51 0 0 0.205 0.039 0.384 0.198 0.000 0.000 chr1 69562922 70149364
LRRC8A 171 51 62 36 0 0 0.663 0.198 0.240 0.140 0.000 0.000 chr9 128877133 128923039
LRRC8B 161 52 78 45 0 0 0.624 0.202 0.302 0.174 0.000 0.000 chr1 89519829 89602861
LRRC8C 133 39 91 42 0 0 0.516 0.151 0.353 0.163 0.000 0.000 chr1 89628120 89724533
LRRC8D 104 19 96 56 0 0 0.403 0.074 0.372 0.217 0.000 0.000 chr1 89816032 89941611
LRRC8E 194 61 57 37 0 0 0.752 0.236 0.221 0.143 0.000 0.000 chr19 7883510 7907016
LRRC9 160 63 79 35 0 0 0.620 0.244 0.306 0.136 0.000 0.000 chr14 59915144 60071817
LRRCC1 162 50 85 51 0 0 0.628 0.194 0.329 0.198 0.000 0.000 chr8 85102238 85151080
LRRD1 179 69 62 28 0 0 0.694 0.267 0.240 0.109 0.000 0.000 chr7 92139842 92184142
LRRFIP1 137 40 67 35 0 0 0.531 0.155 0.260 0.136 0.000 0.000 chr2 237622587 237786643
LRRFIP2 133 35 108 62 0 0 0.516 0.136 0.419 0.240 0.000 0.000 chr3 37047626 37179582
LRRIQ1 113 35 113 57 0 0 0.438 0.136 0.438 0.221 0.000 0.000 chr12 85031351 85250105
LRRIQ3 136 32 101 61 0 0 0.527 0.124 0.391 0.236 0.000 0.000 chr1 74021015 74203176
LRRIQ4 192 69 63 33 0 0 0.744 0.267 0.244 0.128 0.000 0.000 chr3 169807870 169842773
LRRK1 168 47 42 29 0 0 0.651 0.182 0.163 0.112 0.000 0.000 chr15 100914357 101083257
LRRK2 190 66 53 29 0 0 0.736 0.256 0.205 0.112 0.000 0.000 chr12 40219997 40374285
LRRN1 210 77 36 23 0 0 0.814 0.298 0.140 0.089 0.000 0.000 chr3 3794431 3854834
LRRN2 163 54 68 35 0 0 0.632 0.209 0.264 0.136 0.000 0.000 chr1 204612170 204690738
LRRN3 134 32 112 68 0 0 0.519 0.124 0.434 0.264 0.000 0.000 chr7 111086127 111130454
LRRN4CL 173 51 81 52 1 1 0.671 0.198 0.314 0.202 0.004 0.004 chr11 62681406 62694530
LRRN4 200 70 53 32 1 0 0.775 0.271 0.205 0.124 0.004 0.000 chr20 6035546 6059060
LRRTM1 208 77 46 27 3 1 0.806 0.298 0.178 0.105 0.012 0.004 chr2 80296878 80309752
LRRTM2 181 56 71 46 0 0 0.702 0.217 0.275 0.178 0.000 0.000 chr5 138863921 138880335
LRRTM3 146 39 73 44 0 0 0.566 0.151 0.283 0.171 0.000 0.000 chr10 66921036 67106551
LRRTM4 64 12 73 40 0 0 0.248 0.047 0.283 0.155 0.000 0.000 chr2 76742685 77527376
LRSAM1 169 54 71 36 0 0 0.655 0.209 0.275 0.140 0.000 0.000 chr9 127446510 127508499
LRTM1 173 47 80 54 1 1 0.671 0.182 0.310 0.209 0.004 0.004 chr3 54913231 54933059
LRTM2 230 78 22 21 1 1 0.891 0.302 0.085 0.081 0.004 0.004 chr12 1815565 1841753
LRWD1 213 70 40 30 0 0 0.826 0.271 0.155 0.116 0.000 0.000 chr7 102459984 102478168
LSAMP 52 5 98 57 0 0 0.202 0.019 0.380 0.221 0.000 0.000 chr3 115797374 116450487
LSG1 203 69 46 29 0 0 0.787 0.267 0.178 0.112 0.000 0.000 chr3 194635791 194677191
LSM10 215 73 41 30 1 1 0.833 0.283 0.159 0.116 0.004 0.004 chr1 36388436 36402908
LSM11 214 72 38 28 0 0 0.829 0.279 0.147 0.109 0.000 0.000 chr5 157738712 157765709
LSM12 148 41 94 55 0 0 0.574 0.159 0.364 0.213 0.000 0.000 chr17 44029328 44071671
LSM14A 157 31 78 53 0 0 0.609 0.120 0.302 0.205 0.000 0.000 chr19 34167504 34234288
LSM14B 169 46 82 53 0 0 0.655 0.178 0.318 0.205 0.000 0.000 chr20 62117475 62140374
LSM1 200 73 55 30 0 0 0.775 0.283 0.213 0.116 0.000 0.000 chr8 38158339 38181493
LSM2 213 69 40 31 0 0 0.826 0.267 0.155 0.120 0.000 0.000 chr6 31792396 31811966
LSM3 197 67 57 35 0 0 0.764 0.260 0.221 0.136 0.000 0.000 chr3 14173817 14206122
LSM4 196 65 56 35 0 0 0.760 0.252 0.217 0.136 0.000 0.000 chr19 18301236 18328076
LSM5 221 78 33 23 0 0 0.857 0.302 0.128 0.089 0.000 0.000 chr7 32480338 32495380
LSM6 187 65 63 33 0 0 0.725 0.252 0.244 0.128 0.000 0.000 chr4 146170718 146196535