Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LSM7 217 76 39 28 0 0 0.841 0.295 0.151 0.109 0.000 0.000 chr19 2316521 2333586
LSM8 206 81 47 21 1 1 0.798 0.314 0.182 0.081 0.004 0.004 chr7 118179164 118209035
LSMEM1 201 60 52 41 2 1 0.779 0.233 0.202 0.159 0.008 0.004 chr7 112475991 112496062
LSMEM2 186 65 66 34 0 0 0.721 0.252 0.256 0.132 0.000 0.000 chr3 50274087 50293114
LSP1 179 47 54 37 0 0 0.694 0.182 0.209 0.143 0.000 0.000 chr11 1848084 1897263
LSR 218 79 37 23 0 0 0.845 0.306 0.143 0.089 0.000 0.000 chr19 35244002 35272964
LSS 178 49 65 47 0 0 0.690 0.190 0.252 0.182 0.000 0.000 chr21 46183446 46233774
LST1 211 77 37 24 6 0 0.818 0.298 0.143 0.093 0.023 0.000 chr6 31581277 31593909
LTA4H 181 58 68 42 0 0 0.702 0.225 0.264 0.163 0.000 0.000 chr12 95995753 96040587
LTA 203 74 45 29 8 0 0.787 0.287 0.174 0.112 0.031 0.000 chr6 31567289 31579324
LTB4R2 203 70 53 35 2 0 0.787 0.271 0.205 0.136 0.008 0.000 chr14 24305140 24317038
LTB4R 213 74 44 31 1 0 0.826 0.287 0.171 0.120 0.004 0.000 chr14 24306502 24323036
LTBP1 81 10 88 53 0 0 0.314 0.039 0.341 0.205 0.000 0.000 chr2 32941953 33404509
LTBP2 140 34 79 46 0 0 0.543 0.132 0.306 0.178 0.000 0.000 chr14 74493183 74617237
LTBP3 157 52 85 42 1 0 0.609 0.202 0.329 0.163 0.004 0.000 chr11 65533559 65563359
LTBP4 168 42 74 51 0 0 0.651 0.163 0.287 0.198 0.000 0.000 chr19 40596369 40634818
LTBR 225 83 29 18 0 0 0.872 0.322 0.112 0.070 0.000 0.000 chr12 6379162 6396566
LTB 205 77 42 26 9 0 0.795 0.298 0.163 0.101 0.035 0.000 chr6 31575558 31587424
LTC4S 208 70 44 29 1 1 0.806 0.271 0.171 0.112 0.004 0.004 chr5 179788986 179801647
LTF 213 80 38 23 0 0 0.826 0.310 0.147 0.089 0.000 0.000 chr3 46430645 46469905
LTK 214 77 41 26 0 0 0.829 0.298 0.159 0.101 0.000 0.000 chr15 41498637 41518827
LTN1 201 72 51 31 0 0 0.779 0.279 0.198 0.120 0.000 0.000 chr21 28923144 28997877
LTO1 162 33 90 66 0 0 0.628 0.128 0.349 0.256 0.000 0.000 chr11 69660563 69680353
LTV1 206 77 48 27 0 0 0.798 0.298 0.186 0.105 0.000 0.000 chr6 143838338 143868812
LUC7L2 137 44 89 47 0 0 0.531 0.171 0.345 0.182 0.000 0.000 chr7 139354894 139428454
LUC7L3 195 72 50 24 0 0 0.756 0.279 0.194 0.093 0.000 0.000 chr17 50714603 50761219
LUC7L 174 51 67 42 0 0 0.674 0.198 0.260 0.163 0.000 0.000 chr16 183990 234449
LUM 191 68 63 34 1 0 0.740 0.264 0.244 0.132 0.004 0.000 chr12 91097629 91116494
LURAP1L 208 70 41 28 0 0 0.806 0.271 0.159 0.109 0.000 0.000 chr9 12770020 12828060
LURAP1 177 56 69 39 0 0 0.686 0.217 0.267 0.151 0.000 0.000 chr1 46198334 46226256
LUZP1 160 56 74 38 0 0 0.620 0.217 0.287 0.147 0.000 0.000 chr1 23079030 23173856
LUZP2 58 2 101 58 0 0 0.225 0.008 0.391 0.225 0.000 0.000 chr11 24492053 25087638
LUZP4 74 19 179 82 0 0 0.287 0.074 0.694 0.318 0.000 0.000 chrX 115284715 115312563
LVRN 208 75 33 20 0 0 0.806 0.291 0.128 0.078 0.000 0.000 chr5 115957475 116032606
LXN 212 76 42 26 1 1 0.822 0.295 0.163 0.101 0.004 0.004 chr3 158661414 158677648
LY6D 216 79 39 24 0 0 0.837 0.306 0.151 0.093 0.000 0.000 chr8 142779882 142791539
LY6E 188 54 64 45 0 0 0.729 0.209 0.248 0.174 0.000 0.000 chr8 143013529 143027409
LY6G5B 207 69 48 33 1 1 0.802 0.267 0.186 0.128 0.004 0.004 chr6 31664976 31678546
LY6G5C 211 74 43 27 1 1 0.818 0.287 0.167 0.105 0.004 0.004 chr6 31671684 31686067
LY6G6C 199 60 56 43 0 0 0.771 0.233 0.217 0.167 0.000 0.000 chr6 31713648 31726746
LY6G6D 200 61 53 39 0 0 0.775 0.236 0.205 0.151 0.000 0.000 chr6 31710348 31722919
LY6G6F 212 72 43 30 0 0 0.822 0.279 0.167 0.116 0.000 0.000 chr6 31701866 31715679
LY6H 221 73 34 29 0 0 0.857 0.283 0.132 0.112 0.000 0.000 chr8 143152916 143165321
LY6K 212 87 44 18 2 0 0.822 0.337 0.171 0.070 0.008 0.000 chr8 142695111 142710127
LY6L 214 78 41 26 3 1 0.829 0.302 0.159 0.101 0.012 0.004 chr8 143075630 143088486
LY75 164 61 65 28 0 0 0.636 0.236 0.252 0.109 0.000 0.000 chr2 159798355 159909756
LY86 211 72 34 22 0 0 0.818 0.279 0.132 0.085 0.000 0.000 chr6 6583720 6659982
LY96 156 43 89 53 0 0 0.605 0.167 0.345 0.205 0.000 0.000 chr8 73986392 74034079
LY9 196 70 55 32 1 1 0.760 0.271 0.213 0.124 0.004 0.004 chr1 160791174 160833255
LYAR 217 82 37 20 0 0 0.841 0.318 0.143 0.078 0.000 0.000 chr4 4262701 4295154