Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
LYG1 176 54 76 46 0 0 0.682 0.209 0.295 0.178 0.000 0.000 chr2 99279238 99306197
LYG2 212 77 39 23 1 1 0.822 0.298 0.151 0.089 0.004 0.004 chr2 99237246 99260666
LYL1 182 42 71 59 0 0 0.705 0.163 0.275 0.229 0.000 0.000 chr19 13094033 13107858
LYNX1 221 79 34 23 0 0 0.857 0.306 0.132 0.089 0.000 0.000 chr8 142766202 142782202
LYN 143 39 70 41 0 0 0.554 0.151 0.271 0.159 0.000 0.000 chr8 55874835 56019169
LYPD1 176 62 70 37 0 0 0.682 0.240 0.271 0.143 0.000 0.000 chr2 132638286 132675205
LYPD2 197 68 54 32 0 0 0.764 0.264 0.209 0.124 0.000 0.000 chr8 142745150 142757532
LYPD3 224 81 32 22 1 1 0.868 0.314 0.124 0.085 0.004 0.004 chr19 43455787 43470608
LYPD4 213 81 43 22 0 0 0.826 0.314 0.167 0.085 0.000 0.000 chr19 41832074 41849683
LYPD5 213 76 45 29 0 0 0.826 0.295 0.174 0.112 0.000 0.000 chr19 43790927 43807447
LYPD6B 131 38 77 47 0 0 0.508 0.147 0.298 0.182 0.000 0.000 chr2 149033699 149220262
LYPD6 114 19 101 62 0 0 0.442 0.074 0.391 0.240 0.000 0.000 chr2 149325587 149479138
LYPD8 186 64 64 37 1 0 0.721 0.248 0.248 0.143 0.004 0.000 chr1 248734415 248760759
LYPLA1 152 45 87 50 0 0 0.589 0.174 0.337 0.194 0.000 0.000 chr8 54041367 54106947
LYPLA2 191 60 59 37 1 1 0.740 0.233 0.229 0.143 0.004 0.004 chr1 23786145 23800539
LYPLAL1 178 59 74 41 0 0 0.690 0.229 0.287 0.159 0.000 0.000 chr1 219168878 219217858
LYRM1 190 63 60 35 0 0 0.736 0.244 0.233 0.136 0.000 0.000 chr16 20895771 20930006
LYRM2 196 67 61 37 0 0 0.760 0.260 0.236 0.143 0.000 0.000 chr6 89627224 89643747
LYRM4 142 40 73 47 0 0 0.550 0.155 0.283 0.182 0.000 0.000 chr6 5103419 5265950
LYRM7 149 31 93 62 0 0 0.578 0.120 0.360 0.240 0.000 0.000 chr5 131165944 131210428
LYRM9 196 69 58 34 1 1 0.760 0.267 0.225 0.132 0.004 0.004 chr17 27873358 27898365
LYSET 214 77 42 26 0 0 0.829 0.298 0.163 0.101 0.000 0.000 chr14 93180317 93193463
LYSMD1 171 43 82 57 0 0 0.663 0.167 0.318 0.221 0.000 0.000 chr1 151154748 151170902
LYSMD2 216 80 38 21 1 1 0.837 0.310 0.147 0.081 0.004 0.004 chr15 51718011 51742655
LYSMD3 205 75 51 28 0 0 0.795 0.291 0.198 0.109 0.000 0.000 chr5 90510626 90534584
LYSMD4 218 71 36 30 0 0 0.845 0.275 0.140 0.116 0.000 0.000 chr15 99722405 99738437
LYST 117 27 99 64 0 0 0.453 0.105 0.384 0.248 0.000 0.000 chr1 235656041 235871906
LYVE1 196 64 57 37 0 0 0.760 0.248 0.221 0.143 0.000 0.000 chr11 10551966 10573665
LYZL1 220 84 31 17 0 0 0.853 0.326 0.120 0.066 0.000 0.000 chr10 29284070 29316232
LYZL2 227 81 27 20 0 0 0.880 0.314 0.105 0.078 0.000 0.000 chr10 30606779 30634753
LYZL4 197 66 56 35 0 0 0.764 0.256 0.217 0.136 0.000 0.000 chr3 42392083 42415610
LYZL6 207 78 50 26 0 0 0.802 0.302 0.194 0.101 0.000 0.000 chr17 35929518 35948713
LYZ 224 85 32 19 0 0 0.868 0.329 0.124 0.074 0.000 0.000 chr12 69343381 69359234
LZIC 184 69 68 33 0 0 0.713 0.267 0.264 0.128 0.000 0.000 chr1 9921293 9948391
LZTFL1 194 75 60 27 0 0 0.752 0.291 0.233 0.105 0.000 0.000 chr3 45818316 45847119
LZTR1 222 76 28 23 1 1 0.860 0.295 0.109 0.089 0.004 0.004 chr22 20977297 21004032
LZTS1 202 63 37 27 0 0 0.783 0.244 0.143 0.105 0.000 0.000 chr8 20241165 20308963
LZTS2 202 61 45 34 0 0 0.783 0.236 0.174 0.132 0.000 0.000 chr10 100994808 101012833
LZTS3 222 77 33 25 0 0 0.860 0.298 0.128 0.097 0.000 0.000 chr20 3157617 3178549
M1AP 123 37 101 49 0 0 0.477 0.143 0.391 0.190 0.000 0.000 chr2 74552883 74653330
M6PR 201 71 52 30 1 1 0.779 0.275 0.202 0.116 0.004 0.004 chr12 8935361 8954645
MAB21L1 232 88 23 15 1 1 0.899 0.341 0.089 0.058 0.004 0.004 chr13 35468789 35481689
MAB21L2 207 78 51 27 0 0 0.802 0.302 0.198 0.105 0.000 0.000 chr4 150577151 150589693
MAB21L3 205 73 45 27 0 0 0.795 0.283 0.174 0.105 0.000 0.000 chr1 116106399 116143149
MAB21L4 222 84 33 18 0 0 0.860 0.326 0.128 0.070 0.000 0.000 chr2 240881048 240901156
MACC1 157 38 74 52 0 0 0.609 0.147 0.287 0.202 0.000 0.000 chr7 20129655 20222384
MACF1 122 33 92 53 0 0 0.473 0.128 0.357 0.205 0.000 0.000 chr1 39199695 39492138
MACIR 179 60 70 42 0 0 0.694 0.233 0.271 0.163 0.000 0.000 chr5 103253763 103283660
MACO1 140 39 97 56 0 0 0.543 0.151 0.376 0.217 0.000 0.000 chr1 25425897 25505209
MACROD1 98 14 92 54 0 0 0.380 0.054 0.357 0.209 0.000 0.000 chr11 63993558 64171113