Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
MACROD2 12 1 95 35 0 0 0.047 0.004 0.368 0.136 0.000 0.000 chr20 13990516 16058197
MACROH2A1 110 26 118 60 0 0 0.426 0.101 0.457 0.233 0.000 0.000 chr5 135329381 135404231
MACROH2A2 185 68 56 29 0 0 0.717 0.264 0.217 0.112 0.000 0.000 chr10 70047846 70117282
MAD1L1 131 27 61 35 0 0 0.508 0.105 0.236 0.136 0.000 0.000 chr7 1810795 2237945
MAD2L1BP 184 56 70 45 1 1 0.713 0.217 0.271 0.174 0.004 0.004 chr6 43630840 43645941
MAD2L1 190 64 67 40 0 0 0.736 0.248 0.260 0.155 0.000 0.000 chr4 120050623 120071848
MAD2L2 214 72 36 26 0 0 0.829 0.279 0.140 0.101 0.000 0.000 chr1 11669480 11686148
MADCAM1 181 49 60 42 0 0 0.702 0.190 0.233 0.163 0.000 0.000 chr19 491486 510343
MADD 171 53 74 45 0 0 0.663 0.205 0.287 0.174 0.000 0.000 chr11 47265133 47335031
MAEA 193 60 45 29 0 0 0.748 0.233 0.174 0.112 0.000 0.000 chr4 1284891 1345137
MAEL 203 76 51 27 0 0 0.787 0.295 0.198 0.105 0.000 0.000 chr1 166984280 167027214
MAF1 167 38 87 63 0 0 0.647 0.147 0.337 0.244 0.000 0.000 chr8 144099461 144112611
MAFA 222 77 31 23 0 0 0.860 0.298 0.120 0.089 0.000 0.000 chr8 143423064 143435732
MAFB 213 79 42 24 1 0 0.826 0.306 0.163 0.093 0.004 0.000 chr20 40680848 40694236
MAFF 193 57 56 41 0 0 0.748 0.221 0.217 0.159 0.000 0.000 chr22 38196994 38221507
MAFG 177 59 69 37 1 0 0.686 0.229 0.267 0.143 0.004 0.000 chr17 81913270 81932735
MAFK 189 58 61 40 0 0 0.733 0.225 0.236 0.155 0.000 0.000 chr7 1525702 1548043
MAF 233 87 22 16 1 0 0.903 0.337 0.085 0.062 0.004 0.000 chr16 79588838 79605737
MAGEA10 77 15 176 85 0 0 0.298 0.058 0.682 0.329 0.000 0.000 chrX 152128310 152143577
MAGEA11 93 31 159 71 1 0 0.360 0.120 0.616 0.275 0.004 0.000 chrX 149707060 149722268
MAGEA12 100 33 153 68 1 0 0.388 0.128 0.593 0.264 0.004 0.000 chrX 152728757 152742669
MAGEA1 106 31 151 73 0 0 0.411 0.120 0.585 0.283 0.000 0.000 chrX 153174284 153188880
MAGEA2B 93 24 145 73 9 3 0.360 0.093 0.562 0.283 0.035 0.012 chrX 152709628 152723607
MAGEA2 63 13 156 76 13 1 0.244 0.050 0.605 0.295 0.050 0.004 chrX 152744863 152758842
MAGEA3 99 38 116 57 34 3 0.384 0.147 0.450 0.221 0.132 0.012 chrX 152693794 152707347
MAGEA4 108 40 147 64 1 0 0.419 0.155 0.570 0.248 0.004 0.000 chrX 151907889 151930170
MAGEA6 51 7 150 63 3 0 0.198 0.027 0.581 0.244 0.012 0.000 chrX 152761136 152774689
MAGEA8 83 20 172 84 2 0 0.322 0.078 0.667 0.326 0.008 0.000 chrX 149876183 149890825
MAGEA9B 101 33 141 63 9 3 0.391 0.128 0.547 0.244 0.035 0.012 chrX 149576653 149592459
MAGEA9 95 27 141 62 6 1 0.368 0.105 0.547 0.240 0.023 0.004 chrX 149776930 149792737
MAGEB10 60 10 187 84 0 0 0.233 0.039 0.725 0.326 0.000 0.000 chrX 27802990 27828014
MAGEB16 81 21 172 80 0 0 0.314 0.081 0.667 0.310 0.000 0.000 chrX 35793342 35808772
MAGEB17 78 18 176 84 0 0 0.302 0.070 0.682 0.326 0.000 0.000 chrX 16162481 16176464
MAGEB18 102 34 152 68 1 0 0.395 0.132 0.589 0.264 0.004 0.000 chrX 26133343 26145736
MAGEB1 103 40 154 64 0 0 0.399 0.155 0.597 0.248 0.000 0.000 chrX 30242146 30257040
MAGEB2 99 33 152 66 0 0 0.384 0.128 0.589 0.256 0.000 0.000 chrX 30210563 30225089
MAGEB3 107 40 145 61 0 0 0.415 0.155 0.562 0.236 0.000 0.000 chrX 30225657 30242495
MAGEB4 107 38 148 64 0 0 0.415 0.147 0.574 0.248 0.000 0.000 chrX 30237000 30249187
MAGEB5 104 37 153 67 0 0 0.403 0.143 0.593 0.260 0.000 0.000 chrX 26211169 26223270
MAGEB6B 107 36 147 65 0 0 0.415 0.140 0.570 0.252 0.000 0.000 chrX 26155601 26167410
MAGEB6 98 32 157 71 1 0 0.380 0.124 0.609 0.275 0.004 0.000 chrX 26187440 26200646
MAGEC1 118 40 138 63 0 0 0.457 0.155 0.535 0.244 0.000 0.000 chrX 141898894 141914374
MAGEC2 101 24 154 78 0 0 0.391 0.093 0.597 0.302 0.000 0.000 chrX 142197342 142210290
MAGEC3 83 22 162 75 0 0 0.322 0.085 0.628 0.291 0.000 0.000 chrX 141833316 141902832
MAGED1 67 15 188 88 0 0 0.260 0.058 0.729 0.341 0.000 0.000 chrX 51888623 51907354
MAGED2 98 30 155 71 0 0 0.380 0.116 0.601 0.275 0.000 0.000 chrX 54802745 54821015
MAGED4B 75 12 170 87 5 0 0.291 0.047 0.659 0.337 0.019 0.000 chrX 52056827 52074183
MAGED4 68 9 174 89 4 0 0.264 0.035 0.674 0.345 0.016 0.000 chrX 52179888 52197268
MAGEE1 81 18 176 86 0 0 0.314 0.070 0.682 0.333 0.000 0.000 chrX 76422710 76436342
MAGEE2 74 13 183 91 0 0 0.287 0.050 0.709 0.353 0.000 0.000 chrX 75777987 75790254