Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
MAGEF1 227 83 28 19 0 0 0.880 0.322 0.109 0.074 0.000 0.000 chr3 184705364 184717064
MAGEH1 93 27 155 70 0 0 0.360 0.105 0.601 0.271 0.000 0.000 chrX 55447127 55458566
MAGEL2 217 76 38 26 1 1 0.841 0.295 0.147 0.101 0.004 0.004 chr15 23638549 23652867
MAGI1 52 0 104 60 0 0 0.202 0.000 0.403 0.233 0.000 0.000 chr3 65348526 66043918
MAGI2 20 0 104 48 0 0 0.078 0.000 0.403 0.186 0.000 0.000 chr7 78012055 79458667
MAGI3 117 54 91 39 0 0 0.453 0.209 0.353 0.151 0.000 0.000 chr1 113385515 113690923
MAGIX 65 6 188 94 0 0 0.252 0.023 0.729 0.364 0.000 0.000 chrX 49157758 49173774
MAGOHB 189 56 64 45 0 0 0.733 0.217 0.248 0.174 0.000 0.000 chr12 10599193 10618609
MAGOH 218 86 37 17 1 1 0.845 0.333 0.143 0.066 0.004 0.004 chr1 53221900 53243518
MAGT1 66 21 181 76 0 0 0.256 0.081 0.702 0.295 0.000 0.000 chrX 77820747 77900435
MAG 216 79 36 23 0 0 0.837 0.306 0.140 0.089 0.000 0.000 chr19 35287161 35318807
MAIP1 211 83 45 21 1 1 0.818 0.322 0.174 0.081 0.004 0.004 chr2 199950582 199969117
MAJIN 191 69 58 28 0 0 0.740 0.267 0.225 0.109 0.000 0.000 chr11 64933230 64977108
MAK16 199 70 52 31 0 0 0.771 0.271 0.202 0.120 0.000 0.000 chr8 33480182 33506262
MAK 135 24 86 55 0 0 0.523 0.093 0.333 0.213 0.000 0.000 chr6 10757723 10843539
MAL2 190 64 54 33 0 0 0.736 0.248 0.209 0.128 0.000 0.000 chr8 119203363 119250673
MALL 167 48 70 41 0 0 0.647 0.186 0.271 0.159 0.000 0.000 chr2 110078870 110120822
MALRD1 75 13 87 42 0 0 0.291 0.050 0.337 0.163 0.000 0.000 chr10 19043801 19739478
MALSU1 216 78 39 24 1 1 0.837 0.302 0.151 0.093 0.004 0.004 chr7 23294339 23316729
MALT1 202 72 44 24 0 0 0.783 0.279 0.171 0.093 0.000 0.000 chr18 58666465 58759477
MAL 161 52 81 45 0 0 0.624 0.202 0.314 0.174 0.000 0.000 chr2 95020708 95058992
MAMDC2 169 54 66 41 0 0 0.655 0.209 0.256 0.159 0.000 0.000 chr9 70038848 70231972
MAMDC4 174 45 72 48 0 0 0.674 0.174 0.279 0.186 0.000 0.000 chr9 136847346 136865799
MAML1 179 63 62 32 0 0 0.694 0.244 0.240 0.124 0.000 0.000 chr5 179727822 179782283
MAML2 114 19 66 36 0 0 0.442 0.074 0.256 0.140 0.000 0.000 chr11 95971598 96348195
MAML3 75 7 91 49 0 0 0.291 0.027 0.353 0.190 0.000 0.000 chr4 139711753 140159184
MAMLD1 49 4 170 78 0 0 0.190 0.016 0.659 0.302 0.000 0.000 chrX 150358317 150519173
MAMSTR 192 61 64 42 0 0 0.744 0.236 0.248 0.163 0.000 0.000 chr19 48707725 48724725
MAN1A1 174 52 58 41 0 0 0.674 0.202 0.225 0.159 0.000 0.000 chr6 119172205 119354761
MAN1A2 184 68 65 34 0 0 0.713 0.264 0.252 0.132 0.000 0.000 chr1 117362449 117533872
MAN1B1 202 63 45 33 1 0 0.783 0.244 0.174 0.128 0.004 0.000 chr9 137081985 137114183
MAN1C1 124 30 88 48 0 0 0.481 0.116 0.341 0.186 0.000 0.000 chr1 25611791 25789450
MAN2A1 147 39 84 53 0 0 0.570 0.151 0.326 0.205 0.000 0.000 chr5 109684927 109874625
MAN2A2 207 67 46 33 0 0 0.802 0.260 0.178 0.128 0.000 0.000 chr15 90898302 90927579
MAN2B1 189 61 64 41 0 0 0.733 0.236 0.248 0.159 0.000 0.000 chr19 12641512 12671742
MAN2B2 180 58 55 32 0 0 0.698 0.225 0.213 0.124 0.000 0.000 chr4 6570189 6628362
MAN2C1 190 66 65 38 0 0 0.736 0.256 0.252 0.147 0.000 0.000 chr15 75350792 75373607
MANBAL 135 36 108 61 0 0 0.523 0.140 0.419 0.236 0.000 0.000 chr20 37284655 37322260
MANBA 139 32 84 56 0 0 0.539 0.124 0.326 0.217 0.000 0.000 chr4 102625770 102765968
MANEAL 218 85 38 19 0 0 0.845 0.329 0.147 0.074 0.000 0.000 chr1 37788847 37806133
MANEA 204 78 49 23 0 0 0.791 0.302 0.190 0.089 0.000 0.000 chr6 95572535 95614452
MANF 191 71 63 30 1 1 0.740 0.275 0.244 0.116 0.004 0.004 chr3 51380291 51394397
MANSC1 160 61 86 35 0 0 0.620 0.236 0.333 0.136 0.000 0.000 chr12 12321056 12355242
MANSC4 202 72 54 32 1 0 0.783 0.279 0.209 0.124 0.004 0.000 chr12 27757427 27785236
MAOA 77 26 168 71 0 0 0.298 0.101 0.651 0.275 0.000 0.000 chrX 43651299 43751817
MAOB 52 14 183 83 0 0 0.202 0.054 0.709 0.322 0.000 0.000 chrX 43761610 43887450
MAP10 222 75 31 25 1 1 0.860 0.291 0.120 0.097 0.004 0.004 chr1 232800416 232814929
MAP1A 169 59 82 40 0 0 0.655 0.229 0.318 0.155 0.000 0.000 chr15 43512608 43536611
MAP1B 170 49 57 40 0 0 0.659 0.190 0.221 0.155 0.000 0.000 chr5 72102475 72214565
MAP1LC3A 203 75 54 29 0 0 0.787 0.291 0.209 0.112 0.000 0.000 chr20 34553718 34565345