Genic Haplotype Summary

Detail Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
MDGA1 200 64 37 27 0 0 0.775 0.248 0.143 0.105 0.000 0.000 chr6 37625679 37702883
MDGA2 60 3 98 56 0 0 0.233 0.012 0.380 0.217 0.000 0.000 chr14 46835092 47680605
MDH1B 184 62 64 36 0 0 0.713 0.240 0.248 0.140 0.000 0.000 chr2 206732763 206770328
MDH1 176 50 76 52 0 0 0.682 0.194 0.295 0.202 0.000 0.000 chr2 63583963 63612197
MDH2 198 71 53 29 0 0 0.767 0.275 0.205 0.112 0.000 0.000 chr7 76043106 76072508
MDK 154 38 100 63 0 0 0.597 0.147 0.388 0.244 0.000 0.000 chr11 46376669 46388801
MDM1 200 73 54 30 0 0 0.775 0.283 0.209 0.116 0.000 0.000 chr12 68289566 68337362
MDM2 193 67 51 28 0 0 0.748 0.260 0.198 0.109 0.000 0.000 chr12 68803177 68850544
MDM4 185 69 65 29 0 0 0.717 0.267 0.252 0.112 0.000 0.000 chr1 204511406 204563120
MDN1 144 35 76 49 0 0 0.558 0.136 0.295 0.190 0.000 0.000 chr6 89637498 89824794
MDP1 201 68 56 36 0 0 0.779 0.264 0.217 0.140 0.000 0.000 chr14 24208943 24221066
ME1 135 43 93 50 0 0 0.523 0.167 0.360 0.194 0.000 0.000 chr6 83205402 83436051
ME2 170 60 70 37 0 0 0.659 0.233 0.271 0.143 0.000 0.000 chr18 50874118 50959257
ME3 159 44 56 37 0 0 0.616 0.171 0.217 0.143 0.000 0.000 chr11 86436108 86677616
MEA1 165 49 90 53 0 0 0.640 0.190 0.349 0.205 0.000 0.000 chr6 43006143 43018946
MEAF6 213 77 40 25 0 0 0.826 0.298 0.155 0.097 0.000 0.000 chr1 37484993 37519766
MEAK7 233 87 22 16 0 0 0.903 0.337 0.085 0.062 0.000 0.000 chr16 84471355 84509659
MECOM 80 19 88 38 0 0 0.310 0.074 0.341 0.147 0.000 0.000 chr3 169078507 169668712
MECP2 52 10 186 80 0 0 0.202 0.039 0.721 0.310 0.000 0.000 chrX 154016573 154102717
MECR 191 60 54 35 0 0 0.740 0.233 0.209 0.136 0.000 0.000 chr1 29187657 29235934
MED10 209 75 47 28 0 0 0.810 0.291 0.182 0.109 0.000 0.000 chr5 6366874 6383547
MED11 215 75 36 23 0 0 0.833 0.291 0.140 0.089 0.000 0.000 chr17 4726428 4738607
MED12L 139 42 71 42 0 0 0.539 0.163 0.275 0.163 0.000 0.000 chr3 151080664 151441653
MED12 72 14 175 83 0 0 0.279 0.054 0.678 0.322 0.000 0.000 chrX 71113596 71147450
MED13L 126 43 86 45 0 0 0.488 0.167 0.333 0.174 0.000 0.000 chr12 115953576 116282693
MED13 162 61 78 36 0 0 0.628 0.236 0.302 0.140 0.000 0.000 chr17 61937605 62070278
MED14 62 20 186 80 0 0 0.240 0.078 0.721 0.310 0.000 0.000 chrX 40643305 40740542
MED15 170 50 66 41 0 0 0.659 0.194 0.256 0.159 0.000 0.000 chr22 20502610 20592619
MED16 27 6 76 16 0 0 0.105 0.023 0.295 0.062 0.000 0.000 chr19 862963 898187
MED17 159 52 85 44 1 1 0.616 0.202 0.329 0.171 0.004 0.004 chr11 93779282 93819963
MED18 181 48 73 53 0 0 0.702 0.186 0.283 0.205 0.000 0.000 chr1 28324040 28340965
MED19 189 54 58 43 1 0 0.733 0.209 0.225 0.167 0.004 0.000 chr11 57698710 57717215
MED1 139 36 98 57 0 0 0.539 0.140 0.380 0.221 0.000 0.000 chr17 39399285 39456263
MED20 221 81 33 21 1 1 0.857 0.314 0.128 0.081 0.004 0.004 chr6 41900354 41926139
MED21 212 77 42 25 0 0 0.822 0.298 0.163 0.097 0.000 0.000 chr12 27017558 27035673
MED22 211 71 43 34 0 0 0.818 0.275 0.167 0.132 0.000 0.000 chr9 133333312 133353131
MED23 159 56 86 42 0 0 0.616 0.217 0.333 0.163 0.000 0.000 chr6 131581732 131633242
MED24 198 68 52 31 0 0 0.767 0.264 0.202 0.120 0.000 0.000 chr17 40014104 40059408
MED25 202 69 47 28 0 0 0.783 0.267 0.182 0.109 0.000 0.000 chr19 49813289 49841979
MED26 133 23 103 71 0 0 0.516 0.089 0.399 0.275 0.000 0.000 chr19 16569919 16633204
MED27 136 38 78 47 0 0 0.527 0.147 0.302 0.182 0.000 0.000 chr9 131855112 132084867
MED28 163 33 87 65 0 0 0.632 0.128 0.337 0.252 0.000 0.000 chr4 17609641 17639105
MED29 193 60 64 44 0 0 0.748 0.233 0.248 0.171 0.000 0.000 chr19 39386378 39405641
MED30 173 58 80 44 1 0 0.671 0.225 0.310 0.171 0.004 0.000 chr8 117515713 117545262
MED31 213 76 41 25 1 1 0.826 0.295 0.159 0.097 0.004 0.004 chr17 6638311 6656605
MED4 203 76 50 28 1 0 0.787 0.295 0.194 0.109 0.004 0.000 chr13 48070724 48100104
MED6 202 76 52 25 0 0 0.783 0.295 0.202 0.097 0.000 0.000 chr14 70578221 70605655
MED7 192 61 64 42 1 1 0.744 0.236 0.248 0.163 0.004 0.004 chr5 157132424 157147865
MED8 190 63 64 38 0 0 0.736 0.244 0.248 0.147 0.000 0.000 chr1 43378917 43394800
MED9 201 71 48 29 0 0 0.779 0.275 0.186 0.112 0.000 0.000 chr17 17472000 17498221