Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view B2M 192 58 61 43 1 0 0.744 0.225 0.236 0.167 0.004 0.000 chr15 44706517 44723145
view B3GALNT1 199 70 56 34 0 0 0.771 0.271 0.217 0.132 0.000 0.000 chr3 161078883 161110349
view B3GALNT2 171 57 77 41 0 0 0.663 0.221 0.298 0.159 0.000 0.000 chr1 235442190 235509452
view B3GALT1 58 8 86 44 0 0 0.225 0.031 0.333 0.171 0.000 0.000 chr2 167288001 167879045
view B3GALT2 198 69 58 35 0 0 0.767 0.267 0.225 0.136 0.000 0.000 chr1 193173730 193191613
view B3GALT4 181 61 75 43 0 0 0.702 0.236 0.291 0.167 0.000 0.000 chr6 33272123 33283825
view B3GALT5 167 43 64 39 0 0 0.647 0.167 0.248 0.151 0.000 0.000 chr21 39607940 39678137
view B3GALT6 182 54 66 41 0 0 0.705 0.209 0.256 0.159 0.000 0.000 chr1 1227237 1240041
view B3GALT9 201 82 55 21 0 0 0.779 0.318 0.213 0.081 0.000 0.000 chr9 120788467 120806787
view B3GAT1 175 41 63 51 0 0 0.678 0.159 0.244 0.198 0.000 0.000 chr11 134373508 134417242
view B3GAT2 157 46 64 36 0 0 0.609 0.178 0.248 0.140 0.000 0.000 chr6 70851679 70962060
view B3GAT3 144 25 101 69 1 0 0.558 0.097 0.391 0.267 0.004 0.000 chr11 62610296 62626986
view B3GLCT 133 36 81 48 0 0 0.516 0.140 0.314 0.186 0.000 0.000 chr13 31194975 31337276
view B3GNT2 202 66 48 33 1 1 0.783 0.256 0.186 0.128 0.004 0.004 chr2 62191115 62229731
view B3GNT3 202 59 46 36 0 0 0.783 0.229 0.178 0.140 0.000 0.000 chr19 17790138 17818576
view B3GNT4 205 70 50 33 2 1 0.795 0.271 0.194 0.128 0.008 0.004 chr12 122198709 122213952
view B3GNT5 194 62 61 40 0 0 0.752 0.240 0.236 0.155 0.000 0.000 chr3 183248253 183278385
view B3GNT6 220 75 34 26 0 0 0.853 0.291 0.132 0.101 0.000 0.000 chr11 77029398 77046973
view B3GNT7 212 76 45 29 0 0 0.822 0.295 0.174 0.112 0.000 0.000 chr2 231390710 231406164
view B3GNT8 209 69 44 32 2 1 0.810 0.267 0.171 0.124 0.008 0.004 chr19 41420359 41432374
view B3GNT9 170 52 84 51 1 0 0.659 0.202 0.326 0.198 0.004 0.000 chr16 67143104 67155998
view B3GNTL1 133 37 78 39 0 0 0.516 0.143 0.302 0.151 0.000 0.000 chr17 82937149 83056770
view B4GALNT1 202 66 56 39 0 0 0.783 0.256 0.217 0.151 0.000 0.000 chr12 57618409 57638201
view B4GALNT2 189 59 50 32 0 0 0.733 0.229 0.194 0.124 0.000 0.000 chr17 49127769 49181840
view B4GALNT3 196 61 39 28 0 0 0.760 0.236 0.151 0.109 0.000 0.000 chr12 454939 568509
view B4GALNT4 91 15 113 50 0 0 0.353 0.058 0.438 0.194 0.000 0.000 chr11 364499 387117
view B4GALT1 182 59 50 33 0 0 0.705 0.229 0.194 0.128 0.000 0.000 chr9 33105642 33172336
view B4GALT2 202 71 52 31 0 0 0.783 0.275 0.202 0.120 0.000 0.000 chr1 43974210 43996168
view B4GALT3 186 66 70 38 1 0 0.721 0.256 0.271 0.147 0.004 0.000 chr1 161166310 161182507
view B4GALT4 217 82 37 20 1 1 0.841 0.318 0.143 0.078 0.004 0.004 chr3 119206742 119245878
view B4GALT5 181 72 63 29 0 0 0.702 0.279 0.244 0.112 0.000 0.000 chr20 49627945 49718878
view B4GALT6 152 48 77 41 0 0 0.589 0.186 0.298 0.159 0.000 0.000 chr18 31617246 31689581
view B4GALT7 228 81 28 23 1 0 0.884 0.314 0.109 0.089 0.004 0.000 chr5 177595132 177615330
view B4GAT1 205 73 46 26 0 0 0.795 0.283 0.178 0.101 0.000 0.000 chr11 66340374 66352629
view B9D1 176 54 74 47 0 0 0.682 0.209 0.287 0.182 0.000 0.000 chr17 19338175 19367723
view B9D2 179 52 74 48 0 0 0.694 0.202 0.287 0.186 0.000 0.000 chr19 41349417 41369149
view BAALC 165 48 69 41 0 0 0.640 0.186 0.267 0.159 0.000 0.000 chr8 103135725 103235305
view BAAT 208 80 47 23 0 0 0.806 0.310 0.182 0.089 0.000 0.000 chr9 101355417 101390006
view BABAM1 211 71 41 29 1 0 0.818 0.275 0.159 0.112 0.004 0.000 chr19 17262443 17284337
view BABAM2 78 10 111 56 0 0 0.302 0.039 0.430 0.217 0.000 0.000 chr2 27885729 28343901
view BACE1 199 64 49 33 0 0 0.771 0.248 0.190 0.128 0.000 0.000 chr11 117280698 117321256
view BACE2 135 22 85 64 0 0 0.523 0.085 0.329 0.248 0.000 0.000 chr21 41163160 41287530
view BACH1 183 61 65 38 0 0 0.709 0.236 0.252 0.147 0.000 0.000 chr21 29293922 29351148
view BACH2 96 12 76 49 0 0 0.372 0.047 0.295 0.190 0.000 0.000 chr6 89921528 90301843
view BAD 193 60 56 37 0 0 0.748 0.233 0.217 0.143 0.000 0.000 chr11 64264830 64289665
view BAG1 173 59 81 44 0 0 0.671 0.229 0.314 0.171 0.000 0.000 chr9 33247471 33269708
view BAG2 121 26 130 76 0 0 0.469 0.101 0.504 0.295 0.000 0.000 chr6 57167326 57194833
view BAG3 209 70 40 29 0 0 0.810 0.271 0.155 0.112 0.000 0.000 chr10 119646380 119682819
view BAG4 152 52 88 47 0 0 0.589 0.202 0.341 0.182 0.000 0.000 chr8 38171855 38218301
view BAG5 204 69 53 35 0 0 0.791 0.267 0.205 0.136 0.000 0.000 chr14 103551551 103567657