Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view C1orf115 196 66 59 36 0 0 0.760 0.256 0.229 0.140 0.000 0.000 chr1 220685363 220704153
view C1orf116 194 62 63 42 0 0 0.752 0.240 0.244 0.163 0.000 0.000 chr1 207013522 207037756
view C1orf122 209 77 47 27 0 0 0.810 0.298 0.182 0.105 0.000 0.000 chr1 37802790 37814454
view C1orf127 195 61 45 28 0 0 0.756 0.236 0.174 0.109 0.000 0.000 chr1 10941475 10987076
view C1orf131 220 79 33 22 0 0 0.853 0.306 0.128 0.085 0.000 0.000 chr1 231218765 231246175
view C1orf141 149 36 88 54 0 0 0.578 0.140 0.341 0.209 0.000 0.000 chr1 67087165 67139970
view C1orf146 139 31 102 64 0 0 0.539 0.120 0.395 0.248 0.000 0.000 chr1 92212915 92250813
view C1orf159 162 38 62 43 0 0 0.628 0.147 0.240 0.167 0.000 0.000 chr1 1076823 1121089
view C1orf162 237 94 20 10 1 1 0.919 0.364 0.078 0.039 0.004 0.004 chr1 111468984 111483512
view C1orf167 174 48 67 42 0 0 0.674 0.186 0.260 0.163 0.000 0.000 chr1 11757193 11794585
view C1orf174 219 79 35 23 1 1 0.849 0.306 0.136 0.089 0.004 0.004 chr1 3884133 3905272
view C1orf185 123 42 110 56 0 0 0.477 0.163 0.426 0.217 0.000 0.000 chr1 51097228 51153086
view C1orf198 213 77 41 27 0 0 0.826 0.298 0.159 0.105 0.000 0.000 chr1 230832119 230873521
view C1orf202 208 77 48 26 1 1 0.806 0.298 0.186 0.101 0.004 0.004 chr1 244724701 244736015
view C1orf210 220 78 33 22 0 0 0.853 0.302 0.128 0.085 0.000 0.000 chr1 43276877 43290581
view C1orf216 187 55 66 45 0 0 0.725 0.213 0.256 0.174 0.000 0.000 chr1 35708877 35723884
view C1orf21 115 28 87 48 0 0 0.446 0.109 0.337 0.186 0.000 0.000 chr1 184382029 184634019
view C1orf226 236 92 21 12 0 0 0.915 0.357 0.081 0.047 0.000 0.000 chr1 162376728 162391812
view C1orf232 199 64 57 39 1 1 0.771 0.248 0.221 0.151 0.004 0.004 chr1 26159101 26173963
view C1orf35 209 78 46 26 2 0 0.810 0.302 0.178 0.101 0.008 0.000 chr1 228095731 228108325
view C1orf43 186 60 63 39 0 0 0.721 0.233 0.244 0.151 0.000 0.000 chr1 154201720 154225590
view C1orf50 208 72 45 29 0 0 0.806 0.279 0.174 0.112 0.000 0.000 chr1 42762249 42784491
view C1orf52 218 84 36 19 2 1 0.845 0.326 0.140 0.074 0.008 0.004 chr1 85244953 85264662
view C1orf53 221 80 36 24 1 1 0.857 0.310 0.140 0.093 0.004 0.004 chr1 197897630 197912362
view C1orf54 216 76 40 27 0 0 0.837 0.295 0.155 0.105 0.000 0.000 chr1 150267790 150285916
view C1orf56 170 51 84 50 0 0 0.659 0.198 0.326 0.194 0.000 0.000 chr1 151042751 151056420
view C1orf74 222 82 35 22 1 1 0.860 0.318 0.136 0.085 0.004 0.004 chr1 209774208 209789559
view C1orf87 190 70 47 24 0 0 0.736 0.271 0.182 0.093 0.000 0.000 chr1 59985394 60078770
view C1orf94 177 52 64 45 0 0 0.686 0.202 0.248 0.174 0.000 0.000 chr1 34171907 34224131
view C20orf141 206 71 47 31 0 0 0.798 0.275 0.182 0.120 0.000 0.000 chr20 2809987 2820830
view C20orf144 192 60 65 44 0 0 0.744 0.233 0.252 0.171 0.000 0.000 chr20 33657327 33668908
view C20orf173 182 52 70 48 1 0 0.705 0.202 0.271 0.186 0.004 0.000 chr20 35521979 35534652
view C20orf202 207 69 49 34 1 1 0.802 0.267 0.190 0.132 0.004 0.004 chr20 1198454 1214076
view C20orf203 179 50 61 39 0 0 0.694 0.194 0.236 0.151 0.000 0.000 chr20 32626625 32678941
view C20orf204 195 60 60 42 0 0 0.756 0.233 0.233 0.163 0.000 0.000 chr20 64031182 64044001
view C20orf85 164 40 88 60 1 1 0.636 0.155 0.341 0.233 0.004 0.004 chr20 58145902 58166150
view C20orf96 204 66 43 28 0 0 0.791 0.256 0.167 0.109 0.000 0.000 chr20 265863 295750
view C21orf140 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr21 34395112 34406072
view C21orf58 188 54 55 38 0 0 0.729 0.209 0.213 0.147 0.000 0.000 chr21 46296130 46328870
view C21orf62 151 36 88 54 0 0 0.585 0.140 0.341 0.209 0.000 0.000 chr21 32785673 32818703
view C21orf91 206 72 43 27 0 0 0.798 0.279 0.167 0.105 0.000 0.000 chr21 17783974 17824356
view C22orf15 215 75 41 28 0 0 0.833 0.291 0.159 0.109 0.000 0.000 chr22 23757990 23770863
view C22orf23 186 58 66 43 0 0 0.721 0.225 0.256 0.167 0.000 0.000 chr22 37938050 37958601
view C22orf31 235 91 21 13 0 0 0.911 0.353 0.081 0.050 0.000 0.000 chr22 29053672 29066831
view C22orf39 209 81 47 23 2 1 0.810 0.314 0.182 0.089 0.008 0.004 chr22 19435886 19452711
view C22orf42 198 69 50 26 1 1 0.767 0.267 0.194 0.101 0.004 0.004 chr22 32144006 32164303
view C2CD2L 198 72 59 33 0 0 0.767 0.279 0.229 0.128 0.000 0.000 chr11 119102344 119123544
view C2CD2 197 59 39 30 0 0 0.764 0.229 0.151 0.116 0.000 0.000 chr21 41880112 41959018
view C2CD3 158 45 62 41 0 0 0.612 0.174 0.240 0.159 0.000 0.000 chr11 74007718 74176002
view C2CD4A 204 74 52 29 1 1 0.791 0.287 0.202 0.112 0.004 0.004 chr15 62061977 62075917