Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view ZSCAN18 230 82 26 22 0 0 0.891 0.318 0.101 0.085 0.000 0.000 chr19 58078856 58103231
view ZSCAN1 189 59 57 35 0 0 0.733 0.229 0.221 0.136 0.000 0.000 chr19 58029025 58059631
view ZSCAN20 210 77 43 24 0 0 0.814 0.298 0.167 0.093 0.000 0.000 chr1 33467645 33506643
view ZSCAN21 195 67 57 34 0 0 0.756 0.260 0.221 0.132 0.000 0.000 chr7 100044774 100070040
view ZSCAN22 199 57 54 44 0 0 0.771 0.221 0.209 0.171 0.000 0.000 chr19 58321994 58347332
view ZSCAN23 216 84 41 20 0 0 0.837 0.326 0.159 0.078 0.000 0.000 chr6 28427655 28448491
view ZSCAN25 180 65 72 35 1 1 0.698 0.252 0.279 0.136 0.004 0.004 chr7 99611946 99637408
view ZSCAN26 211 80 44 23 1 1 0.818 0.310 0.171 0.089 0.004 0.004 chr6 28262143 28283204
view ZSCAN29 196 77 59 25 1 1 0.760 0.298 0.229 0.097 0.004 0.004 chr15 43353175 43376043
view ZSCAN2 203 67 52 35 0 0 0.787 0.260 0.202 0.136 0.000 0.000 chr15 84596009 84628716
view ZSCAN30 191 70 56 29 0 0 0.740 0.271 0.217 0.112 0.000 0.000 chr18 35246062 35295229
view ZSCAN31 207 77 48 25 1 1 0.802 0.298 0.186 0.097 0.004 0.004 chr6 28319737 28341148
view ZSCAN32 199 56 55 45 0 0 0.771 0.217 0.213 0.174 0.000 0.000 chr16 3377085 3406004
view ZSCAN4 212 77 41 24 0 0 0.822 0.298 0.159 0.093 0.000 0.000 chr19 57663935 57684152
view ZSCAN5A 180 51 49 34 0 0 0.698 0.198 0.190 0.132 0.000 0.000 chr19 56216303 56319839
view ZSCAN5B 234 90 17 8 0 0 0.907 0.349 0.066 0.031 0.000 0.000 chr19 56184686 56202783
view ZSCAN5C 235 89 20 13 0 0 0.911 0.345 0.078 0.050 0.000 0.000 chr19 56197273 56214461
view ZSCAN9 207 77 49 26 1 1 0.802 0.298 0.190 0.101 0.004 0.004 chr6 28220275 28238487
view ZSWIM1 201 73 52 29 2 1 0.779 0.283 0.202 0.112 0.008 0.004 chr20 45876227 45890266
view ZSWIM2 163 46 89 56 1 1 0.632 0.178 0.345 0.217 0.004 0.004 chr2 186822475 186854170
view ZSWIM3 192 73 57 29 0 0 0.744 0.283 0.221 0.112 0.000 0.000 chr20 45852614 45884122
view ZSWIM4 177 53 66 43 0 0 0.686 0.205 0.256 0.167 0.000 0.000 chr19 13790443 13837254
view ZSWIM5 116 23 96 58 0 0 0.450 0.089 0.372 0.225 0.000 0.000 chr1 45011399 45211605
view ZSWIM6 137 31 91 61 0 0 0.531 0.120 0.353 0.236 0.000 0.000 chr5 61327258 61551172
view ZSWIM7 171 52 83 49 0 0 0.663 0.202 0.322 0.190 0.000 0.000 chr17 15971560 16004704
view ZSWIM8 156 45 96 55 0 0 0.605 0.174 0.372 0.213 0.000 0.000 chr10 73780606 73806793
view ZSWIM9 193 60 53 36 0 0 0.748 0.233 0.205 0.140 0.000 0.000 chr19 48165680 48202620
view ZUP1 188 67 65 33 0 0 0.729 0.260 0.252 0.128 0.000 0.000 chr6 116630618 116673766
view ZW10 206 83 44 17 1 1 0.798 0.322 0.171 0.066 0.004 0.004 chr11 113728187 113778692
view ZWILCH 204 74 44 23 0 0 0.791 0.287 0.171 0.089 0.000 0.000 chr15 66500326 66555130
view ZWINT 219 82 36 22 1 0 0.849 0.318 0.140 0.085 0.004 0.000 chr10 56352227 56366259
view ZXDA 97 31 156 72 2 1 0.376 0.120 0.605 0.279 0.008 0.004 chrX 57900430 57915458
view ZXDB 83 24 172 79 1 1 0.322 0.093 0.667 0.306 0.004 0.004 chrX 57587011 57602477
view ZXDC 194 67 55 33 0 0 0.752 0.260 0.213 0.128 0.000 0.000 chr3 126432601 126480891
view ZYG11A 144 42 88 43 0 0 0.558 0.163 0.341 0.167 0.000 0.000 chr1 52837760 52899998
view ZYG11B 175 66 67 29 0 0 0.678 0.256 0.260 0.112 0.000 0.000 chr1 52721453 52832336
view ZYX 226 82 29 20 0 0 0.876 0.318 0.112 0.078 0.000 0.000 chr7 143376345 143396111
view ZZEF1 147 46 78 44 0 0 0.570 0.178 0.302 0.171 0.000 0.000 chr17 3999445 4148030
view ZZZ3 173 61 73 38 0 0 0.671 0.236 0.283 0.147 0.000 0.000 chr1 77557416 77687658