Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view C2CD4B 215 78 40 25 0 0 0.833 0.302 0.155 0.097 0.000 0.000 chr15 62158535 62170285
view C2CD4C 160 44 80 44 0 0 0.620 0.171 0.310 0.171 0.000 0.000 chr19 400445 414147
view C2CD4D 220 74 34 27 1 1 0.853 0.287 0.132 0.105 0.004 0.004 chr1 151832818 151844820
view C2CD5 99 13 136 79 0 0 0.384 0.050 0.527 0.306 0.000 0.000 chr12 22443583 22549542
view C2CD6 134 36 76 46 0 0 0.519 0.140 0.295 0.178 0.000 0.000 chr2 201482421 201624178
view C2 197 64 58 38 0 0 0.764 0.248 0.225 0.147 0.000 0.000 chr6 31922717 31950672
view C2orf15 206 66 49 37 0 0 0.798 0.256 0.190 0.143 0.000 0.000 chr2 99136707 99156669
view C2orf16 162 55 85 43 0 0 0.628 0.213 0.329 0.167 0.000 0.000 chr2 27532386 27587722
view C2orf42 172 52 71 43 0 0 0.667 0.202 0.275 0.167 0.000 0.000 chr2 70144885 70196019
view C2orf49 206 76 50 27 0 0 0.798 0.295 0.194 0.105 0.000 0.000 chr2 105332540 105354211
view C2orf50 189 58 60 41 0 0 0.733 0.225 0.233 0.159 0.000 0.000 chr2 11128128 11156317
view C2orf66 152 42 103 61 1 0 0.589 0.163 0.399 0.236 0.004 0.000 chr2 196799417 196814355
view C2orf68 187 66 71 39 0 0 0.725 0.256 0.275 0.151 0.000 0.000 chr2 85600254 85617066
view C2orf69 205 86 45 17 0 0 0.795 0.333 0.174 0.066 0.000 0.000 chr2 199906293 199933273
view C2orf72 229 89 25 13 2 1 0.888 0.345 0.097 0.050 0.008 0.004 chr2 231032523 231054719
view C2orf73 206 74 45 28 0 0 0.798 0.287 0.174 0.109 0.000 0.000 chr2 54325884 54366581
view C2orf74 210 70 45 32 0 0 0.814 0.271 0.174 0.124 0.000 0.000 chr2 61157188 61169828
view C2orf76 176 55 66 42 0 0 0.682 0.213 0.256 0.163 0.000 0.000 chr2 119297225 119371834
view C2orf78 105 18 118 65 0 0 0.407 0.070 0.457 0.252 0.000 0.000 chr2 73779183 73822148
view C2orf80 170 38 73 54 0 0 0.659 0.147 0.283 0.209 0.000 0.000 chr2 208160347 208195030
view C2orf81 200 75 52 25 0 0 0.775 0.291 0.202 0.097 0.000 0.000 chr2 74409177 74426619
view C2orf88 209 77 44 24 1 1 0.810 0.298 0.171 0.093 0.004 0.004 chr2 190175863 190208484
view C2orf92 154 46 89 49 0 0 0.597 0.178 0.345 0.190 0.000 0.000 chr2 97664713 97708066
view C3AR1 211 72 43 30 0 0 0.818 0.279 0.167 0.116 0.000 0.000 chr12 8051844 8071359
view C3 184 50 54 37 0 0 0.713 0.194 0.209 0.143 0.000 0.000 chr19 6672704 6725650
view C3orf14 193 64 55 34 0 0 0.748 0.248 0.213 0.132 0.000 0.000 chr3 62314022 62341213
view C3orf18 190 63 62 38 1 0 0.736 0.244 0.240 0.147 0.004 0.000 chr3 50553025 50572747
view C3orf20 189 67 48 27 0 0 0.733 0.260 0.186 0.105 0.000 0.000 chr3 14670141 14778036
view C3orf22 203 65 53 39 0 0 0.787 0.252 0.205 0.151 0.000 0.000 chr3 126544692 126563932
view C3orf33 202 67 46 31 0 0 0.783 0.260 0.178 0.120 0.000 0.000 chr3 155757617 155811278
view C3orf38 159 52 89 45 0 0 0.616 0.202 0.345 0.174 0.000 0.000 chr3 88144959 88162965
view C3orf49 193 68 56 30 0 0 0.748 0.264 0.217 0.116 0.000 0.000 chr3 63814299 63853636
view C3orf52 185 55 62 44 0 0 0.717 0.213 0.240 0.171 0.000 0.000 chr3 112081389 112123210
view C3orf62 162 37 87 63 1 0 0.628 0.143 0.337 0.244 0.004 0.000 chr3 49263596 49282232
view C3orf70 193 72 50 24 0 0 0.748 0.279 0.194 0.093 0.000 0.000 chr3 185071838 185158060
view C3orf80 204 65 51 37 0 0 0.791 0.252 0.198 0.143 0.000 0.000 chr3 160220422 160233213
view C3orf84 152 40 94 55 1 1 0.589 0.155 0.364 0.213 0.004 0.004 chr3 49172634 49196858
view C3orf85 184 47 68 52 0 0 0.713 0.182 0.264 0.202 0.000 0.000 chr3 109131719 109156401
view C4A 161 56 84 41 0 0 0.624 0.217 0.326 0.159 0.000 0.000 chr6 31977057 32007681
view C4BPA 170 41 74 54 0 0 0.659 0.159 0.287 0.209 0.000 0.000 chr1 207099233 207149972
view C4BPB 193 53 58 45 0 0 0.748 0.205 0.225 0.174 0.000 0.000 chr1 207083860 207104993
view C4B 167 53 87 50 0 0 0.647 0.205 0.337 0.194 0.000 0.000 chr6 32009795 32040418
view C4orf17 192 71 61 31 0 0 0.744 0.275 0.236 0.120 0.000 0.000 chr4 99506021 99547303
view C4orf19 176 46 42 30 0 0 0.682 0.178 0.163 0.116 0.000 0.000 chr4 37448925 37598510
view C4orf33 197 72 56 28 0 0 0.764 0.279 0.217 0.109 0.000 0.000 chr4 129091152 129121637
view C4orf36 192 65 59 35 0 0 0.744 0.252 0.229 0.136 0.000 0.000 chr4 86871205 86897422
view C4orf3 211 81 46 23 0 0 0.818 0.314 0.178 0.089 0.000 0.000 chr4 119291419 119305645
view C4orf45 131 21 87 63 0 0 0.508 0.081 0.337 0.244 0.000 0.000 chr4 158888134 159040229
view C4orf46 184 59 73 45 0 0 0.713 0.229 0.283 0.174 0.000 0.000 chr4 158661675 158676887
view C4orf47 178 50 70 47 0 0 0.690 0.194 0.271 0.182 0.000 0.000 chr4 185421254 185454826