Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view C4orf48 195 64 58 37 1 0 0.756 0.248 0.225 0.143 0.004 0.000 chr4 2036995 2048964
view C4orf50 172 41 57 37 0 0 0.667 0.159 0.221 0.143 0.000 0.000 chr4 5954375 6023431
view C4orf51 0 0 0 0 0 0 0.000 0.000 0.000 0.000 0.000 0.000 chr4 145675146 145737797
view C4orf54 195 73 60 31 0 0 0.756 0.283 0.233 0.120 0.000 0.000 chr4 99631529 99662828
view C5AR1 187 52 62 44 0 0 0.725 0.202 0.240 0.171 0.000 0.000 chr19 47304861 47327066
view C5AR2 202 65 47 34 0 0 0.783 0.252 0.182 0.132 0.000 0.000 chr19 47327175 47352329
view C5 137 44 99 50 0 0 0.531 0.171 0.384 0.194 0.000 0.000 chr9 120947335 121055275
view C5orf15 218 78 33 20 0 0 0.845 0.302 0.128 0.078 0.000 0.000 chr5 133950510 133973625
view C5orf22 201 72 51 27 0 0 0.779 0.279 0.198 0.105 0.000 0.000 chr5 31527301 31560053
view C5orf24 200 70 53 31 0 0 0.775 0.271 0.205 0.120 0.000 0.000 chr5 134840968 134864735
view C5orf34 169 52 75 44 0 0 0.655 0.202 0.291 0.171 0.000 0.000 chr5 43481709 43520148
view C5orf46 225 83 29 20 1 0 0.872 0.322 0.112 0.078 0.004 0.000 chr5 147887722 147911538
view C5orf47 190 56 62 48 1 0 0.736 0.217 0.240 0.186 0.004 0.000 chr5 173984170 174011140
view C5orf52 208 70 47 34 2 0 0.806 0.271 0.182 0.132 0.008 0.000 chr5 157666533 157685158
view C5orf58 212 70 45 34 0 0 0.822 0.271 0.174 0.132 0.000 0.000 chr5 170227985 170251231
view C5orf63 174 61 80 42 0 0 0.674 0.236 0.310 0.163 0.000 0.000 chr5 127046304 127078502
view C6 200 70 50 33 0 0 0.775 0.271 0.194 0.128 0.000 0.000 chr5 41137116 41218532
view C6orf118 179 58 69 39 0 0 0.694 0.225 0.267 0.151 0.000 0.000 chr6 165274664 165314605
view C6orf120 207 80 50 24 0 0 0.802 0.310 0.194 0.093 0.000 0.000 chr6 169697126 169711360
view C6orf132 181 47 56 42 0 0 0.702 0.182 0.217 0.163 0.000 0.000 chr6 42096119 42147620
view C6orf136 204 70 52 33 0 0 0.791 0.271 0.202 0.128 0.000 0.000 chr6 30642133 30658207
view C6orf141 206 77 47 24 1 1 0.798 0.298 0.182 0.093 0.004 0.004 chr6 49545668 49557095
view C6orf15 218 79 36 22 0 0 0.845 0.306 0.140 0.085 0.000 0.000 chr6 31106223 31117575
view C6orf163 217 81 38 22 0 0 0.841 0.314 0.147 0.085 0.000 0.000 chr6 87339813 87370463
view C6orf226 197 61 55 39 1 0 0.764 0.236 0.213 0.151 0.004 0.000 chr6 42885265 42895821
view C6orf47 214 75 43 29 0 0 0.829 0.291 0.167 0.112 0.000 0.000 chr6 31653298 31665778
view C6orf52 141 30 104 65 0 0 0.547 0.116 0.403 0.252 0.000 0.000 chr6 10666422 10699616
view C6orf58 226 87 32 18 0 0 0.876 0.337 0.124 0.070 0.000 0.000 chr6 127572174 127596820
view C6orf62 206 70 50 34 0 0 0.798 0.271 0.194 0.132 0.000 0.000 chr6 24699861 24724154
view C6orf89 197 71 51 26 0 0 0.764 0.275 0.198 0.101 0.000 0.000 chr6 36880952 36933964
view C7 189 75 44 22 0 0 0.733 0.291 0.171 0.085 0.000 0.000 chr5 40904497 40989643
view C7orf25 191 67 63 34 0 0 0.740 0.260 0.244 0.132 0.000 0.000 chr7 42904273 42917070
view C7orf31 207 70 40 26 0 0 0.802 0.271 0.155 0.101 0.000 0.000 chr7 25129692 25185354
view C7orf33 221 77 31 22 0 0 0.857 0.298 0.120 0.085 0.000 0.000 chr7 148585766 148620860
view C7orf50 162 43 53 33 0 0 0.628 0.167 0.205 0.128 0.000 0.000 chr7 992006 1143247
view C7orf57 201 72 45 27 0 0 0.779 0.279 0.174 0.105 0.000 0.000 chr7 48030543 48066297
view C8A 182 62 61 36 0 0 0.705 0.240 0.236 0.140 0.000 0.000 chr1 56849797 56923223
view C8B 200 59 47 39 0 0 0.775 0.229 0.182 0.151 0.000 0.000 chr1 56924207 56971015
view C8G 207 64 45 36 0 0 0.802 0.248 0.174 0.140 0.000 0.000 chr9 136940243 136951975
view C8orf33 202 78 53 26 1 0 0.783 0.302 0.205 0.101 0.004 0.000 chr8 145047467 145061030
view C8orf34 63 6 94 52 0 0 0.244 0.023 0.364 0.202 0.000 0.000 chr8 68325955 68824023
view C8orf48 225 87 31 16 1 1 0.872 0.337 0.120 0.062 0.004 0.004 chr8 13561869 13573288
view C8orf58 165 45 77 45 0 0 0.640 0.174 0.298 0.174 0.000 0.000 chr8 22594599 22609142
view C8orf74 214 71 35 26 0 0 0.829 0.275 0.136 0.101 0.000 0.000 chr8 10667628 10705590
view C8orf76 114 15 119 73 0 0 0.442 0.058 0.461 0.283 0.000 0.000 chr8 123214967 123246377
view C8orf82 198 60 49 36 1 0 0.767 0.233 0.190 0.140 0.004 0.000 chr8 144520733 144534111
view C8orf88 183 64 69 39 0 0 0.709 0.248 0.267 0.151 0.000 0.000 chr8 90953471 90990238
view C8orf89 171 57 74 41 0 0 0.663 0.221 0.287 0.159 0.000 0.000 chr8 73236331 73264530
view C8orf90 224 81 29 19 1 1 0.868 0.314 0.112 0.074 0.004 0.004 chr8 141509671 141523729
view C9 196 65 46 30 0 0 0.760 0.252 0.178 0.116 0.000 0.000 chr5 39279140 39369495