Genic Haplotype Summary

Detail View Genename ALL BOTH
# of samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 JPT BOTH
# of JPT samples with two haploids were completely assembled. For the case, cataloged to JoGo haplotype database
 ALL SINGLE
# of samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample and cataloged in JoGo haplotype database. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 ALL BOTH
# of samples with two haploids were completely assembled/# of total samples
 JPT BOTH
# of JPT samples with two haploids were completely assembled/# of total JPT samples
 ALL SINGLE
# of samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 JPT SINGLE
# of JPT samples with one haploid was assembled/# of total samples. For chrX and chrY in male, the ALL SINGLE status means completely cataloged from the sample. For chr1-22 and chrX in female, the assembly was imcomplete and did not catalog in JoGo haplotype database
 ALL MULTI
# of samples with more than two haploid was assembled/# of total samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 JPT MULTI
# of JPT samples with more than two haploid was assembled/# of total JPT samples. For the case, two haploids cannot correctly assembled and did not catalog in JoGo haplotype database
 Chr Start End
view CACNA1I 117 12 85 61 0 0 0.453 0.047 0.329 0.236 0.000 0.000 chr22 39565753 39694735
view CACNA1S 156 38 70 45 0 0 0.605 0.147 0.271 0.174 0.000 0.000 chr1 201034512 201117426
view CACNA2D1 71 13 84 45 0 0 0.275 0.050 0.326 0.174 0.000 0.000 chr7 81941444 82448777
view CACNA2D2 116 27 97 52 0 0 0.450 0.105 0.376 0.202 0.000 0.000 chr3 50357613 50508634
view CACNA2D3 58 3 91 48 0 0 0.225 0.012 0.353 0.186 0.000 0.000 chr3 54117552 55079557
view CACNA2D4 158 43 54 38 0 0 0.612 0.167 0.209 0.147 0.000 0.000 chr12 1786963 1923652
view CACNB1 197 62 48 32 0 0 0.764 0.240 0.186 0.124 0.000 0.000 chr17 39168453 39202669
view CACNB2 100 16 75 40 0 0 0.388 0.062 0.291 0.155 0.000 0.000 chr10 18135424 18548557
view CACNB2 150 44 73 43 0 0 0.581 0.171 0.283 0.167 0.000 0.000 chr10 18335709 18548557
view CACNB3 181 58 72 42 0 0 0.702 0.225 0.279 0.163 0.000 0.000 chr12 48813496 48833941
view CACNB4 115 32 83 47 0 0 0.446 0.124 0.322 0.182 0.000 0.000 chr2 151827771 152104044
view CACNG1 213 73 44 31 0 0 0.826 0.283 0.171 0.120 0.000 0.000 chr17 67039554 67061797
view CACNG2 106 18 94 56 0 0 0.411 0.070 0.364 0.217 0.000 0.000 chr22 36555857 36708752
view CACNG3 182 55 44 29 0 0 0.705 0.213 0.171 0.112 0.000 0.000 chr16 24251335 24367412
view CACNG4 175 48 56 43 0 0 0.678 0.186 0.217 0.167 0.000 0.000 chr17 66959707 67038398
view CACNG5 185 51 54 40 0 0 0.717 0.198 0.209 0.155 0.000 0.000 chr17 66830117 66899751
view CACNG6 214 70 31 24 0 0 0.829 0.271 0.120 0.093 0.000 0.000 chr19 53986637 54017666
view CACNG7 182 48 52 38 0 0 0.705 0.186 0.202 0.147 0.000 0.000 chr19 53904278 53948950
view CACNG8 196 57 43 31 0 0 0.760 0.221 0.167 0.120 0.000 0.000 chr19 53957937 53995215
view CACTIN 203 69 45 29 0 0 0.787 0.267 0.174 0.112 0.000 0.000 chr19 3605645 3631790
view CACUL1 193 72 54 27 0 0 0.748 0.279 0.209 0.105 0.000 0.000 chr10 118671411 118759970
view CACYBP 207 76 50 28 0 0 0.802 0.295 0.194 0.109 0.000 0.000 chr1 174994947 175017027
view CADM1 82 16 96 55 0 0 0.318 0.062 0.372 0.213 0.000 0.000 chr11 115164236 115509415
view CADM2 73 12 88 49 0 0 0.283 0.047 0.341 0.190 0.000 0.000 chr3 84953989 86079429
view CADM3 187 67 52 29 0 0 0.725 0.260 0.202 0.112 0.000 0.000 chr1 159166615 159208313
view CADM4 211 78 43 24 0 0 0.818 0.302 0.167 0.093 0.000 0.000 chr19 43617368 43644850
view CADPS2 62 7 100 52 0 0 0.240 0.027 0.388 0.202 0.000 0.000 chr7 122313411 122891460
view CADPS 79 7 80 50 0 0 0.306 0.027 0.310 0.194 0.000 0.000 chr3 62393348 62880416
view CAD 128 23 116 70 0 0 0.496 0.089 0.450 0.271 0.000 0.000 chr2 27212369 27248943
view CAGE1 179 63 64 37 0 0 0.694 0.244 0.248 0.143 0.000 0.000 chr6 7321659 7394742
view CALB1 191 72 51 25 0 0 0.740 0.279 0.198 0.097 0.000 0.000 chr8 90053608 90087879
view CALB2 212 76 39 23 0 0 0.822 0.295 0.151 0.089 0.000 0.000 chr16 71353723 71395433
view CALCA 191 69 66 36 1 0 0.740 0.267 0.256 0.140 0.004 0.000 chr11 14963501 14977351
view CALCB 207 74 50 30 0 0 0.802 0.287 0.194 0.116 0.000 0.000 chr11 15068593 15083637
view CALCOCO1 213 80 40 20 0 0 0.826 0.310 0.155 0.078 0.000 0.000 chr12 53703517 53732452
view CALCOCO2 163 42 86 55 0 0 0.632 0.163 0.333 0.213 0.000 0.000 chr17 48826035 48870245
view CALCRL 171 54 71 37 0 0 0.663 0.209 0.275 0.143 0.000 0.000 chr2 187336964 187453252
view CALCR 145 48 74 36 0 0 0.562 0.186 0.287 0.140 0.000 0.000 chr7 93419486 93579724
view CALD1 130 31 80 47 0 0 0.504 0.120 0.310 0.182 0.000 0.000 chr7 134774634 134975729
view CALHM1 230 86 22 14 2 1 0.891 0.333 0.085 0.054 0.008 0.004 chr10 103448240 103463900
view CALHM2 228 86 28 18 1 0 0.884 0.333 0.109 0.070 0.004 0.000 chr10 103441786 103457370
view CALHM3 224 82 32 22 0 0 0.868 0.318 0.124 0.085 0.000 0.000 chr10 103467804 103484240
view CALHM4 203 74 53 29 1 1 0.787 0.287 0.205 0.112 0.004 0.004 chr6 116548751 116566127
view CALHM5 200 72 53 29 1 1 0.775 0.279 0.205 0.112 0.004 0.004 chr6 116506639 116529788
view CALHM6 219 81 37 22 0 0 0.849 0.314 0.143 0.085 0.000 0.000 chr6 116456375 116468771
view CALM1 203 64 50 37 1 0 0.787 0.248 0.194 0.143 0.004 0.000 chr14 90392029 90413268
view CALM2 215 77 38 24 0 0 0.833 0.298 0.147 0.093 0.000 0.000 chr2 47155084 47181511
view CALM3 210 73 41 27 0 0 0.814 0.283 0.159 0.105 0.000 0.000 chr19 46596330 46615782
view CALML3 225 79 29 22 0 0 0.872 0.306 0.112 0.085 0.000 0.000 chr10 5519961 5531771
view CALML4 192 61 63 41 0 0 0.744 0.236 0.244 0.159 0.000 0.000 chr15 68185705 68210332